Experiment: marine broth pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00910 and PGA1_262p00920 are separated by 83 nucleotides PGA1_262p00920 and PGA1_262p00930 overlap by 4 nucleotides PGA1_262p00930 and PGA1_262p00940 are separated by 40 nucleotides
PGA1_262p00910: PGA1_262p00910 - putative cation transort protein, at 101,847 to 102,404
_262p00910
PGA1_262p00920: PGA1_262p00920 - Membrane proteins related to metalloendopeptidases, at 102,488 to 103,174
_262p00920
PGA1_262p00930: PGA1_262p00930 - hypothetical protein, at 103,171 to 103,752
_262p00930
PGA1_262p00940: PGA1_262p00940 - acyl-CoA dehydrogenase TdaE, at 103,793 to 104,986
_262p00940
Position (kb) 103
104 Strain fitness (log2 ratio) -2
-1
0
1
2 at 102.323 kb on - strand, within PGA1_262p00910 at 102.344 kb on + strand, within PGA1_262p00910 at 102.352 kb on - strand at 102.406 kb on + strand at 102.532 kb on - strand at 102.532 kb on - strand at 102.648 kb on + strand, within PGA1_262p00920 at 102.726 kb on + strand, within PGA1_262p00920 at 102.737 kb on + strand, within PGA1_262p00920 at 102.745 kb on - strand, within PGA1_262p00920 at 102.870 kb on + strand, within PGA1_262p00920 at 102.873 kb on - strand, within PGA1_262p00920 at 102.921 kb on + strand, within PGA1_262p00920 at 102.990 kb on + strand, within PGA1_262p00920 at 103.184 kb on + strand at 103.238 kb on - strand, within PGA1_262p00930 at 103.238 kb on - strand, within PGA1_262p00930 at 103.290 kb on + strand, within PGA1_262p00930 at 103.498 kb on + strand, within PGA1_262p00930 at 103.748 kb on - strand at 104.045 kb on + strand, within PGA1_262p00940 at 104.288 kb on - strand, within PGA1_262p00940 at 104.375 kb on - strand, within PGA1_262p00940 at 104.601 kb on - strand, within PGA1_262p00940 at 104.700 kb on - strand, within PGA1_262p00940 at 104.709 kb on + strand, within PGA1_262p00940
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH 6 remove 102,323 - PGA1_262p00910 0.85 -0.1 102,344 + PGA1_262p00910 0.89 -1.0 102,352 - -1.1 102,406 + +1.5 102,532 - -2.0 102,532 - -0.5 102,648 + PGA1_262p00920 0.23 -1.5 102,726 + PGA1_262p00920 0.35 +1.0 102,737 + PGA1_262p00920 0.36 +0.9 102,745 - PGA1_262p00920 0.37 +0.1 102,870 + PGA1_262p00920 0.56 +1.0 102,873 - PGA1_262p00920 0.56 +1.7 102,921 + PGA1_262p00920 0.63 -0.1 102,990 + PGA1_262p00920 0.73 -0.6 103,184 + +0.6 103,238 - PGA1_262p00930 0.12 -1.9 103,238 - PGA1_262p00930 0.12 +1.1 103,290 + PGA1_262p00930 0.20 +0.9 103,498 + PGA1_262p00930 0.56 +2.6 103,748 - +1.4 104,045 + PGA1_262p00940 0.21 +1.2 104,288 - PGA1_262p00940 0.41 -1.0 104,375 - PGA1_262p00940 0.49 +0.2 104,601 - PGA1_262p00940 0.68 -2.7 104,700 - PGA1_262p00940 0.76 +2.6 104,709 + PGA1_262p00940 0.77 -1.8
Or see this region's nucleotide sequence