Experiment: marine broth pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01780 and PGA1_262p01790 are separated by 91 nucleotides PGA1_262p01790 and PGA1_262p01800 overlap by 4 nucleotides PGA1_262p01800 and PGA1_262p01810 are separated by 14 nucleotides
PGA1_262p01780: PGA1_262p01780 - transcriptional regulator, LysR family, at 195,114 to 196,019
_262p01780
PGA1_262p01790: PGA1_262p01790 - aldehyde dehydrogenase, at 196,111 to 197,562
_262p01790
PGA1_262p01800: PGA1_262p01800 - putative membrane dipeptidase, at 197,559 to 198,536
_262p01800
PGA1_262p01810: PGA1_262p01810 - hypothetical protein, at 198,551 to 200,254
_262p01810
Position (kb) 196
197
198 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 195.124 kb on + strand at 195.132 kb on - strand at 195.132 kb on - strand at 195.134 kb on + strand at 195.134 kb on + strand at 195.159 kb on + strand at 195.173 kb on + strand at 195.173 kb on + strand at 195.181 kb on - strand at 195.181 kb on - strand at 195.181 kb on - strand at 195.260 kb on + strand, within PGA1_262p01780 at 195.268 kb on - strand, within PGA1_262p01780 at 195.527 kb on - strand, within PGA1_262p01780 at 195.588 kb on + strand, within PGA1_262p01780 at 195.808 kb on + strand, within PGA1_262p01780 at 195.808 kb on + strand, within PGA1_262p01780 at 196.061 kb on + strand at 196.072 kb on + strand at 196.072 kb on + strand at 196.074 kb on + strand at 196.080 kb on - strand at 196.151 kb on - strand at 196.192 kb on - strand at 196.192 kb on - strand at 196.226 kb on + strand at 196.255 kb on - strand at 196.280 kb on - strand, within PGA1_262p01790 at 196.280 kb on - strand, within PGA1_262p01790 at 196.354 kb on - strand, within PGA1_262p01790 at 196.383 kb on + strand, within PGA1_262p01790 at 196.421 kb on + strand, within PGA1_262p01790 at 196.431 kb on + strand, within PGA1_262p01790 at 196.439 kb on - strand, within PGA1_262p01790 at 196.478 kb on - strand, within PGA1_262p01790 at 196.540 kb on + strand, within PGA1_262p01790 at 196.602 kb on + strand, within PGA1_262p01790 at 196.757 kb on + strand, within PGA1_262p01790 at 196.842 kb on + strand, within PGA1_262p01790 at 196.895 kb on + strand, within PGA1_262p01790 at 197.149 kb on - strand, within PGA1_262p01790 at 197.189 kb on + strand, within PGA1_262p01790 at 197.377 kb on - strand, within PGA1_262p01790 at 197.474 kb on + strand at 197.482 kb on - strand at 197.482 kb on - strand at 197.482 kb on - strand at 197.495 kb on + strand at 197.541 kb on - strand at 197.576 kb on + strand at 197.730 kb on - strand, within PGA1_262p01800 at 197.730 kb on - strand, within PGA1_262p01800 at 197.813 kb on + strand, within PGA1_262p01800 at 198.074 kb on + strand, within PGA1_262p01800 at 198.074 kb on + strand, within PGA1_262p01800 at 198.082 kb on - strand, within PGA1_262p01800 at 198.089 kb on - strand, within PGA1_262p01800 at 198.240 kb on + strand, within PGA1_262p01800 at 198.240 kb on + strand, within PGA1_262p01800 at 198.240 kb on + strand, within PGA1_262p01800 at 198.274 kb on + strand, within PGA1_262p01800 at 198.279 kb on + strand, within PGA1_262p01800 at 198.362 kb on - strand, within PGA1_262p01800 at 198.448 kb on + strand at 198.456 kb on - strand at 198.470 kb on + strand at 198.479 kb on + strand at 198.479 kb on + strand at 198.525 kb on + strand at 198.555 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH 6 remove 195,124 + +1.0 195,132 - -0.7 195,132 - -2.1 195,134 + +0.9 195,134 + +0.1 195,159 + -2.0 195,173 + -1.1 195,173 + +1.0 195,181 - +1.0 195,181 - +1.5 195,181 - -1.4 195,260 + PGA1_262p01780 0.16 +0.5 195,268 - PGA1_262p01780 0.17 +0.4 195,527 - PGA1_262p01780 0.46 -0.4 195,588 + PGA1_262p01780 0.52 -1.5 195,808 + PGA1_262p01780 0.77 +1.8 195,808 + PGA1_262p01780 0.77 +1.4 196,061 + +0.6 196,072 + +2.0 196,072 + -1.0 196,074 + -0.4 196,080 - -2.5 196,151 - +1.0 196,192 - +0.3 196,192 - -2.0 196,226 + -0.5 196,255 - -0.1 196,280 - PGA1_262p01790 0.12 -1.8 196,280 - PGA1_262p01790 0.12 +0.7 196,354 - PGA1_262p01790 0.17 -1.4 196,383 + PGA1_262p01790 0.19 -0.6 196,421 + PGA1_262p01790 0.21 -0.1 196,431 + PGA1_262p01790 0.22 +0.6 196,439 - PGA1_262p01790 0.23 -0.2 196,478 - PGA1_262p01790 0.25 +0.0 196,540 + PGA1_262p01790 0.30 +1.2 196,602 + PGA1_262p01790 0.34 -1.6 196,757 + PGA1_262p01790 0.44 +0.1 196,842 + PGA1_262p01790 0.50 -0.4 196,895 + PGA1_262p01790 0.54 -0.1 197,149 - PGA1_262p01790 0.71 +0.4 197,189 + PGA1_262p01790 0.74 +0.3 197,377 - PGA1_262p01790 0.87 +0.2 197,474 + +1.7 197,482 - -0.6 197,482 - +0.2 197,482 - -3.7 197,495 + -1.0 197,541 - +2.0 197,576 + +0.2 197,730 - PGA1_262p01800 0.17 +0.6 197,730 - PGA1_262p01800 0.17 -2.6 197,813 + PGA1_262p01800 0.26 +0.7 198,074 + PGA1_262p01800 0.53 -1.6 198,074 + PGA1_262p01800 0.53 +0.0 198,082 - PGA1_262p01800 0.53 -0.1 198,089 - PGA1_262p01800 0.54 +1.3 198,240 + PGA1_262p01800 0.70 +1.5 198,240 + PGA1_262p01800 0.70 +0.4 198,240 + PGA1_262p01800 0.70 -2.1 198,274 + PGA1_262p01800 0.73 +0.4 198,279 + PGA1_262p01800 0.74 +1.2 198,362 - PGA1_262p01800 0.82 -2.2 198,448 + +0.5 198,456 - -0.2 198,470 + +2.3 198,479 + -0.3 198,479 + +0.9 198,525 + +1.3 198,555 - +0.9
Or see this region's nucleotide sequence