Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01990

Experiment: marine broth pH 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c01980 and PGA1_c01990 are separated by 143 nucleotidesPGA1_c01990 and PGA1_c02000 are separated by 3 nucleotides PGA1_c01980: PGA1_c01980 - glutamate/glutamine/aspartate/asparagine-binding protein BztA, at 180,588 to 181,604 _c01980 PGA1_c01990: PGA1_c01990 - glutamate/glutamine/aspartate/asparagine transport system permease protein BztB, at 181,748 to 182,980 _c01990 PGA1_c02000: PGA1_c02000 - glutamate/glutamine/aspartate/asparagine transport system permease protein BztC, at 182,984 to 184,282 _c02000 Position (kb) 181 182 183Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 180.754 kb on + strand, within PGA1_c01980at 180.792 kb on + strand, within PGA1_c01980at 180.918 kb on + strand, within PGA1_c01980at 180.957 kb on + strand, within PGA1_c01980at 180.965 kb on - strand, within PGA1_c01980at 181.013 kb on - strand, within PGA1_c01980at 181.090 kb on + strand, within PGA1_c01980at 181.096 kb on + strand, within PGA1_c01980at 181.161 kb on - strand, within PGA1_c01980at 181.172 kb on + strand, within PGA1_c01980at 181.312 kb on - strand, within PGA1_c01980at 181.325 kb on + strand, within PGA1_c01980at 181.580 kb on + strandat 181.627 kb on + strandat 181.635 kb on - strandat 181.655 kb on + strandat 181.688 kb on - strandat 181.714 kb on + strandat 181.721 kb on + strandat 181.757 kb on + strandat 181.779 kb on + strandat 181.850 kb on + strandat 181.855 kb on + strandat 181.866 kb on + strandat 181.892 kb on - strand, within PGA1_c01990at 181.910 kb on + strand, within PGA1_c01990at 181.918 kb on - strand, within PGA1_c01990at 181.918 kb on - strand, within PGA1_c01990at 182.021 kb on + strand, within PGA1_c01990at 182.084 kb on - strand, within PGA1_c01990at 182.095 kb on + strand, within PGA1_c01990at 182.281 kb on - strand, within PGA1_c01990at 182.339 kb on - strand, within PGA1_c01990at 182.371 kb on + strand, within PGA1_c01990at 182.371 kb on + strand, within PGA1_c01990at 182.371 kb on + strand, within PGA1_c01990at 182.379 kb on - strand, within PGA1_c01990at 182.384 kb on - strand, within PGA1_c01990at 182.407 kb on - strand, within PGA1_c01990at 182.483 kb on - strand, within PGA1_c01990at 182.515 kb on + strand, within PGA1_c01990at 182.523 kb on - strand, within PGA1_c01990at 182.523 kb on - strand, within PGA1_c01990at 182.525 kb on - strand, within PGA1_c01990at 182.556 kb on - strand, within PGA1_c01990at 182.592 kb on + strand, within PGA1_c01990at 182.608 kb on - strand, within PGA1_c01990at 182.648 kb on + strand, within PGA1_c01990at 182.666 kb on + strand, within PGA1_c01990at 182.674 kb on - strand, within PGA1_c01990at 182.674 kb on - strand, within PGA1_c01990at 182.810 kb on + strand, within PGA1_c01990at 182.818 kb on - strand, within PGA1_c01990at 182.828 kb on - strand, within PGA1_c01990at 182.853 kb on + strand, within PGA1_c01990at 182.988 kb on + strandat 182.999 kb on - strandat 183.069 kb on - strandat 183.142 kb on + strand, within PGA1_c02000at 183.142 kb on + strand, within PGA1_c02000at 183.150 kb on - strand, within PGA1_c02000at 183.150 kb on - strand, within PGA1_c02000at 183.150 kb on - strand, within PGA1_c02000at 183.152 kb on + strand, within PGA1_c02000at 183.232 kb on - strand, within PGA1_c02000at 183.380 kb on - strand, within PGA1_c02000at 183.380 kb on - strand, within PGA1_c02000at 183.392 kb on + strand, within PGA1_c02000at 183.473 kb on - strand, within PGA1_c02000at 183.483 kb on - strand, within PGA1_c02000at 183.530 kb on + strand, within PGA1_c02000at 183.533 kb on - strand, within PGA1_c02000at 183.533 kb on - strand, within PGA1_c02000at 183.538 kb on - strand, within PGA1_c02000at 183.541 kb on + strand, within PGA1_c02000at 183.622 kb on + strand, within PGA1_c02000at 183.635 kb on - strand, within PGA1_c02000at 183.647 kb on - strand, within PGA1_c02000at 183.674 kb on - strand, within PGA1_c02000at 183.685 kb on - strand, within PGA1_c02000at 183.685 kb on - strand, within PGA1_c02000at 183.721 kb on + strand, within PGA1_c02000at 183.736 kb on + strand, within PGA1_c02000at 183.744 kb on - strand, within PGA1_c02000at 183.744 kb on - strand, within PGA1_c02000at 183.751 kb on + strand, within PGA1_c02000at 183.751 kb on + strand, within PGA1_c02000at 183.871 kb on + strand, within PGA1_c02000at 183.939 kb on + strand, within PGA1_c02000at 183.960 kb on - strand, within PGA1_c02000at 183.979 kb on - strand, within PGA1_c02000

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth pH 6
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180,754 + PGA1_c01980 0.16 -1.1
180,792 + PGA1_c01980 0.20 -1.6
180,918 + PGA1_c01980 0.32 +1.6
180,957 + PGA1_c01980 0.36 +0.2
180,965 - PGA1_c01980 0.37 +1.4
181,013 - PGA1_c01980 0.42 -2.5
181,090 + PGA1_c01980 0.49 +0.6
181,096 + PGA1_c01980 0.50 -0.5
181,161 - PGA1_c01980 0.56 +0.0
181,172 + PGA1_c01980 0.57 -0.6
181,312 - PGA1_c01980 0.71 -2.3
181,325 + PGA1_c01980 0.72 -3.1
181,580 + -1.3
181,627 + -1.5
181,635 - -3.2
181,655 + -0.7
181,688 - -1.7
181,714 + -1.4
181,721 + +0.2
181,757 + -1.7
181,779 + +2.0
181,850 + -1.5
181,855 + +0.6
181,866 + +0.8
181,892 - PGA1_c01990 0.12 -0.7
181,910 + PGA1_c01990 0.13 -1.0
181,918 - PGA1_c01990 0.14 -1.6
181,918 - PGA1_c01990 0.14 -1.5
182,021 + PGA1_c01990 0.22 +1.2
182,084 - PGA1_c01990 0.27 -0.1
182,095 + PGA1_c01990 0.28 -2.5
182,281 - PGA1_c01990 0.43 -1.6
182,339 - PGA1_c01990 0.48 -2.2
182,371 + PGA1_c01990 0.51 +0.2
182,371 + PGA1_c01990 0.51 -0.7
182,371 + PGA1_c01990 0.51 -0.7
182,379 - PGA1_c01990 0.51 +0.3
182,384 - PGA1_c01990 0.52 -0.1
182,407 - PGA1_c01990 0.53 -2.2
182,483 - PGA1_c01990 0.60 +0.0
182,515 + PGA1_c01990 0.62 -1.5
182,523 - PGA1_c01990 0.63 -1.1
182,523 - PGA1_c01990 0.63 -1.3
182,525 - PGA1_c01990 0.63 -3.3
182,556 - PGA1_c01990 0.66 +1.3
182,592 + PGA1_c01990 0.68 -2.3
182,608 - PGA1_c01990 0.70 -0.6
182,648 + PGA1_c01990 0.73 -1.4
182,666 + PGA1_c01990 0.74 -3.1
182,674 - PGA1_c01990 0.75 -0.9
182,674 - PGA1_c01990 0.75 -0.4
182,810 + PGA1_c01990 0.86 +1.1
182,818 - PGA1_c01990 0.87 -2.9
182,828 - PGA1_c01990 0.88 -0.2
182,853 + PGA1_c01990 0.90 +0.8
182,988 + -0.7
182,999 - -0.6
183,069 - +0.6
183,142 + PGA1_c02000 0.12 -1.3
183,142 + PGA1_c02000 0.12 -1.3
183,150 - PGA1_c02000 0.13 -1.1
183,150 - PGA1_c02000 0.13 -0.7
183,150 - PGA1_c02000 0.13 +1.0
183,152 + PGA1_c02000 0.13 +0.3
183,232 - PGA1_c02000 0.19 -0.7
183,380 - PGA1_c02000 0.30 -0.2
183,380 - PGA1_c02000 0.30 -0.6
183,392 + PGA1_c02000 0.31 -2.2
183,473 - PGA1_c02000 0.38 -2.1
183,483 - PGA1_c02000 0.38 -0.7
183,530 + PGA1_c02000 0.42 -0.2
183,533 - PGA1_c02000 0.42 -2.1
183,533 - PGA1_c02000 0.42 +1.1
183,538 - PGA1_c02000 0.43 -2.0
183,541 + PGA1_c02000 0.43 -1.1
183,622 + PGA1_c02000 0.49 +0.4
183,635 - PGA1_c02000 0.50 -0.7
183,647 - PGA1_c02000 0.51 -1.5
183,674 - PGA1_c02000 0.53 -0.5
183,685 - PGA1_c02000 0.54 -1.3
183,685 - PGA1_c02000 0.54 +1.8
183,721 + PGA1_c02000 0.57 -1.4
183,736 + PGA1_c02000 0.58 -1.6
183,744 - PGA1_c02000 0.59 +0.7
183,744 - PGA1_c02000 0.59 +0.4
183,751 + PGA1_c02000 0.59 -0.3
183,751 + PGA1_c02000 0.59 -2.8
183,871 + PGA1_c02000 0.68 -3.6
183,939 + PGA1_c02000 0.74 +1.5
183,960 - PGA1_c02000 0.75 -1.2
183,979 - PGA1_c02000 0.77 -0.6

Or see this region's nucleotide sequence