Experiment: marine broth pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00090 and PGA1_262p00100 are separated by 142 nucleotides PGA1_262p00100 and PGA1_262p00110 are separated by 4 nucleotides PGA1_262p00110 and PGA1_262p00120 are separated by 3 nucleotides
PGA1_262p00090: PGA1_262p00090 - putative exopolysaccharide biosynthesis transport protein, at 10,062 to 12,173
_262p00090
PGA1_262p00100: PGA1_262p00100 - putative glycosyl transferase, at 12,316 to 13,404
_262p00100
PGA1_262p00110: PGA1_262p00110 - putative glycosyl transferase, at 13,409 to 14,362
_262p00110
PGA1_262p00120: PGA1_262p00120 - succinoglycan biosynthesis protein ExoL, at 14,366 to 15,547
_262p00120
Position (kb) 12
13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 11.352 kb on - strand, within PGA1_262p00090 at 11.580 kb on - strand, within PGA1_262p00090 at 11.610 kb on + strand, within PGA1_262p00090 at 11.646 kb on + strand, within PGA1_262p00090 at 11.654 kb on - strand, within PGA1_262p00090 at 11.843 kb on + strand, within PGA1_262p00090 at 11.875 kb on - strand, within PGA1_262p00090 at 11.877 kb on + strand, within PGA1_262p00090 at 12.103 kb on - strand at 12.157 kb on - strand at 12.179 kb on + strand at 12.187 kb on - strand at 12.296 kb on - strand at 12.554 kb on + strand, within PGA1_262p00100 at 12.644 kb on + strand, within PGA1_262p00100 at 12.644 kb on + strand, within PGA1_262p00100 at 12.853 kb on + strand, within PGA1_262p00100 at 12.860 kb on - strand, within PGA1_262p00100 at 12.942 kb on + strand, within PGA1_262p00100 at 13.045 kb on + strand, within PGA1_262p00100 at 13.052 kb on + strand, within PGA1_262p00100 at 13.200 kb on + strand, within PGA1_262p00100 at 13.200 kb on + strand, within PGA1_262p00100 at 13.208 kb on - strand, within PGA1_262p00100 at 13.220 kb on - strand, within PGA1_262p00100 at 13.280 kb on + strand, within PGA1_262p00100 at 13.280 kb on + strand, within PGA1_262p00100 at 13.285 kb on + strand, within PGA1_262p00100 at 13.293 kb on - strand, within PGA1_262p00100 at 13.314 kb on - strand at 13.314 kb on - strand at 13.548 kb on + strand, within PGA1_262p00110 at 13.600 kb on - strand, within PGA1_262p00110 at 13.750 kb on - strand, within PGA1_262p00110 at 13.750 kb on - strand, within PGA1_262p00110 at 13.796 kb on - strand, within PGA1_262p00110 at 13.825 kb on - strand, within PGA1_262p00110 at 13.844 kb on + strand, within PGA1_262p00110 at 13.854 kb on + strand, within PGA1_262p00110 at 13.854 kb on + strand, within PGA1_262p00110 at 13.854 kb on + strand, within PGA1_262p00110 at 13.864 kb on + strand, within PGA1_262p00110 at 13.889 kb on + strand, within PGA1_262p00110 at 13.935 kb on - strand, within PGA1_262p00110 at 13.985 kb on + strand, within PGA1_262p00110 at 14.039 kb on - strand, within PGA1_262p00110 at 14.039 kb on - strand, within PGA1_262p00110 at 14.039 kb on - strand, within PGA1_262p00110 at 14.039 kb on - strand, within PGA1_262p00110 at 14.111 kb on + strand, within PGA1_262p00110 at 14.111 kb on + strand, within PGA1_262p00110 at 14.119 kb on - strand, within PGA1_262p00110 at 14.273 kb on - strand at 14.286 kb on + strand at 14.356 kb on + strand at 14.396 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH 6 remove 11,352 - PGA1_262p00090 0.61 -2.3 11,580 - PGA1_262p00090 0.72 +1.2 11,610 + PGA1_262p00090 0.73 -0.8 11,646 + PGA1_262p00090 0.75 -0.9 11,654 - PGA1_262p00090 0.75 +0.7 11,843 + PGA1_262p00090 0.84 +0.0 11,875 - PGA1_262p00090 0.86 +0.8 11,877 + PGA1_262p00090 0.86 +0.1 12,103 - +0.4 12,157 - -3.3 12,179 + -0.2 12,187 - +0.3 12,296 - +0.5 12,554 + PGA1_262p00100 0.22 +1.9 12,644 + PGA1_262p00100 0.30 +0.3 12,644 + PGA1_262p00100 0.30 -1.2 12,853 + PGA1_262p00100 0.49 -0.7 12,860 - PGA1_262p00100 0.50 +0.8 12,942 + PGA1_262p00100 0.57 -0.3 13,045 + PGA1_262p00100 0.67 +0.1 13,052 + PGA1_262p00100 0.68 +0.5 13,200 + PGA1_262p00100 0.81 +1.8 13,200 + PGA1_262p00100 0.81 +1.9 13,208 - PGA1_262p00100 0.82 +1.3 13,220 - PGA1_262p00100 0.83 +0.1 13,280 + PGA1_262p00100 0.89 +0.5 13,280 + PGA1_262p00100 0.89 +0.8 13,285 + PGA1_262p00100 0.89 +1.0 13,293 - PGA1_262p00100 0.90 +0.3 13,314 - -0.5 13,314 - +2.6 13,548 + PGA1_262p00110 0.15 +0.5 13,600 - PGA1_262p00110 0.20 +0.9 13,750 - PGA1_262p00110 0.36 +1.1 13,750 - PGA1_262p00110 0.36 -2.8 13,796 - PGA1_262p00110 0.41 +0.0 13,825 - PGA1_262p00110 0.44 +1.5 13,844 + PGA1_262p00110 0.46 -1.0 13,854 + PGA1_262p00110 0.47 -0.5 13,854 + PGA1_262p00110 0.47 -2.0 13,854 + PGA1_262p00110 0.47 -1.3 13,864 + PGA1_262p00110 0.48 +0.9 13,889 + PGA1_262p00110 0.50 -1.9 13,935 - PGA1_262p00110 0.55 +0.6 13,985 + PGA1_262p00110 0.60 +1.2 14,039 - PGA1_262p00110 0.66 +0.3 14,039 - PGA1_262p00110 0.66 +1.6 14,039 - PGA1_262p00110 0.66 -0.6 14,039 - PGA1_262p00110 0.66 +0.5 14,111 + PGA1_262p00110 0.74 -1.3 14,111 + PGA1_262p00110 0.74 -0.7 14,119 - PGA1_262p00110 0.74 -0.1 14,273 - +0.9 14,286 + +0.1 14,356 + +1.2 14,396 - -0.9
Or see this region's nucleotide sequence