Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c22310

Experiment: marine broth pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth pH 6
2,314,099	-		PGA1_c22290	0.20	+1.3
2,314,167	+		PGA1_c22290	0.29	-1.1
2,314,194	-		PGA1_c22290	0.33	-0.0
2,314,195	+		PGA1_c22290	0.33	-0.2
2,314,225	+		PGA1_c22290	0.37	+0.1
2,314,233	-		PGA1_c22290	0.38	-0.0
2,314,239	-		PGA1_c22290	0.39	-0.7
2,314,254	-		PGA1_c22290	0.41	+0.6
2,314,260	+		PGA1_c22290	0.42	+0.1
2,314,268	-		PGA1_c22290	0.43	+0.5
2,314,268	-		PGA1_c22290	0.43	-0.3
2,314,268	-		PGA1_c22290	0.43	-0.7
2,314,268	-		PGA1_c22290	0.43	-0.8
2,314,273	+		PGA1_c22290	0.44	-3.0
2,314,294	-		PGA1_c22290	0.47	+0.6
2,314,309	+		PGA1_c22290	0.49	+0.8
2,314,316	-		PGA1_c22290	0.50	+0.9
2,314,317	-		PGA1_c22290	0.50	+1.5
2,314,331	+		PGA1_c22290	0.52	+0.9
2,314,376	+		PGA1_c22290	0.58	+2.1
2,314,377	+		PGA1_c22290	0.58	+1.1
2,314,385	+		PGA1_c22290	0.59	+0.2
2,314,393	-		PGA1_c22290	0.60	+2.0
2,314,397	+		PGA1_c22290	0.61	+1.8
2,314,397	+		PGA1_c22290	0.61	-2.4
2,314,405	-		PGA1_c22290	0.62	+2.6
2,314,415	-		PGA1_c22290	0.63	-1.6
2,314,417	-		PGA1_c22290	0.63	+0.6
2,314,434	+		PGA1_c22290	0.66	+0.5
2,314,442	-		PGA1_c22290	0.67	+0.1
2,314,459	+		PGA1_c22290	0.69	-0.2
2,314,469	+		PGA1_c22290	0.71	+0.2
2,314,482	-		PGA1_c22290	0.72	-1.1
2,314,501	+		PGA1_c22290	0.75	+0.6
2,314,501	+		PGA1_c22290	0.75	+0.4
2,314,509	-		PGA1_c22290	0.76	-2.8
2,314,509	-		PGA1_c22290	0.76	+1.1
2,314,546	-		PGA1_c22290	0.81	+0.2
2,314,609	+				-2.3
2,314,632	+				+1.8
2,314,635	-				-0.0
2,314,695	+				-0.1
2,314,701	+				+1.1
2,314,731	-		PGA1_c22300	0.15	-0.7
2,314,767	+		PGA1_c22300	0.26	+0.4
2,314,767	+		PGA1_c22300	0.26	-0.7
2,314,795	-		PGA1_c22300	0.34	-0.3
2,314,810	-		PGA1_c22300	0.38	-1.0
2,314,958	+		PGA1_c22300	0.82	+1.9
2,314,958	+		PGA1_c22300	0.82	+0.9
2,314,958	+		PGA1_c22300	0.82	+0.1
2,314,958	+		PGA1_c22300	0.82	+0.6
2,314,958	+		PGA1_c22300	0.82	-0.0
2,314,958	+		PGA1_c22300	0.82	-0.2
2,314,958	+		PGA1_c22300	0.82	+0.4
2,314,966	-		PGA1_c22300	0.85	+0.2
2,314,966	-		PGA1_c22300	0.85	+1.2
2,314,966	-		PGA1_c22300	0.85	+1.1
2,314,966	-		PGA1_c22300	0.85	-2.9
2,314,966	-		PGA1_c22300	0.85	+1.0
2,314,966	-		PGA1_c22300	0.85	-0.4
2,314,991	+				-0.4
2,315,070	+		PGA1_c22310	0.10	-1.2
2,315,070	+		PGA1_c22310	0.10	-2.4
2,315,078	-		PGA1_c22310	0.12	-0.8
2,315,089	+		PGA1_c22310	0.15	-1.0
2,315,089	+		PGA1_c22310	0.15	-0.1
2,315,096	-		PGA1_c22310	0.16	-1.8
2,315,096	-		PGA1_c22310	0.16	-0.3
2,315,097	-		PGA1_c22310	0.17	+1.9
2,315,186	+		PGA1_c22310	0.38	+0.7
2,315,225	-		PGA1_c22310	0.47	-0.0
2,315,261	-		PGA1_c22310	0.55	-0.1
2,315,409	+				+0.3
2,315,416	-				+1.0
2,315,416	-				-0.6
2,315,461	+				-1.1
2,315,495	+				-2.8
2,315,507	+				-0.4
2,315,527	+				+0.5
2,315,527	+				+0.3
2,315,640	+		PGA1_c22320	0.22	-0.9
2,315,653	-		PGA1_c22320	0.23	-0.4
2,315,653	-		PGA1_c22320	0.23	+0.3
2,315,655	+		PGA1_c22320	0.23	+0.7
2,315,740	+		PGA1_c22320	0.33	-0.1
2,315,792	+		PGA1_c22320	0.39	+1.0
2,315,792	+		PGA1_c22320	0.39	+0.1
2,315,800	-		PGA1_c22320	0.40	-1.3
2,315,800	-		PGA1_c22320	0.40	+0.7
2,315,800	-		PGA1_c22320	0.40	+0.7
2,315,800	-		PGA1_c22320	0.40	+0.8
2,315,867	+		PGA1_c22320	0.47	+1.1
2,315,963	+		PGA1_c22320	0.58	-0.3
2,315,997	+		PGA1_c22320	0.62	+0.2
2,315,997	+		PGA1_c22320	0.62	-2.4
2,315,997	+		PGA1_c22320	0.62	+0.1
2,315,997	+		PGA1_c22320	0.62	-0.3
2,316,039	+		PGA1_c22320	0.67	-0.4
2,316,039	+		PGA1_c22320	0.67	-0.6
2,316,039	-		PGA1_c22320	0.67	+1.1
2,316,046	+		PGA1_c22320	0.67	+0.1
2,316,046	+		PGA1_c22320	0.67	-1.3
2,316,047	-		PGA1_c22320	0.68	-0.0
2,316,049	-		PGA1_c22320	0.68	-2.1
2,316,127	-		PGA1_c22320	0.77	+0.0
2,316,127	-		PGA1_c22320	0.77	+1.2
2,316,211	-		PGA1_c22320	0.86	+0.6
2,316,266	+				-0.4
2,316,421	-				+0.1
2,316,447	+				-0.4