Experiment: marine broth pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01380 and PGA1_262p01390 are separated by 3 nucleotides PGA1_262p01390 and PGA1_262p01400 are separated by 144 nucleotides
PGA1_262p01380: PGA1_262p01380 - aldehyde dehydrogenase, at 148,616 to 150,067
_262p01380
PGA1_262p01390: PGA1_262p01390 - hypothetical protein, at 150,071 to 150,310
_262p01390
PGA1_262p01400: PGA1_262p01400 - dimethylglycine dehydrogenase DmgdH, at 150,455 to 152,875
_262p01400
Position (kb) 150
151 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 149.103 kb on - strand, within PGA1_262p01380 at 149.117 kb on + strand, within PGA1_262p01380 at 149.124 kb on - strand, within PGA1_262p01380 at 149.125 kb on - strand, within PGA1_262p01380 at 149.471 kb on + strand, within PGA1_262p01380 at 149.536 kb on - strand, within PGA1_262p01380 at 149.536 kb on - strand, within PGA1_262p01380 at 149.726 kb on + strand, within PGA1_262p01380 at 149.726 kb on + strand, within PGA1_262p01380 at 149.918 kb on + strand, within PGA1_262p01380 at 149.926 kb on - strand at 150.019 kb on + strand at 150.019 kb on + strand at 150.019 kb on + strand at 150.019 kb on + strand at 150.027 kb on - strand at 150.027 kb on - strand at 150.066 kb on + strand at 150.092 kb on - strand at 150.134 kb on - strand, within PGA1_262p01390 at 150.150 kb on - strand, within PGA1_262p01390 at 150.267 kb on - strand, within PGA1_262p01390 at 150.278 kb on + strand, within PGA1_262p01390 at 150.286 kb on - strand, within PGA1_262p01390 at 150.286 kb on - strand, within PGA1_262p01390 at 150.358 kb on + strand at 150.366 kb on - strand at 150.447 kb on + strand at 150.470 kb on - strand at 150.558 kb on + strand at 150.588 kb on + strand at 150.689 kb on + strand at 150.697 kb on - strand, within PGA1_262p01400 at 150.706 kb on + strand, within PGA1_262p01400 at 150.729 kb on - strand, within PGA1_262p01400 at 150.734 kb on - strand, within PGA1_262p01400 at 150.778 kb on + strand, within PGA1_262p01400 at 150.813 kb on + strand, within PGA1_262p01400 at 150.823 kb on + strand, within PGA1_262p01400 at 150.830 kb on + strand, within PGA1_262p01400 at 151.036 kb on - strand, within PGA1_262p01400 at 151.074 kb on - strand, within PGA1_262p01400 at 151.229 kb on + strand, within PGA1_262p01400 at 151.243 kb on + strand, within PGA1_262p01400
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH 6 remove 149,103 - PGA1_262p01380 0.34 -1.8 149,117 + PGA1_262p01380 0.35 -2.3 149,124 - PGA1_262p01380 0.35 -0.4 149,125 - PGA1_262p01380 0.35 +0.0 149,471 + PGA1_262p01380 0.59 +0.0 149,536 - PGA1_262p01380 0.63 -0.1 149,536 - PGA1_262p01380 0.63 +0.7 149,726 + PGA1_262p01380 0.76 +0.8 149,726 + PGA1_262p01380 0.76 -2.9 149,918 + PGA1_262p01380 0.90 +0.2 149,926 - -0.1 150,019 + -0.7 150,019 + -0.7 150,019 + -1.5 150,019 + -1.5 150,027 - -2.0 150,027 - -0.8 150,066 + -2.7 150,092 - +0.0 150,134 - PGA1_262p01390 0.26 -0.4 150,150 - PGA1_262p01390 0.33 +0.0 150,267 - PGA1_262p01390 0.82 -1.0 150,278 + PGA1_262p01390 0.86 -0.3 150,286 - PGA1_262p01390 0.90 -2.5 150,286 - PGA1_262p01390 0.90 -0.4 150,358 + -0.6 150,366 - -0.8 150,447 + +0.2 150,470 - +1.5 150,558 + +0.1 150,588 + +1.0 150,689 + -2.7 150,697 - PGA1_262p01400 0.10 +0.2 150,706 + PGA1_262p01400 0.10 +1.8 150,729 - PGA1_262p01400 0.11 +0.5 150,734 - PGA1_262p01400 0.12 -2.3 150,778 + PGA1_262p01400 0.13 -0.8 150,813 + PGA1_262p01400 0.15 +0.1 150,823 + PGA1_262p01400 0.15 -0.5 150,830 + PGA1_262p01400 0.15 +0.6 151,036 - PGA1_262p01400 0.24 +0.3 151,074 - PGA1_262p01400 0.26 +0.1 151,229 + PGA1_262p01400 0.32 -0.2 151,243 + PGA1_262p01400 0.33 -0.7
Or see this region's nucleotide sequence