Experiment: marine broth pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00650 and PGA1_262p00660 are separated by 83 nucleotides PGA1_262p00660 and PGA1_262p00670 overlap by 11 nucleotides PGA1_262p00670 and PGA1_262p00680 are separated by 108 nucleotides PGA1_262p00680 and PGA1_262p00690 are separated by 161 nucleotides
PGA1_262p00650: PGA1_262p00650 - putative lytic murein transglycosylase, at 75,257 to 76,432
_262p00650
PGA1_262p00660: PGA1_262p00660 - Predicted periplasmic protein, at 76,516 to 77,337
_262p00660
PGA1_262p00670: PGA1_262p00670 - hypothetical protein, at 77,327 to 78,673
_262p00670
PGA1_262p00680: PGA1_262p00680 - Uncharacterized membrane protein, at 78,782 to 79,336
_262p00680
PGA1_262p00690: PGA1_262p00690 - stressosome protein rsbRA-like protein, at 79,498 to 80,373
_262p00690
Position (kb) 77
78
79 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 76.380 kb on - strand at 76.467 kb on - strand at 76.474 kb on - strand at 76.545 kb on + strand at 76.837 kb on + strand, within PGA1_262p00660 at 76.949 kb on + strand, within PGA1_262p00660 at 77.022 kb on - strand, within PGA1_262p00660 at 77.059 kb on + strand, within PGA1_262p00660 at 77.189 kb on + strand, within PGA1_262p00660 at 77.215 kb on + strand, within PGA1_262p00660 at 77.303 kb on + strand at 77.475 kb on - strand, within PGA1_262p00670 at 77.637 kb on + strand, within PGA1_262p00670 at 77.652 kb on - strand, within PGA1_262p00670 at 77.664 kb on + strand, within PGA1_262p00670 at 77.670 kb on - strand, within PGA1_262p00670 at 77.693 kb on + strand, within PGA1_262p00670 at 77.770 kb on + strand, within PGA1_262p00670 at 77.770 kb on + strand, within PGA1_262p00670 at 77.778 kb on - strand, within PGA1_262p00670 at 77.778 kb on - strand, within PGA1_262p00670 at 77.778 kb on - strand, within PGA1_262p00670 at 77.780 kb on + strand, within PGA1_262p00670 at 77.826 kb on + strand, within PGA1_262p00670 at 77.932 kb on + strand, within PGA1_262p00670 at 77.932 kb on + strand, within PGA1_262p00670 at 77.940 kb on - strand, within PGA1_262p00670 at 77.975 kb on - strand, within PGA1_262p00670 at 77.977 kb on + strand, within PGA1_262p00670 at 78.082 kb on - strand, within PGA1_262p00670 at 78.082 kb on - strand, within PGA1_262p00670 at 78.123 kb on - strand, within PGA1_262p00670 at 78.167 kb on + strand, within PGA1_262p00670 at 78.167 kb on + strand, within PGA1_262p00670 at 78.175 kb on - strand, within PGA1_262p00670 at 78.242 kb on - strand, within PGA1_262p00670 at 78.242 kb on - strand, within PGA1_262p00670 at 78.263 kb on + strand, within PGA1_262p00670 at 78.263 kb on + strand, within PGA1_262p00670 at 78.271 kb on - strand, within PGA1_262p00670 at 78.366 kb on - strand, within PGA1_262p00670 at 78.367 kb on - strand, within PGA1_262p00670 at 78.431 kb on + strand, within PGA1_262p00670 at 78.439 kb on - strand, within PGA1_262p00670 at 78.498 kb on - strand, within PGA1_262p00670 at 78.537 kb on - strand, within PGA1_262p00670 at 78.825 kb on + strand at 78.830 kb on + strand at 78.838 kb on - strand, within PGA1_262p00680 at 78.838 kb on - strand, within PGA1_262p00680 at 79.096 kb on + strand, within PGA1_262p00680 at 79.210 kb on - strand, within PGA1_262p00680 at 79.229 kb on - strand, within PGA1_262p00680 at 79.261 kb on - strand, within PGA1_262p00680 at 79.279 kb on + strand, within PGA1_262p00680 at 79.279 kb on + strand, within PGA1_262p00680 at 79.349 kb on - strand at 79.451 kb on - strand at 79.493 kb on - strand at 79.514 kb on + strand at 79.514 kb on + strand at 79.539 kb on + strand at 79.602 kb on - strand, within PGA1_262p00690 at 79.636 kb on - strand, within PGA1_262p00690 at 79.638 kb on + strand, within PGA1_262p00690 at 79.638 kb on + strand, within PGA1_262p00690 at 79.641 kb on - strand, within PGA1_262p00690 at 79.646 kb on - strand, within PGA1_262p00690
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH 6 remove 76,380 - +0.0 76,467 - -0.6 76,474 - -0.1 76,545 + +0.7 76,837 + PGA1_262p00660 0.39 -2.2 76,949 + PGA1_262p00660 0.53 +0.4 77,022 - PGA1_262p00660 0.62 +1.1 77,059 + PGA1_262p00660 0.66 +0.6 77,189 + PGA1_262p00660 0.82 +1.2 77,215 + PGA1_262p00660 0.85 +1.5 77,303 + +0.8 77,475 - PGA1_262p00670 0.11 +0.3 77,637 + PGA1_262p00670 0.23 +0.1 77,652 - PGA1_262p00670 0.24 +0.3 77,664 + PGA1_262p00670 0.25 -1.6 77,670 - PGA1_262p00670 0.25 -0.2 77,693 + PGA1_262p00670 0.27 +0.5 77,770 + PGA1_262p00670 0.33 +0.4 77,770 + PGA1_262p00670 0.33 +0.0 77,778 - PGA1_262p00670 0.33 +2.9 77,778 - PGA1_262p00670 0.33 -2.5 77,778 - PGA1_262p00670 0.33 +0.0 77,780 + PGA1_262p00670 0.34 -1.8 77,826 + PGA1_262p00670 0.37 -0.7 77,932 + PGA1_262p00670 0.45 +0.7 77,932 + PGA1_262p00670 0.45 -0.1 77,940 - PGA1_262p00670 0.46 -1.1 77,975 - PGA1_262p00670 0.48 +0.1 77,977 + PGA1_262p00670 0.48 -0.7 78,082 - PGA1_262p00670 0.56 +0.1 78,082 - PGA1_262p00670 0.56 -0.3 78,123 - PGA1_262p00670 0.59 -0.3 78,167 + PGA1_262p00670 0.62 +0.4 78,167 + PGA1_262p00670 0.62 -2.6 78,175 - PGA1_262p00670 0.63 +0.9 78,242 - PGA1_262p00670 0.68 +0.7 78,242 - PGA1_262p00670 0.68 +0.5 78,263 + PGA1_262p00670 0.69 -1.6 78,263 + PGA1_262p00670 0.69 -1.2 78,271 - PGA1_262p00670 0.70 -0.9 78,366 - PGA1_262p00670 0.77 -0.1 78,367 - PGA1_262p00670 0.77 +1.5 78,431 + PGA1_262p00670 0.82 +0.7 78,439 - PGA1_262p00670 0.83 -0.7 78,498 - PGA1_262p00670 0.87 -0.2 78,537 - PGA1_262p00670 0.90 -0.8 78,825 + +0.4 78,830 + +1.2 78,838 - PGA1_262p00680 0.10 -1.0 78,838 - PGA1_262p00680 0.10 +0.8 79,096 + PGA1_262p00680 0.57 +0.9 79,210 - PGA1_262p00680 0.77 -0.4 79,229 - PGA1_262p00680 0.81 -1.7 79,261 - PGA1_262p00680 0.86 +0.6 79,279 + PGA1_262p00680 0.90 +0.2 79,279 + PGA1_262p00680 0.90 -0.9 79,349 - +0.4 79,451 - -0.5 79,493 - -2.0 79,514 + +1.1 79,514 + +1.4 79,539 + -0.9 79,602 - PGA1_262p00690 0.12 -0.4 79,636 - PGA1_262p00690 0.16 -0.6 79,638 + PGA1_262p00690 0.16 -1.8 79,638 + PGA1_262p00690 0.16 -0.5 79,641 - PGA1_262p00690 0.16 +0.6 79,646 - PGA1_262p00690 0.17 +0.5
Or see this region's nucleotide sequence