Experiment: marine broth pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04180 and PGA1_c04190 are separated by 57 nucleotides PGA1_c04190 and PGA1_c04200 are separated by 159 nucleotides
PGA1_c04180: PGA1_c04180 - phosphonates import ATP-binding protein PhnC, at 405,706 to 406,524
_c04180
PGA1_c04190: PGA1_c04190 - phosphate uptake ABC transporter periplasmic solute-binding protein PhoD, at 406,582 to 407,490
_c04190
PGA1_c04200: PGA1_c04200 - phosphate uptake ABC transporter permease protein PhoE, at 407,650 to 408,519
_c04200
Position (kb) 406
407
408 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 405.587 kb on - strand at 405.619 kb on + strand at 405.670 kb on + strand at 405.670 kb on + strand at 405.678 kb on - strand at 405.678 kb on - strand at 405.678 kb on - strand at 405.680 kb on + strand at 405.680 kb on + strand at 405.688 kb on - strand at 405.688 kb on - strand at 405.701 kb on + strand at 405.701 kb on + strand at 405.708 kb on - strand at 405.756 kb on + strand at 405.756 kb on + strand at 405.799 kb on + strand, within PGA1_c04180 at 405.861 kb on + strand, within PGA1_c04180 at 405.890 kb on + strand, within PGA1_c04180 at 405.898 kb on - strand, within PGA1_c04180 at 405.898 kb on - strand, within PGA1_c04180 at 405.899 kb on + strand, within PGA1_c04180 at 405.899 kb on + strand, within PGA1_c04180 at 405.914 kb on + strand, within PGA1_c04180 at 405.914 kb on + strand, within PGA1_c04180 at 405.961 kb on - strand, within PGA1_c04180 at 405.961 kb on - strand, within PGA1_c04180 at 405.963 kb on + strand, within PGA1_c04180 at 405.971 kb on - strand, within PGA1_c04180 at 406.003 kb on - strand, within PGA1_c04180 at 406.012 kb on + strand, within PGA1_c04180 at 406.044 kb on + strand, within PGA1_c04180 at 406.044 kb on + strand, within PGA1_c04180 at 406.044 kb on + strand, within PGA1_c04180 at 406.106 kb on - strand, within PGA1_c04180 at 406.140 kb on + strand, within PGA1_c04180 at 406.148 kb on - strand, within PGA1_c04180 at 406.150 kb on - strand, within PGA1_c04180 at 406.155 kb on - strand, within PGA1_c04180 at 406.340 kb on - strand, within PGA1_c04180 at 406.398 kb on + strand, within PGA1_c04180 at 406.453 kb on + strand at 406.468 kb on - strand at 406.485 kb on - strand at 406.485 kb on - strand at 406.551 kb on + strand at 406.561 kb on + strand at 406.613 kb on + strand at 406.613 kb on + strand at 406.618 kb on + strand at 406.618 kb on + strand at 406.618 kb on + strand at 406.621 kb on - strand at 406.621 kb on - strand at 406.621 kb on - strand at 406.621 kb on - strand at 406.621 kb on - strand at 406.626 kb on - strand at 406.626 kb on - strand at 406.626 kb on - strand at 406.626 kb on - strand at 406.626 kb on - strand at 406.626 kb on - strand at 406.626 kb on - strand at 406.626 kb on - strand at 406.628 kb on + strand at 406.638 kb on + strand at 406.638 kb on + strand at 406.646 kb on - strand at 406.646 kb on - strand at 406.646 kb on - strand at 406.701 kb on - strand, within PGA1_c04190 at 406.721 kb on - strand, within PGA1_c04190 at 406.761 kb on - strand, within PGA1_c04190 at 406.788 kb on - strand, within PGA1_c04190 at 406.788 kb on - strand, within PGA1_c04190 at 406.796 kb on + strand, within PGA1_c04190 at 406.833 kb on + strand, within PGA1_c04190 at 406.882 kb on + strand, within PGA1_c04190 at 406.895 kb on - strand, within PGA1_c04190 at 406.924 kb on + strand, within PGA1_c04190 at 406.924 kb on + strand, within PGA1_c04190 at 406.926 kb on - strand, within PGA1_c04190 at 406.953 kb on - strand, within PGA1_c04190 at 406.986 kb on + strand, within PGA1_c04190 at 406.986 kb on + strand, within PGA1_c04190 at 406.989 kb on - strand, within PGA1_c04190 at 407.071 kb on + strand, within PGA1_c04190 at 407.122 kb on + strand, within PGA1_c04190 at 407.125 kb on - strand, within PGA1_c04190 at 407.132 kb on + strand, within PGA1_c04190 at 407.242 kb on + strand, within PGA1_c04190 at 407.245 kb on - strand, within PGA1_c04190 at 407.263 kb on - strand, within PGA1_c04190 at 407.280 kb on + strand, within PGA1_c04190 at 407.280 kb on + strand, within PGA1_c04190 at 407.288 kb on - strand, within PGA1_c04190 at 407.288 kb on - strand, within PGA1_c04190 at 407.288 kb on - strand, within PGA1_c04190 at 407.300 kb on + strand, within PGA1_c04190 at 407.300 kb on + strand, within PGA1_c04190 at 407.308 kb on - strand, within PGA1_c04190 at 407.311 kb on - strand, within PGA1_c04190 at 407.315 kb on + strand, within PGA1_c04190 at 407.318 kb on - strand, within PGA1_c04190 at 407.401 kb on - strand at 407.415 kb on + strand at 407.415 kb on + strand at 407.415 kb on + strand at 407.422 kb on - strand at 407.423 kb on - strand at 407.423 kb on - strand at 407.447 kb on + strand at 407.447 kb on + strand at 407.447 kb on + strand at 407.455 kb on - strand at 407.455 kb on - strand at 407.455 kb on - strand at 407.455 kb on - strand at 407.455 kb on - strand at 407.455 kb on - strand at 407.499 kb on - strand at 407.512 kb on - strand at 407.517 kb on + strand at 407.520 kb on + strand at 407.528 kb on - strand at 407.537 kb on + strand at 407.569 kb on - strand at 407.571 kb on + strand at 407.571 kb on + strand at 407.571 kb on + strand at 407.571 kb on + strand at 407.571 kb on + strand at 407.571 kb on + strand at 407.571 kb on + strand at 407.579 kb on - strand at 407.579 kb on - strand at 407.579 kb on - strand at 407.579 kb on - strand at 407.579 kb on - strand at 407.579 kb on - strand at 407.579 kb on - strand at 407.579 kb on - strand at 407.579 kb on - strand at 407.579 kb on - strand at 407.582 kb on - strand at 407.665 kb on + strand at 407.737 kb on - strand, within PGA1_c04200 at 407.806 kb on + strand, within PGA1_c04200 at 407.859 kb on + strand, within PGA1_c04200 at 407.885 kb on - strand, within PGA1_c04200 at 407.902 kb on + strand, within PGA1_c04200 at 407.902 kb on + strand, within PGA1_c04200 at 407.907 kb on + strand, within PGA1_c04200 at 407.980 kb on + strand, within PGA1_c04200 at 407.980 kb on + strand, within PGA1_c04200 at 408.012 kb on - strand, within PGA1_c04200 at 408.124 kb on - strand, within PGA1_c04200 at 408.165 kb on + strand, within PGA1_c04200 at 408.225 kb on - strand, within PGA1_c04200 at 408.255 kb on + strand, within PGA1_c04200 at 408.256 kb on + strand, within PGA1_c04200 at 408.280 kb on + strand, within PGA1_c04200 at 408.304 kb on + strand, within PGA1_c04200 at 408.379 kb on - strand, within PGA1_c04200 at 408.395 kb on + strand, within PGA1_c04200 at 408.486 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH 6 remove 405,587 - -0.7 405,619 + -0.6 405,670 + +0.3 405,670 + -0.3 405,678 - -0.3 405,678 - +0.9 405,678 - -0.7 405,680 + +0.3 405,680 + -1.2 405,688 - +0.7 405,688 - -0.5 405,701 + -1.8 405,701 + -0.1 405,708 - -0.5 405,756 + +0.8 405,756 + +0.9 405,799 + PGA1_c04180 0.11 -0.4 405,861 + PGA1_c04180 0.19 +1.4 405,890 + PGA1_c04180 0.22 -0.4 405,898 - PGA1_c04180 0.23 -1.1 405,898 - PGA1_c04180 0.23 +1.9 405,899 + PGA1_c04180 0.24 +0.5 405,899 + PGA1_c04180 0.24 -1.3 405,914 + PGA1_c04180 0.25 +0.7 405,914 + PGA1_c04180 0.25 -0.5 405,961 - PGA1_c04180 0.31 +0.0 405,961 - PGA1_c04180 0.31 -0.5 405,963 + PGA1_c04180 0.31 +1.6 405,971 - PGA1_c04180 0.32 +1.4 406,003 - PGA1_c04180 0.36 -3.2 406,012 + PGA1_c04180 0.37 -1.6 406,044 + PGA1_c04180 0.41 -0.1 406,044 + PGA1_c04180 0.41 -0.2 406,044 + PGA1_c04180 0.41 +0.9 406,106 - PGA1_c04180 0.49 +1.9 406,140 + PGA1_c04180 0.53 +0.6 406,148 - PGA1_c04180 0.54 -0.8 406,150 - PGA1_c04180 0.54 -1.1 406,155 - PGA1_c04180 0.55 +0.9 406,340 - PGA1_c04180 0.77 -0.3 406,398 + PGA1_c04180 0.84 +0.7 406,453 + +0.7 406,468 - +1.0 406,485 - -0.0 406,485 - +0.7 406,551 + +0.8 406,561 + -1.0 406,613 + +0.5 406,613 + -0.9 406,618 + -0.3 406,618 + +0.2 406,618 + -1.4 406,621 - -0.8 406,621 - -1.1 406,621 - -2.9 406,621 - -2.1 406,621 - +0.2 406,626 - +0.6 406,626 - -0.2 406,626 - +1.6 406,626 - +0.9 406,626 - -1.2 406,626 - -0.1 406,626 - +0.9 406,626 - +0.3 406,628 + +0.7 406,638 + -2.1 406,638 + -1.9 406,646 - +0.6 406,646 - -0.1 406,646 - +0.5 406,701 - PGA1_c04190 0.13 -0.7 406,721 - PGA1_c04190 0.15 +1.0 406,761 - PGA1_c04190 0.20 +0.8 406,788 - PGA1_c04190 0.23 -1.6 406,788 - PGA1_c04190 0.23 -3.2 406,796 + PGA1_c04190 0.24 +0.3 406,833 + PGA1_c04190 0.28 +1.7 406,882 + PGA1_c04190 0.33 +0.9 406,895 - PGA1_c04190 0.34 -2.5 406,924 + PGA1_c04190 0.38 +1.7 406,924 + PGA1_c04190 0.38 +1.8 406,926 - PGA1_c04190 0.38 -0.2 406,953 - PGA1_c04190 0.41 +1.1 406,986 + PGA1_c04190 0.44 +1.9 406,986 + PGA1_c04190 0.44 +0.2 406,989 - PGA1_c04190 0.45 +0.6 407,071 + PGA1_c04190 0.54 +0.2 407,122 + PGA1_c04190 0.59 +0.9 407,125 - PGA1_c04190 0.60 -1.9 407,132 + PGA1_c04190 0.61 +1.7 407,242 + PGA1_c04190 0.73 -0.9 407,245 - PGA1_c04190 0.73 +1.3 407,263 - PGA1_c04190 0.75 +0.3 407,280 + PGA1_c04190 0.77 -1.3 407,280 + PGA1_c04190 0.77 +0.2 407,288 - PGA1_c04190 0.78 +0.6 407,288 - PGA1_c04190 0.78 +0.9 407,288 - PGA1_c04190 0.78 +0.8 407,300 + PGA1_c04190 0.79 +0.8 407,300 + PGA1_c04190 0.79 +1.6 407,308 - PGA1_c04190 0.80 +0.9 407,311 - PGA1_c04190 0.80 +0.7 407,315 + PGA1_c04190 0.81 +0.7 407,318 - PGA1_c04190 0.81 +1.5 407,401 - +1.1 407,415 + -0.8 407,415 + -0.3 407,415 + +0.4 407,422 - +0.1 407,423 - -1.6 407,423 - -0.5 407,447 + -0.3 407,447 + -0.9 407,447 + +2.0 407,455 - -0.9 407,455 - +0.6 407,455 - +1.1 407,455 - -0.4 407,455 - -0.8 407,455 - -0.8 407,499 - +0.2 407,512 - -1.1 407,517 + +1.2 407,520 + +1.8 407,528 - -0.5 407,537 + +1.3 407,569 - +0.4 407,571 + +0.7 407,571 + -1.2 407,571 + +0.2 407,571 + -0.4 407,571 + -0.6 407,571 + +0.3 407,571 + +0.4 407,579 - -0.4 407,579 - +0.2 407,579 - +0.8 407,579 - -0.9 407,579 - +0.7 407,579 - -1.9 407,579 - +1.0 407,579 - +0.9 407,579 - -0.5 407,579 - +1.0 407,582 - +1.8 407,665 + +0.4 407,737 - PGA1_c04200 0.10 +1.6 407,806 + PGA1_c04200 0.18 -0.4 407,859 + PGA1_c04200 0.24 +1.7 407,885 - PGA1_c04200 0.27 -1.7 407,902 + PGA1_c04200 0.29 +0.2 407,902 + PGA1_c04200 0.29 -0.7 407,907 + PGA1_c04200 0.30 -0.4 407,980 + PGA1_c04200 0.38 -0.2 407,980 + PGA1_c04200 0.38 +0.1 408,012 - PGA1_c04200 0.42 +0.9 408,124 - PGA1_c04200 0.54 +1.6 408,165 + PGA1_c04200 0.59 -2.6 408,225 - PGA1_c04200 0.66 +1.6 408,255 + PGA1_c04200 0.70 -1.7 408,256 + PGA1_c04200 0.70 -1.0 408,280 + PGA1_c04200 0.72 -0.1 408,304 + PGA1_c04200 0.75 -1.8 408,379 - PGA1_c04200 0.84 -0.5 408,395 + PGA1_c04200 0.86 -0.6 408,486 - -0.3
Or see this region's nucleotide sequence