Experiment: marine broth pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04040 and PGA1_c04050 are separated by 10 nucleotides PGA1_c04050 and PGA1_c04060 are separated by 122 nucleotides PGA1_c04060 and PGA1_c04070 overlap by 1 nucleotides
PGA1_c04040: PGA1_c04040 - phenylacetic acid degradation NADH oxidoreductase PaaE, at 389,769 to 390,842
_c04040
PGA1_c04050: PGA1_c04050 - phenylacetic acid degradation protein PaaD, at 390,853 to 391,326
_c04050
PGA1_c04060: PGA1_c04060 - phenylacetic acid degradation protein PaaC, at 391,449 to 392,222
_c04060
PGA1_c04070: PGA1_c04070 - phenylacetic acid degradation protein PaaB, at 392,222 to 392,506
_c04070
Position (kb) 390
391
392 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 389.882 kb on - strand, within PGA1_c04040 at 389.897 kb on - strand, within PGA1_c04040 at 389.919 kb on + strand, within PGA1_c04040 at 389.919 kb on - strand, within PGA1_c04040 at 389.934 kb on + strand, within PGA1_c04040 at 389.934 kb on + strand, within PGA1_c04040 at 389.942 kb on - strand, within PGA1_c04040 at 389.979 kb on + strand, within PGA1_c04040 at 389.980 kb on + strand, within PGA1_c04040 at 389.987 kb on - strand, within PGA1_c04040 at 389.988 kb on - strand, within PGA1_c04040 at 390.003 kb on + strand, within PGA1_c04040 at 390.011 kb on - strand, within PGA1_c04040 at 390.011 kb on - strand, within PGA1_c04040 at 390.034 kb on + strand, within PGA1_c04040 at 390.034 kb on + strand, within PGA1_c04040 at 390.034 kb on + strand, within PGA1_c04040 at 390.044 kb on + strand, within PGA1_c04040 at 390.052 kb on - strand, within PGA1_c04040 at 390.070 kb on + strand, within PGA1_c04040 at 390.070 kb on + strand, within PGA1_c04040 at 390.106 kb on + strand, within PGA1_c04040 at 390.114 kb on - strand, within PGA1_c04040 at 390.116 kb on + strand, within PGA1_c04040 at 390.153 kb on + strand, within PGA1_c04040 at 390.161 kb on - strand, within PGA1_c04040 at 390.161 kb on - strand, within PGA1_c04040 at 390.166 kb on - strand, within PGA1_c04040 at 390.171 kb on + strand, within PGA1_c04040 at 390.185 kb on + strand, within PGA1_c04040 at 390.193 kb on - strand, within PGA1_c04040 at 390.196 kb on - strand, within PGA1_c04040 at 390.237 kb on - strand, within PGA1_c04040 at 390.274 kb on + strand, within PGA1_c04040 at 390.274 kb on + strand, within PGA1_c04040 at 390.323 kb on + strand, within PGA1_c04040 at 390.323 kb on + strand, within PGA1_c04040 at 390.331 kb on - strand, within PGA1_c04040 at 390.337 kb on + strand, within PGA1_c04040 at 390.337 kb on + strand, within PGA1_c04040 at 390.337 kb on + strand, within PGA1_c04040 at 390.337 kb on + strand, within PGA1_c04040 at 390.345 kb on - strand, within PGA1_c04040 at 390.365 kb on - strand, within PGA1_c04040 at 390.365 kb on - strand, within PGA1_c04040 at 390.374 kb on + strand, within PGA1_c04040 at 390.400 kb on + strand, within PGA1_c04040 at 390.400 kb on + strand, within PGA1_c04040 at 390.400 kb on + strand, within PGA1_c04040 at 390.400 kb on + strand, within PGA1_c04040 at 390.400 kb on + strand, within PGA1_c04040 at 390.404 kb on + strand, within PGA1_c04040 at 390.408 kb on - strand, within PGA1_c04040 at 390.408 kb on - strand, within PGA1_c04040 at 390.408 kb on - strand, within PGA1_c04040 at 390.408 kb on - strand, within PGA1_c04040 at 390.408 kb on - strand, within PGA1_c04040 at 390.408 kb on - strand, within PGA1_c04040 at 390.418 kb on - strand, within PGA1_c04040 at 390.438 kb on - strand, within PGA1_c04040 at 390.439 kb on + strand, within PGA1_c04040 at 390.445 kb on + strand, within PGA1_c04040 at 390.445 kb on + strand, within PGA1_c04040 at 390.453 kb on - strand, within PGA1_c04040 at 390.461 kb on + strand, within PGA1_c04040 at 390.461 kb on + strand, within PGA1_c04040 at 390.496 kb on + strand, within PGA1_c04040 at 390.504 kb on - strand, within PGA1_c04040 at 390.597 kb on + strand, within PGA1_c04040 at 390.605 kb on - strand, within PGA1_c04040 at 390.605 kb on - strand, within PGA1_c04040 at 390.651 kb on + strand, within PGA1_c04040 at 390.654 kb on - strand, within PGA1_c04040 at 390.654 kb on - strand, within PGA1_c04040 at 390.681 kb on + strand, within PGA1_c04040 at 390.686 kb on + strand, within PGA1_c04040 at 390.686 kb on + strand, within PGA1_c04040 at 390.694 kb on - strand, within PGA1_c04040 at 390.715 kb on + strand, within PGA1_c04040 at 390.720 kb on + strand, within PGA1_c04040 at 390.720 kb on + strand, within PGA1_c04040 at 390.720 kb on + strand, within PGA1_c04040 at 390.720 kb on + strand, within PGA1_c04040 at 390.723 kb on - strand, within PGA1_c04040 at 390.728 kb on - strand, within PGA1_c04040 at 390.728 kb on - strand, within PGA1_c04040 at 390.826 kb on - strand at 390.851 kb on + strand at 390.851 kb on + strand at 390.851 kb on + strand at 390.859 kb on - strand at 390.879 kb on + strand at 390.879 kb on + strand at 390.887 kb on - strand at 390.888 kb on + strand at 390.892 kb on - strand at 390.909 kb on - strand, within PGA1_c04050 at 390.948 kb on + strand, within PGA1_c04050 at 390.999 kb on - strand, within PGA1_c04050 at 391.009 kb on + strand, within PGA1_c04050 at 391.047 kb on + strand, within PGA1_c04050 at 391.080 kb on - strand, within PGA1_c04050 at 391.080 kb on - strand, within PGA1_c04050 at 391.173 kb on + strand, within PGA1_c04050 at 391.181 kb on - strand, within PGA1_c04050 at 391.181 kb on - strand, within PGA1_c04050 at 391.181 kb on - strand, within PGA1_c04050 at 391.193 kb on - strand, within PGA1_c04050 at 391.201 kb on + strand, within PGA1_c04050 at 391.210 kb on - strand, within PGA1_c04050 at 391.225 kb on + strand, within PGA1_c04050 at 391.261 kb on + strand, within PGA1_c04050 at 391.280 kb on - strand at 391.379 kb on - strand at 391.380 kb on - strand at 391.380 kb on - strand at 391.380 kb on - strand at 391.440 kb on + strand at 391.493 kb on + strand at 391.494 kb on + strand at 391.580 kb on - strand, within PGA1_c04060 at 391.592 kb on + strand, within PGA1_c04060 at 391.642 kb on + strand, within PGA1_c04060 at 391.692 kb on + strand, within PGA1_c04060 at 391.719 kb on + strand, within PGA1_c04060 at 391.767 kb on - strand, within PGA1_c04060 at 391.808 kb on - strand, within PGA1_c04060 at 391.858 kb on - strand, within PGA1_c04060 at 391.866 kb on - strand, within PGA1_c04060 at 392.028 kb on - strand, within PGA1_c04060 at 392.028 kb on - strand, within PGA1_c04060 at 392.028 kb on - strand, within PGA1_c04060 at 392.073 kb on - strand, within PGA1_c04060 at 392.073 kb on - strand, within PGA1_c04060 at 392.080 kb on + strand, within PGA1_c04060 at 392.080 kb on + strand, within PGA1_c04060 at 392.080 kb on + strand, within PGA1_c04060 at 392.080 kb on + strand, within PGA1_c04060 at 392.080 kb on + strand, within PGA1_c04060 at 392.080 kb on + strand, within PGA1_c04060 at 392.088 kb on - strand, within PGA1_c04060 at 392.088 kb on - strand, within PGA1_c04060 at 392.088 kb on - strand, within PGA1_c04060 at 392.088 kb on - strand, within PGA1_c04060 at 392.088 kb on - strand, within PGA1_c04060 at 392.121 kb on + strand, within PGA1_c04060 at 392.151 kb on + strand at 392.178 kb on - strand at 392.217 kb on + strand at 392.217 kb on + strand at 392.268 kb on + strand, within PGA1_c04070 at 392.275 kb on + strand, within PGA1_c04070 at 392.276 kb on - strand, within PGA1_c04070 at 392.282 kb on - strand, within PGA1_c04070 at 392.283 kb on - strand, within PGA1_c04070
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH 6 remove 389,882 - PGA1_c04040 0.11 +1.1 389,897 - PGA1_c04040 0.12 +0.9 389,919 + PGA1_c04040 0.14 -0.1 389,919 - PGA1_c04040 0.14 -2.1 389,934 + PGA1_c04040 0.15 -0.6 389,934 + PGA1_c04040 0.15 -0.1 389,942 - PGA1_c04040 0.16 +0.6 389,979 + PGA1_c04040 0.20 +1.0 389,980 + PGA1_c04040 0.20 +1.1 389,987 - PGA1_c04040 0.20 -0.8 389,988 - PGA1_c04040 0.20 +1.5 390,003 + PGA1_c04040 0.22 -2.4 390,011 - PGA1_c04040 0.23 +1.4 390,011 - PGA1_c04040 0.23 +1.5 390,034 + PGA1_c04040 0.25 +0.9 390,034 + PGA1_c04040 0.25 +1.1 390,034 + PGA1_c04040 0.25 +2.3 390,044 + PGA1_c04040 0.26 +0.8 390,052 - PGA1_c04040 0.26 +1.7 390,070 + PGA1_c04040 0.28 +0.1 390,070 + PGA1_c04040 0.28 +2.4 390,106 + PGA1_c04040 0.31 +1.7 390,114 - PGA1_c04040 0.32 -0.6 390,116 + PGA1_c04040 0.32 +1.1 390,153 + PGA1_c04040 0.36 +0.3 390,161 - PGA1_c04040 0.36 -0.8 390,161 - PGA1_c04040 0.36 +0.6 390,166 - PGA1_c04040 0.37 +1.1 390,171 + PGA1_c04040 0.37 +0.8 390,185 + PGA1_c04040 0.39 +1.2 390,193 - PGA1_c04040 0.39 +0.5 390,196 - PGA1_c04040 0.40 +1.7 390,237 - PGA1_c04040 0.44 -0.5 390,274 + PGA1_c04040 0.47 -1.3 390,274 + PGA1_c04040 0.47 +2.6 390,323 + PGA1_c04040 0.52 +0.4 390,323 + PGA1_c04040 0.52 -0.0 390,331 - PGA1_c04040 0.52 +1.1 390,337 + PGA1_c04040 0.53 +0.4 390,337 + PGA1_c04040 0.53 -0.3 390,337 + PGA1_c04040 0.53 -0.4 390,337 + PGA1_c04040 0.53 +1.9 390,345 - PGA1_c04040 0.54 +0.6 390,365 - PGA1_c04040 0.55 +0.9 390,365 - PGA1_c04040 0.55 +1.7 390,374 + PGA1_c04040 0.56 -0.3 390,400 + PGA1_c04040 0.59 +1.9 390,400 + PGA1_c04040 0.59 +1.4 390,400 + PGA1_c04040 0.59 +1.9 390,400 + PGA1_c04040 0.59 +1.4 390,400 + PGA1_c04040 0.59 +0.3 390,404 + PGA1_c04040 0.59 +2.1 390,408 - PGA1_c04040 0.59 -0.4 390,408 - PGA1_c04040 0.59 +0.7 390,408 - PGA1_c04040 0.59 +1.2 390,408 - PGA1_c04040 0.59 +3.1 390,408 - PGA1_c04040 0.59 +1.5 390,408 - PGA1_c04040 0.59 +1.2 390,418 - PGA1_c04040 0.60 +0.4 390,438 - PGA1_c04040 0.62 +0.7 390,439 + PGA1_c04040 0.62 +1.6 390,445 + PGA1_c04040 0.63 -0.0 390,445 + PGA1_c04040 0.63 +1.7 390,453 - PGA1_c04040 0.64 +0.6 390,461 + PGA1_c04040 0.64 -0.6 390,461 + PGA1_c04040 0.64 +0.9 390,496 + PGA1_c04040 0.68 +2.1 390,504 - PGA1_c04040 0.68 +0.8 390,597 + PGA1_c04040 0.77 +1.3 390,605 - PGA1_c04040 0.78 +1.0 390,605 - PGA1_c04040 0.78 +0.2 390,651 + PGA1_c04040 0.82 +0.4 390,654 - PGA1_c04040 0.82 -1.3 390,654 - PGA1_c04040 0.82 +0.3 390,681 + PGA1_c04040 0.85 +1.0 390,686 + PGA1_c04040 0.85 +0.1 390,686 + PGA1_c04040 0.85 -0.5 390,694 - PGA1_c04040 0.86 +0.5 390,715 + PGA1_c04040 0.88 +2.3 390,720 + PGA1_c04040 0.89 +1.4 390,720 + PGA1_c04040 0.89 +0.7 390,720 + PGA1_c04040 0.89 +0.4 390,720 + PGA1_c04040 0.89 +0.7 390,723 - PGA1_c04040 0.89 +1.0 390,728 - PGA1_c04040 0.89 +0.3 390,728 - PGA1_c04040 0.89 +0.8 390,826 - +1.4 390,851 + -0.3 390,851 + -0.6 390,851 + -0.1 390,859 - -0.6 390,879 + +1.2 390,879 + -1.1 390,887 - +1.0 390,888 + -1.9 390,892 - +0.0 390,909 - PGA1_c04050 0.12 +0.7 390,948 + PGA1_c04050 0.20 +2.6 390,999 - PGA1_c04050 0.31 +0.8 391,009 + PGA1_c04050 0.33 +0.4 391,047 + PGA1_c04050 0.41 -0.2 391,080 - PGA1_c04050 0.48 +1.0 391,080 - PGA1_c04050 0.48 -0.1 391,173 + PGA1_c04050 0.68 +2.2 391,181 - PGA1_c04050 0.69 +1.1 391,181 - PGA1_c04050 0.69 +1.3 391,181 - PGA1_c04050 0.69 +1.2 391,193 - PGA1_c04050 0.72 -1.1 391,201 + PGA1_c04050 0.73 +1.6 391,210 - PGA1_c04050 0.75 +0.3 391,225 + PGA1_c04050 0.78 +0.3 391,261 + PGA1_c04050 0.86 +1.3 391,280 - -0.5 391,379 - -0.3 391,380 - -1.8 391,380 - -2.8 391,380 - -1.9 391,440 + +2.6 391,493 + +1.3 391,494 + +1.6 391,580 - PGA1_c04060 0.17 +0.8 391,592 + PGA1_c04060 0.18 +1.5 391,642 + PGA1_c04060 0.25 +1.0 391,692 + PGA1_c04060 0.31 -0.1 391,719 + PGA1_c04060 0.35 +0.7 391,767 - PGA1_c04060 0.41 +1.4 391,808 - PGA1_c04060 0.46 -0.7 391,858 - PGA1_c04060 0.53 +0.9 391,866 - PGA1_c04060 0.54 +0.8 392,028 - PGA1_c04060 0.75 -2.0 392,028 - PGA1_c04060 0.75 +0.1 392,028 - PGA1_c04060 0.75 +0.3 392,073 - PGA1_c04060 0.81 -0.5 392,073 - PGA1_c04060 0.81 +1.1 392,080 + PGA1_c04060 0.82 +1.6 392,080 + PGA1_c04060 0.82 +0.9 392,080 + PGA1_c04060 0.82 +1.2 392,080 + PGA1_c04060 0.82 +0.1 392,080 + PGA1_c04060 0.82 -0.1 392,080 + PGA1_c04060 0.82 -0.3 392,088 - PGA1_c04060 0.83 +0.8 392,088 - PGA1_c04060 0.83 +1.8 392,088 - PGA1_c04060 0.83 +0.6 392,088 - PGA1_c04060 0.83 -0.2 392,088 - PGA1_c04060 0.83 -0.1 392,121 + PGA1_c04060 0.87 -1.1 392,151 + +1.0 392,178 - +0.9 392,217 + +1.2 392,217 + +0.7 392,268 + PGA1_c04070 0.16 +1.1 392,275 + PGA1_c04070 0.19 +0.9 392,276 - PGA1_c04070 0.19 +0.9 392,282 - PGA1_c04070 0.21 -1.1 392,283 - PGA1_c04070 0.21 -1.0
Or see this region's nucleotide sequence