Experiment: marine broth pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00780 and PGA1_262p00790 are separated by 97 nucleotides PGA1_262p00790 and PGA1_262p00800 are separated by 103 nucleotides PGA1_262p00800 and PGA1_262p00810 are separated by 34 nucleotides PGA1_262p00810 and PGA1_262p00820 are separated by 79 nucleotides
PGA1_262p00780: PGA1_262p00780 - NAD dependent epimerase/dehydratase, at 87,330 to 88,439
_262p00780
PGA1_262p00790: PGA1_262p00790 - hypothetical protein, at 88,537 to 88,668
_262p00790
PGA1_262p00800: PGA1_262p00800 - phenylacetic acid degradation protein PaaZ, at 88,772 to 90,904
_262p00800
PGA1_262p00810: PGA1_262p00810 - putative flavoprotein, HFCD family, at 90,939 to 91,508
_262p00810
PGA1_262p00820: PGA1_262p00820 - hypothetical protein, at 91,588 to 92,028
_262p00820
Position (kb) 88
89
90
91 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 87.823 kb on + strand, within PGA1_262p00780 at 87.833 kb on + strand, within PGA1_262p00780 at 87.911 kb on + strand, within PGA1_262p00780 at 87.954 kb on + strand, within PGA1_262p00780 at 87.973 kb on + strand, within PGA1_262p00780 at 88.026 kb on - strand, within PGA1_262p00780 at 88.026 kb on - strand, within PGA1_262p00780 at 88.052 kb on + strand, within PGA1_262p00780 at 88.441 kb on + strand at 88.721 kb on + strand at 88.764 kb on + strand at 88.764 kb on + strand at 88.772 kb on - strand at 88.772 kb on - strand at 88.861 kb on - strand at 88.879 kb on + strand at 88.892 kb on - strand at 88.903 kb on - strand at 88.943 kb on + strand at 88.988 kb on + strand, within PGA1_262p00800 at 89.033 kb on + strand, within PGA1_262p00800 at 89.071 kb on + strand, within PGA1_262p00800 at 89.110 kb on + strand, within PGA1_262p00800 at 89.122 kb on + strand, within PGA1_262p00800 at 89.132 kb on + strand, within PGA1_262p00800 at 89.141 kb on + strand, within PGA1_262p00800 at 89.159 kb on + strand, within PGA1_262p00800 at 89.232 kb on + strand, within PGA1_262p00800 at 89.240 kb on - strand, within PGA1_262p00800 at 89.240 kb on - strand, within PGA1_262p00800 at 89.438 kb on + strand, within PGA1_262p00800 at 89.485 kb on + strand, within PGA1_262p00800 at 89.612 kb on - strand, within PGA1_262p00800 at 89.678 kb on - strand, within PGA1_262p00800 at 89.731 kb on + strand, within PGA1_262p00800 at 89.840 kb on + strand, within PGA1_262p00800 at 89.888 kb on + strand, within PGA1_262p00800 at 89.947 kb on - strand, within PGA1_262p00800 at 90.038 kb on + strand, within PGA1_262p00800 at 90.057 kb on + strand, within PGA1_262p00800 at 90.076 kb on + strand, within PGA1_262p00800 at 90.194 kb on - strand, within PGA1_262p00800 at 90.209 kb on + strand, within PGA1_262p00800 at 90.224 kb on - strand, within PGA1_262p00800 at 90.226 kb on + strand, within PGA1_262p00800 at 90.234 kb on - strand, within PGA1_262p00800 at 90.234 kb on - strand, within PGA1_262p00800 at 90.345 kb on - strand, within PGA1_262p00800 at 90.403 kb on + strand, within PGA1_262p00800 at 90.533 kb on + strand, within PGA1_262p00800 at 90.548 kb on + strand, within PGA1_262p00800 at 90.548 kb on + strand, within PGA1_262p00800 at 90.556 kb on - strand, within PGA1_262p00800 at 90.596 kb on + strand, within PGA1_262p00800 at 90.596 kb on + strand, within PGA1_262p00800 at 90.599 kb on - strand, within PGA1_262p00800 at 90.599 kb on - strand, within PGA1_262p00800 at 90.699 kb on + strand at 90.745 kb on + strand at 90.798 kb on - strand at 90.832 kb on + strand at 90.840 kb on - strand at 90.949 kb on - strand at 90.996 kb on - strand, within PGA1_262p00810 at 91.042 kb on + strand, within PGA1_262p00810 at 91.042 kb on + strand, within PGA1_262p00810 at 91.050 kb on - strand, within PGA1_262p00810 at 91.061 kb on + strand, within PGA1_262p00810 at 91.069 kb on - strand, within PGA1_262p00810 at 91.069 kb on - strand, within PGA1_262p00810 at 91.147 kb on - strand, within PGA1_262p00810 at 91.265 kb on - strand, within PGA1_262p00810 at 91.293 kb on + strand, within PGA1_262p00810 at 91.375 kb on + strand, within PGA1_262p00810 at 91.569 kb on - strand at 91.585 kb on + strand at 91.791 kb on - strand, within PGA1_262p00820 at 91.871 kb on + strand, within PGA1_262p00820
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH 6 remove 87,823 + PGA1_262p00780 0.44 +0.8 87,833 + PGA1_262p00780 0.45 -0.5 87,911 + PGA1_262p00780 0.52 +0.0 87,954 + PGA1_262p00780 0.56 +1.0 87,973 + PGA1_262p00780 0.58 +0.1 88,026 - PGA1_262p00780 0.63 +1.1 88,026 - PGA1_262p00780 0.63 +2.4 88,052 + PGA1_262p00780 0.65 +0.5 88,441 + +0.0 88,721 + +1.4 88,764 + -0.9 88,764 + -1.9 88,772 - +0.5 88,772 - +0.2 88,861 - +0.0 88,879 + +2.2 88,892 - +1.7 88,903 - +1.3 88,943 + +0.0 88,988 + PGA1_262p00800 0.10 +1.0 89,033 + PGA1_262p00800 0.12 +0.3 89,071 + PGA1_262p00800 0.14 +0.1 89,110 + PGA1_262p00800 0.16 +0.9 89,122 + PGA1_262p00800 0.16 +1.2 89,132 + PGA1_262p00800 0.17 +0.0 89,141 + PGA1_262p00800 0.17 +0.3 89,159 + PGA1_262p00800 0.18 +0.4 89,232 + PGA1_262p00800 0.22 +0.2 89,240 - PGA1_262p00800 0.22 +2.1 89,240 - PGA1_262p00800 0.22 +1.5 89,438 + PGA1_262p00800 0.31 -0.4 89,485 + PGA1_262p00800 0.33 +0.3 89,612 - PGA1_262p00800 0.39 +0.9 89,678 - PGA1_262p00800 0.42 +0.5 89,731 + PGA1_262p00800 0.45 +1.5 89,840 + PGA1_262p00800 0.50 -0.1 89,888 + PGA1_262p00800 0.52 +1.0 89,947 - PGA1_262p00800 0.55 +1.1 90,038 + PGA1_262p00800 0.59 +0.6 90,057 + PGA1_262p00800 0.60 +1.4 90,076 + PGA1_262p00800 0.61 +0.0 90,194 - PGA1_262p00800 0.67 +0.5 90,209 + PGA1_262p00800 0.67 -2.3 90,224 - PGA1_262p00800 0.68 +1.0 90,226 + PGA1_262p00800 0.68 +1.0 90,234 - PGA1_262p00800 0.69 +2.3 90,234 - PGA1_262p00800 0.69 +2.1 90,345 - PGA1_262p00800 0.74 -0.3 90,403 + PGA1_262p00800 0.76 -0.1 90,533 + PGA1_262p00800 0.83 -1.0 90,548 + PGA1_262p00800 0.83 +0.9 90,548 + PGA1_262p00800 0.83 -0.4 90,556 - PGA1_262p00800 0.84 +0.5 90,596 + PGA1_262p00800 0.86 -1.5 90,596 + PGA1_262p00800 0.86 +1.0 90,599 - PGA1_262p00800 0.86 +0.1 90,599 - PGA1_262p00800 0.86 +0.6 90,699 + -0.1 90,745 + +0.7 90,798 - +2.2 90,832 + -0.3 90,840 - +2.0 90,949 - +0.8 90,996 - PGA1_262p00810 0.10 -0.0 91,042 + PGA1_262p00810 0.18 +0.7 91,042 + PGA1_262p00810 0.18 +1.3 91,050 - PGA1_262p00810 0.19 +1.0 91,061 + PGA1_262p00810 0.21 +1.1 91,069 - PGA1_262p00810 0.23 -0.3 91,069 - PGA1_262p00810 0.23 -3.1 91,147 - PGA1_262p00810 0.36 +1.1 91,265 - PGA1_262p00810 0.57 -0.4 91,293 + PGA1_262p00810 0.62 -0.4 91,375 + PGA1_262p00810 0.76 +2.0 91,569 - +0.8 91,585 + -1.2 91,791 - PGA1_262p00820 0.46 -2.3 91,871 + PGA1_262p00820 0.64 -0.3
Or see this region's nucleotide sequence