Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c26130

Experiment: marine broth pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth pH 6
2,717,557	-		PGA1_c26120	0.52	-1.7
2,717,557	-		PGA1_c26120	0.52	+1.7
2,717,646	-		PGA1_c26120	0.57	-0.1
2,717,660	+		PGA1_c26120	0.58	+2.7
2,717,663	-		PGA1_c26120	0.58	+0.7
2,717,747	-		PGA1_c26120	0.64	+0.8
2,717,855	+		PGA1_c26120	0.71	+0.4
2,717,866	+		PGA1_c26120	0.72	+0.4
2,717,875	+		PGA1_c26120	0.72	-0.5
2,717,883	-		PGA1_c26120	0.73	+0.5
2,717,902	-		PGA1_c26120	0.74	-0.1
2,717,909	+		PGA1_c26120	0.74	-0.3
2,717,932	-		PGA1_c26120	0.76	-0.5
2,717,972	-		PGA1_c26120	0.78	-0.4
2,718,005	-		PGA1_c26120	0.81	-0.3
2,718,175	+				-0.2
2,718,175	+				+1.4
2,718,215	+				+1.0
2,718,251	+				-2.4
2,718,264	-				-0.3
2,718,309	+				-0.5
2,718,380	+				-1.7
2,718,388	-				-1.1
2,718,412	+				-1.6
2,718,420	-				-0.5
2,718,540	-				+2.0
2,718,540	-				-0.1
2,718,627	+		PGA1_c26130	0.26	-1.1
2,718,637	+		PGA1_c26130	0.29	-1.4
2,718,637	+		PGA1_c26130	0.29	+0.2
2,718,645	-		PGA1_c26130	0.31	+0.1
2,718,645	-		PGA1_c26130	0.31	-0.9
2,718,672	+		PGA1_c26130	0.38	-0.6
2,718,695	+		PGA1_c26130	0.43	+0.1
2,718,695	+		PGA1_c26130	0.43	-0.7
2,718,700	+		PGA1_c26130	0.45	-0.0
2,718,708	-		PGA1_c26130	0.47	+0.5
2,718,708	-		PGA1_c26130	0.47	+0.6
2,718,728	+		PGA1_c26130	0.52	-1.9
2,718,736	-		PGA1_c26130	0.54	-0.2
2,718,762	+		PGA1_c26130	0.60	+1.7
2,718,781	+		PGA1_c26130	0.65	-0.4
2,718,811	+		PGA1_c26130	0.72	+0.4
2,718,814	-		PGA1_c26130	0.73	-0.9
2,718,819	-		PGA1_c26130	0.74	-1.8
2,718,860	-		PGA1_c26130	0.85	-0.2
2,718,921	+				+0.0
2,718,924	-				-0.9
2,718,947	+				+1.7
2,718,951	-				+1.3
2,719,010	-				-0.2
2,719,033	+				+1.0
2,719,041	-				+0.1
2,719,043	+				+1.0
2,719,044	+				+0.3
2,719,044	+				-1.0
2,719,052	-				-1.4
2,719,052	-				-0.4
2,719,052	-				-1.0
2,719,052	-				+0.3
2,719,052	-				+0.1
2,719,052	-				-0.1
2,719,052	-				-0.9
2,719,052	-				+0.6
2,719,052	-				+1.7
2,719,077	+				+0.8
2,719,085	-				-1.1
2,719,129	-				+0.7
2,719,153	-				+0.7
2,719,153	-				+0.9
2,719,187	+				-2.3
2,719,237	-				+0.7
2,719,302	-				-0.3
2,719,364	-		PGA1_c26140	0.11	-2.1
2,719,367	-		PGA1_c26140	0.11	+0.9
2,719,377	-		PGA1_c26140	0.11	-1.1
2,719,377	-		PGA1_c26140	0.11	-0.3
2,719,399	-		PGA1_c26140	0.12	-1.4
2,719,399	-		PGA1_c26140	0.12	+0.4
2,719,406	+		PGA1_c26140	0.12	+1.3
2,719,423	-		PGA1_c26140	0.13	+0.5
2,719,456	+		PGA1_c26140	0.14	+0.7
2,719,464	-		PGA1_c26140	0.14	+1.1
2,719,501	-		PGA1_c26140	0.15	-1.5
2,719,501	-		PGA1_c26140	0.15	-2.8
2,719,659	-		PGA1_c26140	0.20	-1.4
2,719,672	-		PGA1_c26140	0.20	+1.3
2,719,672	-		PGA1_c26140	0.20	+1.0
2,719,796	+		PGA1_c26140	0.24	+2.2