Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c34970

Experiment: marine broth pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth pH 6
3,667,340	-		PGA1_c34960	0.23	-0.3
3,667,394	+		PGA1_c34960	0.29	-1.0
3,667,394	+		PGA1_c34960	0.29	+0.9
3,667,462	-		PGA1_c34960	0.37	-1.1
3,667,470	-		PGA1_c34960	0.37	-2.5
3,667,518	+		PGA1_c34960	0.43	+0.2
3,667,531	-		PGA1_c34960	0.44	+1.0
3,667,560	-		PGA1_c34960	0.47	-0.6
3,667,568	-		PGA1_c34960	0.48	-1.7
3,667,568	-		PGA1_c34960	0.48	-2.0
3,667,609	-		PGA1_c34960	0.53	+1.3
3,667,786	-		PGA1_c34960	0.72	-0.3
3,667,824	+		PGA1_c34960	0.76	+1.3
3,667,824	+		PGA1_c34960	0.76	+1.2
3,667,838	+		PGA1_c34960	0.78	-0.7
3,667,846	-		PGA1_c34960	0.79	-3.2
3,667,873	-		PGA1_c34960	0.82	+0.3
3,667,877	-		PGA1_c34960	0.82	+0.2
3,667,893	-		PGA1_c34960	0.84	-0.3
3,667,899	+		PGA1_c34960	0.85	-1.0
3,667,899	+		PGA1_c34960	0.85	-0.6
3,667,905	-		PGA1_c34960	0.85	+0.2
3,667,922	+		PGA1_c34960	0.87	-0.5
3,667,929	+		PGA1_c34960	0.88	+1.1
3,667,934	+		PGA1_c34960	0.88	+0.8
3,667,984	-				+0.2
3,667,994	+				-0.4
3,668,036	+				-1.0
3,668,055	-				+1.4
3,668,076	-				-2.6
3,668,110	-				-0.1
3,668,153	+				-1.6
3,668,153	+				+2.6
3,668,161	-				-3.0
3,668,161	-				+1.4
3,668,233	-				+0.6
3,668,255	+		PGA1_c34970	0.11	+0.8
3,668,255	+		PGA1_c34970	0.11	+0.6
3,668,255	+		PGA1_c34970	0.11	+0.3
3,668,267	+		PGA1_c34970	0.13	+1.9
3,668,282	+		PGA1_c34970	0.15	+0.7
3,668,282	+		PGA1_c34970	0.15	+0.1
3,668,370	-		PGA1_c34970	0.28	+0.1
3,668,380	-		PGA1_c34970	0.30	-0.3
3,668,394	+		PGA1_c34970	0.32	+2.7
3,668,394	+		PGA1_c34970	0.32	+0.1
3,668,402	-		PGA1_c34970	0.33	-1.1
3,668,402	-		PGA1_c34970	0.33	+2.4
3,668,402	-		PGA1_c34970	0.33	+0.9
3,668,412	-		PGA1_c34970	0.34	+1.8
3,668,412	-		PGA1_c34970	0.34	+1.3
3,668,412	-		PGA1_c34970	0.34	+0.0
3,668,456	-		PGA1_c34970	0.41	+1.3
3,668,456	-		PGA1_c34970	0.41	-0.8
3,668,467	-		PGA1_c34970	0.43	+1.6
3,668,550	+		PGA1_c34970	0.55	+0.7
3,668,582	+		PGA1_c34970	0.60	-0.7
3,668,582	+		PGA1_c34970	0.60	-0.6
3,668,582	+		PGA1_c34970	0.60	+0.1
3,668,590	-		PGA1_c34970	0.61	+0.5
3,668,633	+		PGA1_c34970	0.68	+1.5
3,668,641	-		PGA1_c34970	0.69	-1.3
3,668,703	+		PGA1_c34970	0.78	-2.6
3,668,703	+		PGA1_c34970	0.78	+0.4
3,668,711	-		PGA1_c34970	0.79	+1.4
3,668,809	+				+1.5
3,668,828	-				-2.7
3,668,854	+				-0.8
3,668,854	+				+1.6
3,668,854	+				+2.6
3,668,854	+				-0.1
3,668,862	-				+0.5
3,668,862	-				-0.7
3,668,862	-				-0.0
3,668,862	-				-1.2
3,668,862	-				+0.9
3,668,862	-				-0.2
3,668,862	-				-0.4
3,668,862	-				+0.6
3,668,862	-				+0.7
3,668,862	-				-1.8
3,668,862	-				+1.0
3,668,884	+				-1.7
3,668,884	+				+0.6
3,668,884	+				-0.6
3,668,884	+				-0.9
3,668,892	-				+0.6
3,668,892	-				-0.4
3,668,914	-				-0.1
3,668,976	-				+2.1
3,668,976	-				-1.5
3,668,976	-				+0.2
3,668,978	+				+0.7
3,668,978	+				-0.1
3,669,017	-		PGA1_c34980	0.10	+0.7
3,669,023	-		PGA1_c34980	0.11	-0.9
3,669,091	+		PGA1_c34980	0.19	+1.7
3,669,091	+		PGA1_c34980	0.19	+1.1
3,669,214	+		PGA1_c34980	0.33	+0.8
3,669,247	+		PGA1_c34980	0.37	+0.7
3,669,252	+		PGA1_c34980	0.37	+0.3
3,669,260	-		PGA1_c34980	0.38	-1.5
3,669,260	-		PGA1_c34980	0.38	+1.3
3,669,295	-		PGA1_c34980	0.42	+0.0
3,669,304	-		PGA1_c34980	0.43	+1.4
3,669,372	+		PGA1_c34980	0.51	-0.7
3,669,469	-		PGA1_c34980	0.62	+1.4
3,669,477	-		PGA1_c34980	0.63	+0.1
3,669,505	-		PGA1_c34980	0.66	-1.0
3,669,609	-		PGA1_c34980	0.78	+1.6
3,669,668	-		PGA1_c34980	0.85	+0.9
3,669,668	-		PGA1_c34980	0.85	-0.7
3,669,715	+				+0.6
3,669,722	+				+0.1
3,669,722	+				+0.9
3,669,742	+				-2.9