Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c18280

Experiment: marine broth pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth pH 6
1,910,867	-		PGA1_c18270	0.24	-0.5
1,910,868	+		PGA1_c18270	0.24	-0.4
1,910,868	+		PGA1_c18270	0.24	+2.6
1,910,876	-		PGA1_c18270	0.24	-1.3
1,910,876	-		PGA1_c18270	0.24	-0.9
1,910,915	+		PGA1_c18270	0.28	+0.0
1,910,927	-		PGA1_c18270	0.29	+0.5
1,910,927	-		PGA1_c18270	0.29	-0.6
1,910,938	-		PGA1_c18270	0.30	+1.4
1,911,071	-		PGA1_c18270	0.40	+0.2
1,911,177	+		PGA1_c18270	0.49	-3.9
1,911,179	-		PGA1_c18270	0.49	+0.7
1,911,184	-		PGA1_c18270	0.50	+0.4
1,911,209	-		PGA1_c18270	0.52	-0.8
1,911,209	-		PGA1_c18270	0.52	-0.2
1,911,229	+		PGA1_c18270	0.53	-0.3
1,911,232	-		PGA1_c18270	0.54	+2.6
1,911,232	-		PGA1_c18270	0.54	+1.8
1,911,232	-		PGA1_c18270	0.54	+0.1
1,911,232	-		PGA1_c18270	0.54	+0.1
1,911,232	-		PGA1_c18270	0.54	+0.2
1,911,232	-		PGA1_c18270	0.54	+0.4
1,911,232	-		PGA1_c18270	0.54	+2.1
1,911,232	-		PGA1_c18270	0.54	+0.6
1,911,232	-		PGA1_c18270	0.54	-0.8
1,911,237	-				-1.6
1,911,237	-		PGA1_c18270	0.54	+1.4
1,911,251	-		PGA1_c18270	0.55	-1.9
1,911,361	+		PGA1_c18270	0.64	+0.7
1,911,361	+		PGA1_c18270	0.64	+0.2
1,911,374	-		PGA1_c18270	0.65	-0.6
1,911,379	-		PGA1_c18270	0.66	-1.2
1,911,406	+		PGA1_c18270	0.68	-0.7
1,911,430	-		PGA1_c18270	0.70	+0.4
1,911,430	-		PGA1_c18270	0.70	-0.0
1,911,430	-		PGA1_c18270	0.70	-0.8
1,911,430	-		PGA1_c18270	0.70	+0.7
1,911,433	+		PGA1_c18270	0.70	+1.5
1,911,443	+		PGA1_c18270	0.71	-1.5
1,911,443	+		PGA1_c18270	0.71	+0.1
1,911,443	+		PGA1_c18270	0.71	-3.1
1,911,443	+		PGA1_c18270	0.71	+0.8
1,911,451	-		PGA1_c18270	0.72	+0.6
1,911,451	-		PGA1_c18270	0.72	-2.2
1,911,451	-		PGA1_c18270	0.72	-1.2
1,911,451	-		PGA1_c18270	0.72	-0.6
1,911,451	-		PGA1_c18270	0.72	+0.1
1,911,451	-		PGA1_c18270	0.72	+2.3
1,911,451	-		PGA1_c18270	0.72	+0.9
1,911,451	-		PGA1_c18270	0.72	-0.9
1,911,451	-		PGA1_c18270	0.72	+0.3
1,911,451	-		PGA1_c18270	0.72	-0.5
1,911,451	-		PGA1_c18270	0.72	-2.4
1,911,451	-		PGA1_c18270	0.72	+1.0
1,911,451	-		PGA1_c18270	0.72	-2.2
1,911,532	+		PGA1_c18270	0.78	+0.7
1,911,550	-		PGA1_c18270	0.80	+0.6
1,911,550	-		PGA1_c18270	0.80	+1.1
1,911,550	-		PGA1_c18270	0.80	+1.4
1,911,550	-		PGA1_c18270	0.80	+0.8
1,911,555	-		PGA1_c18270	0.80	-1.1
1,911,661	+		PGA1_c18270	0.89	-2.5
1,911,666	+		PGA1_c18270	0.89	+1.7
1,911,674	-				+1.8
1,911,747	+				-0.0
1,911,768	+				+0.2
1,911,768	+				+0.3
1,911,776	-				+0.5
1,911,793	+				+0.4
1,911,793	+				-0.6
1,911,793	+				+3.1
1,911,801	-				+0.6
1,911,811	-				-1.7
1,911,818	-				-1.0
1,911,848	-				+0.1
1,911,874	+				-0.6
1,911,894	+				+0.8
1,911,916	-		PGA1_c18280	0.12	+0.2
1,911,935	+		PGA1_c18280	0.16	-0.0
1,911,948	-		PGA1_c18280	0.19	+0.1
1,911,959	-		PGA1_c18280	0.22	+1.4
1,911,963	+		PGA1_c18280	0.22	+0.4
1,912,059	-		PGA1_c18280	0.44	+2.2
1,912,086	+		PGA1_c18280	0.50	+2.1
1,912,086	+		PGA1_c18280	0.50	-1.2
1,912,106	+		PGA1_c18280	0.54	-0.2
1,912,154	+		PGA1_c18280	0.65	+0.9
1,912,154	+		PGA1_c18280	0.65	+2.1
1,912,169	-		PGA1_c18280	0.68	+0.4
1,912,194	+		PGA1_c18280	0.74	-0.3
1,912,207	+		PGA1_c18280	0.77	-4.5
1,912,279	+				-0.8
1,912,279	+				+0.4
1,912,340	+				-0.1
1,912,353	+		PGA1_c18290	0.10	-0.0
1,912,361	-		PGA1_c18290	0.12	+0.1
1,912,361	-		PGA1_c18290	0.12	+0.0
1,912,386	+		PGA1_c18290	0.18	+2.0
1,912,418	+		PGA1_c18290	0.26	+0.5
1,912,418	+		PGA1_c18290	0.26	+0.3
1,912,418	+		PGA1_c18290	0.26	-3.3
1,912,426	-		PGA1_c18290	0.28	-0.4
1,912,431	+		PGA1_c18290	0.29	+0.4
1,912,517	-		PGA1_c18290	0.50	-2.2
1,912,553	+		PGA1_c18290	0.59	-0.3
1,912,579	+		PGA1_c18290	0.65	+0.7
1,912,587	-		PGA1_c18290	0.67	+1.5
1,912,587	-		PGA1_c18290	0.67	-1.4
1,912,620	-		PGA1_c18290	0.75	-1.8
1,912,620	-		PGA1_c18290	0.75	+0.8
1,912,631	+		PGA1_c18290	0.78	+0.6
1,912,631	+		PGA1_c18290	0.78	-0.2
1,912,639	-		PGA1_c18290	0.80	+1.4
1,912,665	-		PGA1_c18290	0.86	-1.2
1,912,732	+				-0.2
1,912,737	+				+0.6
1,912,744	+				-0.8
1,912,745	-				+0.3
1,912,746	-				+0.1
1,912,746	-				+0.7
1,912,752	-				+1.8
1,912,752	-				-1.3
1,912,752	-				+1.5
1,912,752	-				+0.2
1,912,752	-				-0.4
1,912,752	-				-0.6
1,912,752	-				+0.5
1,912,752	-				-0.3
1,912,838	+				+1.2
1,912,876	+		PGA1_c18300	0.11	+0.8
1,912,993	+		PGA1_c18300	0.21	+0.5
1,912,993	+		PGA1_c18300	0.21	-0.1
1,913,001	-		PGA1_c18300	0.22	+0.2
1,913,110	+		PGA1_c18300	0.31	-0.5
1,913,118	-		PGA1_c18300	0.32	-0.3
1,913,118	-		PGA1_c18300	0.32	-0.4
1,913,136	+		PGA1_c18300	0.34	+0.8
1,913,143	+		PGA1_c18300	0.34	-0.5
1,913,168	+		PGA1_c18300	0.36	-1.5
1,913,176	-		PGA1_c18300	0.37	-0.6
1,913,176	-		PGA1_c18300	0.37	-0.2
1,913,176	-		PGA1_c18300	0.37	+2.2
1,913,176	-		PGA1_c18300	0.37	+0.0
1,913,224	+		PGA1_c18300	0.41	-1.0
1,913,232	-		PGA1_c18300	0.42	+1.4
1,913,280	+		PGA1_c18300	0.46	-2.0
1,913,288	-		PGA1_c18300	0.47	+2.2
1,913,295	+		PGA1_c18300	0.47	-3.1
1,913,303	-		PGA1_c18300	0.48	+0.5
1,913,308	-		PGA1_c18300	0.48	-1.8
1,913,308	-		PGA1_c18300	0.48	-0.1