Experiment: marine broth pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04140 and PGA1_c04150 overlap by 20 nucleotides PGA1_c04150 and PGA1_c04160 are separated by 63 nucleotides
PGA1_c04140: PGA1_c04140 - putative acyl-CoA dehydrogenase, at 401,615 to 402,760
_c04140
PGA1_c04150: PGA1_c04150 - thioesterase domain-containing protein, at 402,741 to 403,205
_c04150
PGA1_c04160: PGA1_c04160 - putative crotonobetaine/carnitine-CoA ligase, at 403,269 to 404,774
_c04160
Position (kb) 402
403
404 Strain fitness (log2 ratio) -2
-1
0
1
2 at 401.816 kb on + strand, within PGA1_c04140 at 401.816 kb on + strand, within PGA1_c04140 at 401.824 kb on - strand, within PGA1_c04140 at 401.843 kb on + strand, within PGA1_c04140 at 401.843 kb on + strand, within PGA1_c04140 at 401.843 kb on + strand, within PGA1_c04140 at 401.843 kb on + strand, within PGA1_c04140 at 401.843 kb on + strand, within PGA1_c04140 at 401.851 kb on - strand, within PGA1_c04140 at 401.851 kb on - strand, within PGA1_c04140 at 401.851 kb on - strand, within PGA1_c04140 at 401.858 kb on + strand, within PGA1_c04140 at 401.885 kb on + strand, within PGA1_c04140 at 401.898 kb on + strand, within PGA1_c04140 at 402.025 kb on + strand, within PGA1_c04140 at 402.035 kb on - strand, within PGA1_c04140 at 402.165 kb on + strand, within PGA1_c04140 at 402.205 kb on - strand, within PGA1_c04140 at 402.248 kb on - strand, within PGA1_c04140 at 402.372 kb on - strand, within PGA1_c04140 at 402.374 kb on - strand, within PGA1_c04140 at 402.403 kb on + strand, within PGA1_c04140 at 402.497 kb on - strand, within PGA1_c04140 at 402.497 kb on - strand, within PGA1_c04140 at 402.499 kb on + strand, within PGA1_c04140 at 402.499 kb on + strand, within PGA1_c04140 at 402.512 kb on - strand, within PGA1_c04140 at 402.514 kb on + strand, within PGA1_c04140 at 402.514 kb on + strand, within PGA1_c04140 at 402.725 kb on + strand at 402.746 kb on - strand at 402.753 kb on - strand at 402.754 kb on + strand at 402.801 kb on - strand, within PGA1_c04150 at 402.846 kb on - strand, within PGA1_c04150 at 402.846 kb on - strand, within PGA1_c04150 at 402.886 kb on - strand, within PGA1_c04150 at 402.886 kb on - strand, within PGA1_c04150 at 402.933 kb on + strand, within PGA1_c04150 at 403.057 kb on - strand, within PGA1_c04150 at 403.082 kb on - strand, within PGA1_c04150 at 403.087 kb on - strand, within PGA1_c04150 at 403.124 kb on - strand, within PGA1_c04150 at 403.139 kb on + strand, within PGA1_c04150 at 403.209 kb on - strand at 403.209 kb on - strand at 403.251 kb on + strand at 403.251 kb on + strand at 403.262 kb on - strand at 403.266 kb on + strand at 403.267 kb on - strand at 403.321 kb on - strand at 403.347 kb on - strand at 403.355 kb on + strand at 403.406 kb on - strand at 403.406 kb on - strand at 403.417 kb on - strand at 403.426 kb on + strand, within PGA1_c04160 at 403.478 kb on + strand, within PGA1_c04160 at 403.494 kb on - strand, within PGA1_c04160 at 403.568 kb on + strand, within PGA1_c04160 at 403.576 kb on - strand, within PGA1_c04160 at 403.576 kb on - strand, within PGA1_c04160 at 403.576 kb on - strand, within PGA1_c04160 at 403.583 kb on + strand, within PGA1_c04160 at 403.588 kb on - strand, within PGA1_c04160 at 403.733 kb on + strand, within PGA1_c04160 at 403.733 kb on + strand, within PGA1_c04160 at 403.736 kb on - strand, within PGA1_c04160 at 403.736 kb on - strand, within PGA1_c04160 at 403.741 kb on - strand, within PGA1_c04160 at 403.773 kb on + strand, within PGA1_c04160 at 403.821 kb on - strand, within PGA1_c04160 at 403.842 kb on + strand, within PGA1_c04160 at 403.847 kb on + strand, within PGA1_c04160 at 403.847 kb on + strand, within PGA1_c04160 at 403.855 kb on - strand, within PGA1_c04160 at 403.855 kb on - strand, within PGA1_c04160 at 403.855 kb on - strand, within PGA1_c04160 at 403.857 kb on + strand, within PGA1_c04160 at 403.865 kb on - strand, within PGA1_c04160 at 403.875 kb on + strand, within PGA1_c04160 at 403.883 kb on - strand, within PGA1_c04160 at 403.892 kb on + strand, within PGA1_c04160 at 403.926 kb on - strand, within PGA1_c04160 at 403.943 kb on + strand, within PGA1_c04160 at 403.943 kb on + strand, within PGA1_c04160 at 403.951 kb on - strand, within PGA1_c04160 at 403.976 kb on + strand, within PGA1_c04160 at 403.989 kb on - strand, within PGA1_c04160 at 403.991 kb on + strand, within PGA1_c04160 at 404.047 kb on + strand, within PGA1_c04160 at 404.054 kb on - strand, within PGA1_c04160 at 404.055 kb on + strand, within PGA1_c04160 at 404.087 kb on + strand, within PGA1_c04160 at 404.100 kb on - strand, within PGA1_c04160 at 404.129 kb on - strand, within PGA1_c04160 at 404.189 kb on + strand, within PGA1_c04160 at 404.194 kb on + strand, within PGA1_c04160
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH 6 remove 401,816 + PGA1_c04140 0.18 +1.8 401,816 + PGA1_c04140 0.18 +1.2 401,824 - PGA1_c04140 0.18 +1.9 401,843 + PGA1_c04140 0.20 -2.3 401,843 + PGA1_c04140 0.20 +2.2 401,843 + PGA1_c04140 0.20 -0.5 401,843 + PGA1_c04140 0.20 +0.3 401,843 + PGA1_c04140 0.20 -1.3 401,851 - PGA1_c04140 0.21 +0.9 401,851 - PGA1_c04140 0.21 -0.9 401,851 - PGA1_c04140 0.21 +1.7 401,858 + PGA1_c04140 0.21 +0.9 401,885 + PGA1_c04140 0.24 -0.0 401,898 + PGA1_c04140 0.25 -0.7 402,025 + PGA1_c04140 0.36 -1.3 402,035 - PGA1_c04140 0.37 -0.6 402,165 + PGA1_c04140 0.48 -0.0 402,205 - PGA1_c04140 0.51 +0.5 402,248 - PGA1_c04140 0.55 +0.7 402,372 - PGA1_c04140 0.66 +0.1 402,374 - PGA1_c04140 0.66 -0.1 402,403 + PGA1_c04140 0.69 -0.1 402,497 - PGA1_c04140 0.77 +0.3 402,497 - PGA1_c04140 0.77 +1.2 402,499 + PGA1_c04140 0.77 -0.6 402,499 + PGA1_c04140 0.77 -0.7 402,512 - PGA1_c04140 0.78 -0.4 402,514 + PGA1_c04140 0.78 +1.3 402,514 + PGA1_c04140 0.78 +0.9 402,725 + -0.8 402,746 - +0.7 402,753 - -0.7 402,754 + +1.7 402,801 - PGA1_c04150 0.13 -1.4 402,846 - PGA1_c04150 0.23 -0.3 402,846 - PGA1_c04150 0.23 +0.5 402,886 - PGA1_c04150 0.31 -0.5 402,886 - PGA1_c04150 0.31 -1.5 402,933 + PGA1_c04150 0.41 -2.1 403,057 - PGA1_c04150 0.68 +0.6 403,082 - PGA1_c04150 0.73 -1.6 403,087 - PGA1_c04150 0.74 -0.9 403,124 - PGA1_c04150 0.82 +0.3 403,139 + PGA1_c04150 0.86 -0.5 403,209 - -1.8 403,209 - -1.3 403,251 + +1.4 403,251 + +2.1 403,262 - +0.2 403,266 + +0.7 403,267 - +0.1 403,321 - -0.0 403,347 - +1.7 403,355 + -0.3 403,406 - +0.1 403,406 - +0.1 403,417 - +0.7 403,426 + PGA1_c04160 0.10 -0.7 403,478 + PGA1_c04160 0.14 +1.8 403,494 - PGA1_c04160 0.15 +0.5 403,568 + PGA1_c04160 0.20 -1.9 403,576 - PGA1_c04160 0.20 -0.3 403,576 - PGA1_c04160 0.20 +2.3 403,576 - PGA1_c04160 0.20 -0.4 403,583 + PGA1_c04160 0.21 -0.5 403,588 - PGA1_c04160 0.21 -0.3 403,733 + PGA1_c04160 0.31 -0.2 403,733 + PGA1_c04160 0.31 +1.6 403,736 - PGA1_c04160 0.31 -0.2 403,736 - PGA1_c04160 0.31 -0.2 403,741 - PGA1_c04160 0.31 +0.2 403,773 + PGA1_c04160 0.33 +0.6 403,821 - PGA1_c04160 0.37 -0.8 403,842 + PGA1_c04160 0.38 -0.5 403,847 + PGA1_c04160 0.38 +1.4 403,847 + PGA1_c04160 0.38 -1.8 403,855 - PGA1_c04160 0.39 +2.4 403,855 - PGA1_c04160 0.39 -1.7 403,855 - PGA1_c04160 0.39 -0.9 403,857 + PGA1_c04160 0.39 +0.2 403,865 - PGA1_c04160 0.40 -0.6 403,875 + PGA1_c04160 0.40 -0.7 403,883 - PGA1_c04160 0.41 +0.4 403,892 + PGA1_c04160 0.41 -1.7 403,926 - PGA1_c04160 0.44 -1.0 403,943 + PGA1_c04160 0.45 -0.9 403,943 + PGA1_c04160 0.45 +1.2 403,951 - PGA1_c04160 0.45 +0.8 403,976 + PGA1_c04160 0.47 +1.8 403,989 - PGA1_c04160 0.48 -0.6 403,991 + PGA1_c04160 0.48 -0.3 404,047 + PGA1_c04160 0.52 -2.0 404,054 - PGA1_c04160 0.52 -0.2 404,055 + PGA1_c04160 0.52 +0.9 404,087 + PGA1_c04160 0.54 +0.4 404,100 - PGA1_c04160 0.55 +2.4 404,129 - PGA1_c04160 0.57 -0.3 404,189 + PGA1_c04160 0.61 +0.1 404,194 + PGA1_c04160 0.61 +0.6
Or see this region's nucleotide sequence