Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c30520

Experiment: marine broth pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth pH 6
3,186,002	+		PGA1_c30500	0.29	-0.4
3,186,002	+		PGA1_c30500	0.29	-2.3
3,186,002	+		PGA1_c30500	0.29	+0.1
3,186,002	+		PGA1_c30500	0.29	-0.1
3,186,002	+		PGA1_c30500	0.29	+2.0
3,186,007	+		PGA1_c30500	0.30	+1.7
3,186,007	+		PGA1_c30500	0.30	+0.6
3,186,007	+		PGA1_c30500	0.30	-0.1
3,186,007	+		PGA1_c30500	0.30	-0.6
3,186,010	-		PGA1_c30500	0.30	+1.4
3,186,010	-		PGA1_c30500	0.30	+1.4
3,186,010	-		PGA1_c30500	0.30	-2.1
3,186,010	-		PGA1_c30500	0.30	-0.6
3,186,010	-		PGA1_c30500	0.30	-1.3
3,186,026	+		PGA1_c30500	0.33	+1.0
3,186,145	-		PGA1_c30500	0.52	+0.9
3,186,153	-		PGA1_c30500	0.54	-1.3
3,186,153	-		PGA1_c30500	0.54	+0.2
3,186,167	-		PGA1_c30500	0.56	+0.2
3,186,182	-		PGA1_c30500	0.59	-0.0
3,186,193	+		PGA1_c30500	0.60	+2.1
3,186,261	-		PGA1_c30500	0.72	-1.3
3,186,282	+		PGA1_c30500	0.75	+1.5
3,186,287	+		PGA1_c30500	0.76	+1.2
3,186,290	-		PGA1_c30500	0.76	+0.5
3,186,290	-		PGA1_c30500	0.76	-0.3
3,186,295	-		PGA1_c30500	0.77	-0.0
3,186,328	-		PGA1_c30500	0.83	+0.9
3,186,336	+		PGA1_c30500	0.84	-1.8
3,186,345	+		PGA1_c30500	0.85	-0.9
3,186,346	+		PGA1_c30500	0.86	-1.7
3,186,387	+				+1.2
3,186,390	-				+0.9
3,186,390	-				-0.5
3,186,406	+				-3.1
3,186,414	-				-1.3
3,186,417	+				-1.0
3,186,422	-				-2.3
3,186,498	+				-2.1
3,186,505	-				-0.8
3,186,524	-				-1.9
3,186,558	+		PGA1_c30510	0.16	-0.3
3,186,576	+		PGA1_c30510	0.20	-1.0
3,186,584	-		PGA1_c30510	0.22	-1.7
3,186,584	-		PGA1_c30510	0.22	+1.6
3,186,584	-		PGA1_c30510	0.22	-1.9
3,186,599	+		PGA1_c30510	0.25	-1.8
3,186,599	-		PGA1_c30510	0.25	+2.5
3,186,602	-		PGA1_c30510	0.26	+1.3
3,186,607	-		PGA1_c30510	0.27	+0.7
3,186,678	+		PGA1_c30510	0.43	-2.1
3,186,678	+		PGA1_c30510	0.43	+0.7
3,186,712	+		PGA1_c30510	0.50	-1.9
3,186,748	+		PGA1_c30510	0.58	+0.3
3,186,756	-		PGA1_c30510	0.60	+0.7
3,186,763	+		PGA1_c30510	0.62	+0.7
3,186,843	+		PGA1_c30510	0.79	-0.2
3,186,861	+		PGA1_c30510	0.83	-0.8
3,186,905	+				-0.4
3,186,917	+				-1.3
3,186,999	-				+0.4
3,187,022	-				+0.2
3,187,022	-				+0.7
3,187,048	-				+0.7
3,187,049	-				-0.4
3,187,054	-		PGA1_c30520	0.11	+0.2
3,187,066	-		PGA1_c30520	0.12	-1.6
3,187,078	-		PGA1_c30520	0.14	-1.1
3,187,090	+		PGA1_c30520	0.16	-1.3
3,187,167	+		PGA1_c30520	0.29	+0.5
3,187,182	+		PGA1_c30520	0.31	+0.3
3,187,182	+		PGA1_c30520	0.31	-0.2
3,187,182	+		PGA1_c30520	0.31	+0.1
3,187,182	+		PGA1_c30520	0.31	-1.7
3,187,182	+		PGA1_c30520	0.31	-0.5
3,187,190	-		PGA1_c30520	0.33	+0.5
3,187,190	-		PGA1_c30520	0.33	+1.3
3,187,190	-		PGA1_c30520	0.33	+1.9
3,187,190	-		PGA1_c30520	0.33	-0.1
3,187,190	-		PGA1_c30520	0.33	-0.3
3,187,190	-		PGA1_c30520	0.33	-1.7
3,187,190	-		PGA1_c30520	0.33	-1.6
3,187,201	+		PGA1_c30520	0.34	+0.2
3,187,209	-		PGA1_c30520	0.36	+0.3
3,187,210	-		PGA1_c30520	0.36	-0.1
3,187,224	+		PGA1_c30520	0.38	+0.2
3,187,230	-		PGA1_c30520	0.39	+0.1
3,187,266	-		PGA1_c30520	0.45	+1.5
3,187,266	-		PGA1_c30520	0.45	-0.5
3,187,266	-		PGA1_c30520	0.45	+0.3
3,187,310	+		PGA1_c30520	0.52	-0.8
3,187,310	+		PGA1_c30520	0.52	+0.4
3,187,318	-		PGA1_c30520	0.53	-0.2
3,187,339	+		PGA1_c30520	0.57	-0.9
3,187,347	-		PGA1_c30520	0.58	-0.6
3,187,356	+		PGA1_c30520	0.59	-0.4
3,187,363	+		PGA1_c30520	0.61	-0.0
3,187,369	+		PGA1_c30520	0.61	-1.9
3,187,369	+		PGA1_c30520	0.61	+0.5
3,187,369	+		PGA1_c30520	0.61	-0.2
3,187,369	+		PGA1_c30520	0.61	+0.5
3,187,370	-		PGA1_c30520	0.62	+1.3
3,187,377	-		PGA1_c30520	0.63	+0.4
3,187,398	+		PGA1_c30520	0.66	-0.6
3,187,398	+		PGA1_c30520	0.66	+1.2
3,187,399	+		PGA1_c30520	0.66	-0.9
3,187,438	-		PGA1_c30520	0.73	-0.3
3,187,449	-		PGA1_c30520	0.74	+1.1
3,187,475	+		PGA1_c30520	0.79	+0.9
3,187,480	+		PGA1_c30520	0.79	-1.0
3,187,483	-		PGA1_c30520	0.80	-0.2
3,187,493	-		PGA1_c30520	0.82	-0.4
3,187,554	-				+0.6
3,187,623	+				-0.7
3,187,645	+				-0.3
3,187,660	+				+0.4
3,187,689	-				-0.9
3,187,731	+		PGA1_c30530	0.14	-0.5
3,187,739	-		PGA1_c30530	0.15	-0.7
3,187,739	-		PGA1_c30530	0.15	+0.7
3,187,777	+		PGA1_c30530	0.20	-0.7
3,187,778	+		PGA1_c30530	0.20	+0.3
3,187,792	-		PGA1_c30530	0.22	-1.5
3,187,800	-		PGA1_c30530	0.23	-1.8
3,187,822	+		PGA1_c30530	0.25	+1.3
3,187,822	+		PGA1_c30530	0.25	-0.5
3,187,822	+		PGA1_c30530	0.25	-0.6
3,187,823	-		PGA1_c30530	0.25	+0.5
3,187,830	+		PGA1_c30530	0.26	-3.2
3,187,830	+		PGA1_c30530	0.26	-0.4
3,187,838	-		PGA1_c30530	0.27	-0.2
3,187,838	-		PGA1_c30530	0.27	-1.1
3,187,856	-		PGA1_c30530	0.29	+0.8
3,187,858	+		PGA1_c30530	0.30	-1.1
3,187,882	+		PGA1_c30530	0.32	+0.7
3,187,900	+		PGA1_c30530	0.35	-0.1
3,187,900	+		PGA1_c30530	0.35	+0.5
3,187,908	-		PGA1_c30530	0.36	-0.1
3,187,937	+		PGA1_c30530	0.39	-0.8
3,187,993	+		PGA1_c30530	0.46	-3.1
3,188,050	-		PGA1_c30530	0.53	+1.8
3,188,061	+		PGA1_c30530	0.54	+0.4
3,188,066	+		PGA1_c30530	0.54	+0.6
3,188,072	+		PGA1_c30530	0.55	-0.5
3,188,090	-		PGA1_c30530	0.57	+0.7
3,188,095	+		PGA1_c30530	0.58	-0.5
3,188,098	-		PGA1_c30530	0.58	-0.7
3,188,103	-		PGA1_c30530	0.59	-0.4
3,188,103	-		PGA1_c30530	0.59	+0.2
3,188,171	-		PGA1_c30530	0.67	-2.3
3,188,221	+		PGA1_c30530	0.73	+0.2
3,188,239	+		PGA1_c30530	0.75	-1.2
3,188,243	-		PGA1_c30530	0.76	+0.6
3,188,250	+		PGA1_c30530	0.76	+0.8
3,188,263	-		PGA1_c30530	0.78	+0.6
3,188,294	+		PGA1_c30530	0.82	+1.8
3,188,342	-		PGA1_c30530	0.87	-1.1
3,188,431	+				+1.2
3,188,431	+				+1.6
3,188,439	-				+3.1
3,188,439	-				+0.5
3,188,439	-				+0.1
3,188,460	+				-0.2
3,188,460	+				+3.4
3,188,460	+				-1.0
3,188,468	-				+2.2
3,188,468	-				-0.4
3,188,484	+				+0.4
3,188,563	-				+1.1