Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c24980

Experiment: marine broth pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth pH 6
2,602,327	+				+1.5
2,602,333	-				+0.9
2,602,334	-				-0.8
2,602,335	-				+1.3
2,602,361	+				-1.1
2,602,388	+		PGA1_c24970	0.12	-1.0
2,602,401	-		PGA1_c24970	0.14	-3.0
2,602,402	-		PGA1_c24970	0.14	+0.4
2,602,413	+		PGA1_c24970	0.15	-1.0
2,602,421	-		PGA1_c24970	0.16	-1.2
2,602,521	+		PGA1_c24970	0.27	+1.4
2,602,566	+		PGA1_c24970	0.32	-0.4
2,602,691	+		PGA1_c24970	0.46	-3.0
2,602,693	-		PGA1_c24970	0.46	+0.6
2,602,726	+		PGA1_c24970	0.50	-1.7
2,602,783	-		PGA1_c24970	0.56	+2.2
2,602,790	+		PGA1_c24970	0.57	-0.6
2,602,798	-		PGA1_c24970	0.58	-1.1
2,602,798	-		PGA1_c24970	0.58	+0.0
2,602,808	+		PGA1_c24970	0.59	-1.2
2,602,808	-		PGA1_c24970	0.59	+0.7
2,602,890	-		PGA1_c24970	0.68	-1.0
2,602,953	+		PGA1_c24970	0.76	-0.2
2,602,966	-		PGA1_c24970	0.77	+1.1
2,602,966	-		PGA1_c24970	0.77	+1.2
2,602,990	+		PGA1_c24970	0.80	-1.7
2,603,010	-		PGA1_c24970	0.82	+0.6
2,603,010	-		PGA1_c24970	0.82	+1.2
2,603,020	-		PGA1_c24970	0.83	+1.5
2,603,031	+		PGA1_c24970	0.84	-0.2
2,603,310	+				+1.3
2,603,310	+				+1.6
2,603,374	+		PGA1_c24980	0.13	+0.6
2,603,405	-		PGA1_c24980	0.20	+0.4
2,603,405	-		PGA1_c24980	0.20	+0.1
2,603,405	-		PGA1_c24980	0.20	+1.3
2,603,453	-		PGA1_c24980	0.31	+1.4
2,603,469	-		PGA1_c24980	0.35	+0.2
2,603,506	-		PGA1_c24980	0.43	+1.1
2,603,509	+		PGA1_c24980	0.44	+1.1
2,603,517	-		PGA1_c24980	0.45	-0.8
2,603,632	+		PGA1_c24980	0.71	+0.8
2,603,634	-		PGA1_c24980	0.72	+0.2
2,603,718	-				+0.2
2,603,766	-				-1.2
2,603,783	+				+0.1
2,603,826	+				+0.6
2,603,829	+				+1.0
2,604,738	+				-0.1
2,604,746	-				-0.3