Experiment: marine broth pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00260 and PGA1_262p00270 are separated by 155 nucleotides PGA1_262p00270 and PGA1_262p00280 are separated by 93 nucleotides PGA1_262p00280 and PGA1_262p00290 are separated by 200 nucleotides PGA1_262p00290 and PGA1_262p00300 are separated by 148 nucleotides
PGA1_262p00260: PGA1_262p00260 - hypothetical protein, at 30,070 to 30,510
_262p00260
PGA1_262p00270: PGA1_262p00270 - transcriptional regulator, GntR family, at 30,666 to 31,334
_262p00270
PGA1_262p00280: PGA1_262p00280 - putative proline racemase, at 31,428 to 32,453
_262p00280
PGA1_262p00290: PGA1_262p00290 - putative transcriptional regulator, at 32,654 to 33,265
_262p00290
PGA1_262p00300: PGA1_262p00300 - ABC transporter, extracellular solute-binding protein, at 33,414 to 35,000
_262p00300
Position (kb) 31
32
33 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 30.493 kb on + strand at 30.589 kb on + strand at 30.597 kb on - strand at 30.597 kb on - strand at 30.657 kb on + strand at 30.703 kb on + strand at 30.822 kb on + strand, within PGA1_262p00270 at 30.989 kb on + strand, within PGA1_262p00270 at 31.150 kb on - strand, within PGA1_262p00270 at 31.175 kb on - strand, within PGA1_262p00270 at 31.200 kb on + strand, within PGA1_262p00270 at 31.248 kb on - strand, within PGA1_262p00270 at 31.340 kb on + strand at 31.388 kb on + strand at 31.393 kb on + strand at 31.491 kb on + strand at 31.620 kb on + strand, within PGA1_262p00280 at 31.620 kb on + strand, within PGA1_262p00280 at 31.643 kb on - strand, within PGA1_262p00280 at 31.712 kb on + strand, within PGA1_262p00280 at 31.755 kb on - strand, within PGA1_262p00280 at 31.808 kb on - strand, within PGA1_262p00280 at 31.896 kb on + strand, within PGA1_262p00280 at 31.918 kb on + strand, within PGA1_262p00280 at 31.926 kb on - strand, within PGA1_262p00280 at 32.259 kb on - strand, within PGA1_262p00280 at 32.262 kb on + strand, within PGA1_262p00280 at 32.316 kb on + strand, within PGA1_262p00280 at 32.316 kb on + strand, within PGA1_262p00280 at 32.325 kb on - strand, within PGA1_262p00280 at 32.355 kb on - strand at 32.396 kb on + strand at 32.460 kb on + strand at 32.613 kb on - strand at 32.623 kb on - strand at 32.623 kb on - strand at 32.623 kb on - strand at 32.667 kb on - strand at 32.712 kb on + strand at 32.712 kb on + strand at 32.720 kb on + strand, within PGA1_262p00290 at 32.720 kb on - strand, within PGA1_262p00290 at 32.720 kb on - strand, within PGA1_262p00290 at 32.780 kb on + strand, within PGA1_262p00290 at 33.016 kb on + strand, within PGA1_262p00290 at 33.016 kb on + strand, within PGA1_262p00290 at 33.016 kb on + strand, within PGA1_262p00290 at 33.016 kb on + strand, within PGA1_262p00290 at 33.049 kb on - strand, within PGA1_262p00290 at 33.122 kb on - strand, within PGA1_262p00290 at 33.151 kb on + strand, within PGA1_262p00290 at 33.159 kb on - strand, within PGA1_262p00290 at 33.159 kb on - strand, within PGA1_262p00290 at 33.172 kb on - strand, within PGA1_262p00290 at 33.174 kb on + strand, within PGA1_262p00290 at 33.174 kb on + strand, within PGA1_262p00290 at 33.237 kb on - strand at 33.259 kb on + strand at 33.278 kb on + strand at 33.286 kb on - strand at 33.305 kb on + strand at 33.399 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH 6 remove 30,493 + -0.4 30,589 + -0.8 30,597 - -0.7 30,597 - -0.4 30,657 + -2.0 30,703 + +1.2 30,822 + PGA1_262p00270 0.23 -0.2 30,989 + PGA1_262p00270 0.48 +0.6 31,150 - PGA1_262p00270 0.72 -0.6 31,175 - PGA1_262p00270 0.76 +0.4 31,200 + PGA1_262p00270 0.80 -0.1 31,248 - PGA1_262p00270 0.87 -0.3 31,340 + -0.9 31,388 + -1.7 31,393 + +0.7 31,491 + +1.0 31,620 + PGA1_262p00280 0.19 -0.8 31,620 + PGA1_262p00280 0.19 -2.0 31,643 - PGA1_262p00280 0.21 +2.8 31,712 + PGA1_262p00280 0.28 -1.1 31,755 - PGA1_262p00280 0.32 -0.2 31,808 - PGA1_262p00280 0.37 +0.8 31,896 + PGA1_262p00280 0.46 -0.8 31,918 + PGA1_262p00280 0.48 -0.3 31,926 - PGA1_262p00280 0.49 +0.4 32,259 - PGA1_262p00280 0.81 -0.3 32,262 + PGA1_262p00280 0.81 +1.0 32,316 + PGA1_262p00280 0.87 -2.5 32,316 + PGA1_262p00280 0.87 -1.9 32,325 - PGA1_262p00280 0.87 -1.6 32,355 - -1.6 32,396 + -1.2 32,460 + +0.7 32,613 - +0.4 32,623 - -1.9 32,623 - +0.2 32,623 - +0.2 32,667 - +0.5 32,712 + +0.5 32,712 + +0.7 32,720 + PGA1_262p00290 0.11 -0.8 32,720 - PGA1_262p00290 0.11 +0.2 32,720 - PGA1_262p00290 0.11 -3.0 32,780 + PGA1_262p00290 0.21 -1.9 33,016 + PGA1_262p00290 0.59 -0.3 33,016 + PGA1_262p00290 0.59 -0.2 33,016 + PGA1_262p00290 0.59 +0.4 33,016 + PGA1_262p00290 0.59 -0.3 33,049 - PGA1_262p00290 0.65 -1.2 33,122 - PGA1_262p00290 0.76 +0.1 33,151 + PGA1_262p00290 0.81 -0.0 33,159 - PGA1_262p00290 0.83 -0.7 33,159 - PGA1_262p00290 0.83 +1.3 33,172 - PGA1_262p00290 0.85 -2.3 33,174 + PGA1_262p00290 0.85 -0.1 33,174 + PGA1_262p00290 0.85 +1.5 33,237 - -0.0 33,259 + -0.6 33,278 + +1.2 33,286 - -2.2 33,305 + +0.1 33,399 + -0.6
Or see this region's nucleotide sequence