Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c28110

Experiment: marine broth pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth pH 6
2,933,815	-		PGA1_c28100	0.31	+0.7
2,933,918	+		PGA1_c28100	0.38	-3.1
2,933,918	+		PGA1_c28100	0.38	-1.8
2,933,936	-		PGA1_c28100	0.39	+0.7
2,933,980	+		PGA1_c28100	0.42	-1.8
2,934,026	+		PGA1_c28100	0.45	-0.1
2,934,034	-		PGA1_c28100	0.46	+1.1
2,934,127	-		PGA1_c28100	0.52	+0.6
2,934,156	-		PGA1_c28100	0.54	-2.0
2,934,370	+		PGA1_c28100	0.69	-1.3
2,934,405	-		PGA1_c28100	0.72	+1.4
2,934,431	-		PGA1_c28100	0.73	-1.7
2,934,464	-		PGA1_c28100	0.76	-0.3
2,934,530	-		PGA1_c28100	0.80	-1.0
2,934,722	-				+0.1
2,934,727	+				-0.6
2,934,837	-				+0.7
2,934,844	-				+2.7
2,934,873	-				+0.0
2,934,886	-				-2.1
2,934,934	+				-1.4
2,935,082	+		PGA1_c28110	0.11	-2.7
2,935,084	+		PGA1_c28110	0.11	-0.2
2,935,172	-		PGA1_c28110	0.15	+2.2
2,935,238	+		PGA1_c28110	0.18	-0.3
2,935,246	-		PGA1_c28110	0.18	+0.7
2,935,259	-		PGA1_c28110	0.18	-0.8
2,935,279	-		PGA1_c28110	0.19	+0.4
2,935,283	-		PGA1_c28110	0.19	-0.2
2,935,355	+		PGA1_c28110	0.22	+1.3
2,935,395	+		PGA1_c28110	0.24	-0.6
2,935,397	+		PGA1_c28110	0.24	-3.3
2,935,564	+		PGA1_c28110	0.31	+0.7
2,935,646	-		PGA1_c28110	0.35	-1.9
2,935,659	-		PGA1_c28110	0.35	-0.2
2,935,714	+		PGA1_c28110	0.37	-3.3
2,935,750	+		PGA1_c28110	0.39	-0.3
2,935,870	-		PGA1_c28110	0.44	-0.6
2,936,024	+		PGA1_c28110	0.50	-0.6
2,936,054	-		PGA1_c28110	0.52	+0.5
2,936,073	+		PGA1_c28110	0.52	+2.3
2,936,101	-		PGA1_c28110	0.53	-1.5
2,936,154	-		PGA1_c28110	0.56	-0.4
2,936,156	-		PGA1_c28110	0.56	+0.0
2,936,222	-		PGA1_c28110	0.59	-0.2
2,936,233	-		PGA1_c28110	0.59	-0.1
2,936,258	+		PGA1_c28110	0.60	-3.9
2,936,334	+		PGA1_c28110	0.63	+0.2
2,936,367	-		PGA1_c28110	0.65	+1.1
2,936,414	+		PGA1_c28110	0.67	-0.7
2,936,571	+		PGA1_c28110	0.73	-2.1
2,936,578	+		PGA1_c28110	0.73	+0.0
2,936,579	-		PGA1_c28110	0.73	+0.7
2,936,586	+		PGA1_c28110	0.74	-0.1
2,936,623	-		PGA1_c28110	0.75	-0.0
2,936,623	-		PGA1_c28110	0.75	-2.1
2,936,635	-		PGA1_c28110	0.76	-2.7
2,936,727	-		PGA1_c28110	0.80	-1.5
2,936,732	-		PGA1_c28110	0.80	-1.0
2,936,882	-		PGA1_c28110	0.86	+0.5
2,936,885	+		PGA1_c28110	0.86	-1.0
2,936,897	+		PGA1_c28110	0.87	-2.4
2,936,915	-		PGA1_c28110	0.87	-1.3
2,936,915	-		PGA1_c28110	0.87	+0.5
2,936,915	-		PGA1_c28110	0.87	-1.5
2,936,933	-		PGA1_c28110	0.88	-1.7
2,936,954	+		PGA1_c28110	0.89	-3.2
2,936,954	+		PGA1_c28110	0.89	-0.1
2,936,962	-		PGA1_c28110	0.89	-2.1
2,936,970	-		PGA1_c28110	0.90	+0.1
2,936,987	+				-3.0
2,936,987	+				-0.3
2,936,987	+				+0.4
2,937,011	+				-2.5
2,937,124	+				-1.6
2,937,178	-				-1.2
2,937,180	+				+0.4
2,937,188	-				-0.8
2,937,216	-				+0.2
2,937,235	-				-0.6
2,937,316	+				+0.1
2,937,387	-		PGA1_c28120	0.17	+1.1
2,937,425	-		PGA1_c28120	0.21	-1.3
2,937,537	+		PGA1_c28120	0.33	-0.3
2,937,669	+		PGA1_c28120	0.47	+0.0
2,937,677	-		PGA1_c28120	0.48	+0.7
2,937,679	+		PGA1_c28120	0.48	+1.5
2,937,684	-		PGA1_c28120	0.48	+2.1
2,937,806	+		PGA1_c28120	0.61	+0.0
2,937,928	-		PGA1_c28120	0.74	+0.6
2,937,953	+		PGA1_c28120	0.77	-4.0
2,937,970	-		PGA1_c28120	0.79	-0.3
2,938,158	+				-1.3
2,938,158	+				+1.2
2,938,166	-				+1.3
2,938,182	+				-0.7
2,938,208	+				-0.5
2,938,208	+				+1.3
2,938,216	-				+0.4
2,938,216	-				+1.2
2,938,216	-				+2.1