Experiment: marine broth pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00770 and PGA1_262p00780 are separated by 4 nucleotides PGA1_262p00780 and PGA1_262p00790 are separated by 97 nucleotides PGA1_262p00790 and PGA1_262p00800 are separated by 103 nucleotides
PGA1_262p00770: PGA1_262p00770 - putative lytic murein transglycosylase, at 86,081 to 87,325
_262p00770
PGA1_262p00780: PGA1_262p00780 - NAD dependent epimerase/dehydratase, at 87,330 to 88,439
_262p00780
PGA1_262p00790: PGA1_262p00790 - hypothetical protein, at 88,537 to 88,668
_262p00790
PGA1_262p00800: PGA1_262p00800 - phenylacetic acid degradation protein PaaZ, at 88,772 to 90,904
_262p00800
Position (kb) 87
88
89 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 86.512 kb on + strand, within PGA1_262p00770 at 86.556 kb on + strand, within PGA1_262p00770 at 86.635 kb on + strand, within PGA1_262p00770 at 86.906 kb on - strand, within PGA1_262p00770 at 86.928 kb on - strand, within PGA1_262p00770 at 87.234 kb on - strand at 87.306 kb on + strand at 87.452 kb on + strand, within PGA1_262p00780 at 87.452 kb on + strand, within PGA1_262p00780 at 87.452 kb on + strand, within PGA1_262p00780 at 87.452 kb on + strand, within PGA1_262p00780 at 87.452 kb on + strand, within PGA1_262p00780 at 87.460 kb on - strand, within PGA1_262p00780 at 87.520 kb on + strand, within PGA1_262p00780 at 87.596 kb on + strand, within PGA1_262p00780 at 87.598 kb on + strand, within PGA1_262p00780 at 87.641 kb on + strand, within PGA1_262p00780 at 87.746 kb on + strand, within PGA1_262p00780 at 87.823 kb on + strand, within PGA1_262p00780 at 87.833 kb on + strand, within PGA1_262p00780 at 87.911 kb on + strand, within PGA1_262p00780 at 87.954 kb on + strand, within PGA1_262p00780 at 87.973 kb on + strand, within PGA1_262p00780 at 88.026 kb on - strand, within PGA1_262p00780 at 88.026 kb on - strand, within PGA1_262p00780 at 88.052 kb on + strand, within PGA1_262p00780 at 88.441 kb on + strand at 88.721 kb on + strand at 88.764 kb on + strand at 88.764 kb on + strand at 88.772 kb on - strand at 88.772 kb on - strand at 88.861 kb on - strand at 88.879 kb on + strand at 88.892 kb on - strand at 88.903 kb on - strand at 88.943 kb on + strand at 88.988 kb on + strand, within PGA1_262p00800 at 89.033 kb on + strand, within PGA1_262p00800 at 89.071 kb on + strand, within PGA1_262p00800 at 89.110 kb on + strand, within PGA1_262p00800 at 89.122 kb on + strand, within PGA1_262p00800 at 89.132 kb on + strand, within PGA1_262p00800 at 89.141 kb on + strand, within PGA1_262p00800 at 89.159 kb on + strand, within PGA1_262p00800 at 89.232 kb on + strand, within PGA1_262p00800 at 89.240 kb on - strand, within PGA1_262p00800 at 89.240 kb on - strand, within PGA1_262p00800 at 89.438 kb on + strand, within PGA1_262p00800
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH 6 remove 86,512 + PGA1_262p00770 0.35 +0.5 86,556 + PGA1_262p00770 0.38 +1.0 86,635 + PGA1_262p00770 0.44 +0.2 86,906 - PGA1_262p00770 0.66 -1.0 86,928 - PGA1_262p00770 0.68 -1.8 87,234 - +0.3 87,306 + +2.0 87,452 + PGA1_262p00780 0.11 +0.7 87,452 + PGA1_262p00780 0.11 -0.7 87,452 + PGA1_262p00780 0.11 -1.0 87,452 + PGA1_262p00780 0.11 +0.6 87,452 + PGA1_262p00780 0.11 -1.0 87,460 - PGA1_262p00780 0.12 +0.3 87,520 + PGA1_262p00780 0.17 -0.2 87,596 + PGA1_262p00780 0.24 +0.2 87,598 + PGA1_262p00780 0.24 +0.6 87,641 + PGA1_262p00780 0.28 -0.7 87,746 + PGA1_262p00780 0.37 +3.3 87,823 + PGA1_262p00780 0.44 +0.8 87,833 + PGA1_262p00780 0.45 -0.5 87,911 + PGA1_262p00780 0.52 +0.0 87,954 + PGA1_262p00780 0.56 +1.0 87,973 + PGA1_262p00780 0.58 +0.1 88,026 - PGA1_262p00780 0.63 +1.1 88,026 - PGA1_262p00780 0.63 +2.4 88,052 + PGA1_262p00780 0.65 +0.5 88,441 + +0.0 88,721 + +1.4 88,764 + -0.9 88,764 + -1.9 88,772 - +0.5 88,772 - +0.2 88,861 - +0.0 88,879 + +2.2 88,892 - +1.7 88,903 - +1.3 88,943 + +0.0 88,988 + PGA1_262p00800 0.10 +1.0 89,033 + PGA1_262p00800 0.12 +0.3 89,071 + PGA1_262p00800 0.14 +0.1 89,110 + PGA1_262p00800 0.16 +0.9 89,122 + PGA1_262p00800 0.16 +1.2 89,132 + PGA1_262p00800 0.17 +0.0 89,141 + PGA1_262p00800 0.17 +0.3 89,159 + PGA1_262p00800 0.18 +0.4 89,232 + PGA1_262p00800 0.22 +0.2 89,240 - PGA1_262p00800 0.22 +2.1 89,240 - PGA1_262p00800 0.22 +1.5 89,438 + PGA1_262p00800 0.31 -0.4
Or see this region's nucleotide sequence