Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c17080

Experiment: marine broth pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth pH 6
1,782,866	+		PGA1_c17070	0.26	-0.7
1,782,866	+		PGA1_c17070	0.26	-0.3
1,782,866	+		PGA1_c17070	0.26	-0.5
1,782,866	+		PGA1_c17070	0.26	+2.4
1,782,873	+		PGA1_c17070	0.27	+0.2
1,782,874	-		PGA1_c17070	0.27	+0.2
1,782,874	-		PGA1_c17070	0.27	-1.0
1,782,874	-		PGA1_c17070	0.27	+0.8
1,782,881	+		PGA1_c17070	0.28	+0.0
1,782,912	+		PGA1_c17070	0.31	-0.9
1,782,932	+		PGA1_c17070	0.33	-2.0
1,782,962	+		PGA1_c17070	0.36	-1.7
1,783,035	+		PGA1_c17070	0.44	+0.9
1,783,038	-		PGA1_c17070	0.44	+0.1
1,783,040	+		PGA1_c17070	0.45	+0.3
1,783,040	+		PGA1_c17070	0.45	+0.0
1,783,043	-		PGA1_c17070	0.45	+0.4
1,783,048	-		PGA1_c17070	0.46	-2.7
1,783,058	-		PGA1_c17070	0.47	+0.6
1,783,131	+		PGA1_c17070	0.54	-0.4
1,783,134	-		PGA1_c17070	0.55	+1.7
1,783,138	+		PGA1_c17070	0.55	-1.0
1,783,163	-		PGA1_c17070	0.58	+1.2
1,783,190	+		PGA1_c17070	0.60	-1.4
1,783,207	-		PGA1_c17070	0.62	+0.8
1,783,231	+		PGA1_c17070	0.65	-0.0
1,783,231	+		PGA1_c17070	0.65	-0.6
1,783,313	+		PGA1_c17070	0.73	+0.7
1,783,315	-		PGA1_c17070	0.74	-2.0
1,783,392	-		PGA1_c17070	0.82	+0.5
1,783,444	+		PGA1_c17070	0.87	+0.9
1,783,452	-		PGA1_c17070	0.88	+1.3
1,783,463	+		PGA1_c17070	0.89	+0.6
1,783,542	-				-0.6
1,783,706	+				-0.5
1,783,706	-				+0.4
1,783,786	-				-0.7
1,783,786	-				+0.8
1,783,791	-				-0.5
1,783,795	+				+0.9
1,783,803	-				-0.2
1,783,844	+				-0.1
1,783,852	-				+0.5
1,783,994	+				-0.6
1,783,994	+				+0.7
1,784,002	-				+0.0
1,784,002	-				-0.5
1,784,042	-				-1.2
1,784,042	-				+0.2
1,784,151	-		PGA1_c17080	0.10	+0.8
1,784,183	-		PGA1_c17080	0.11	-1.6
1,784,204	+		PGA1_c17080	0.12	+0.0
1,784,230	-		PGA1_c17080	0.13	-0.8
1,784,269	-		PGA1_c17080	0.14	-0.2
1,784,288	+		PGA1_c17080	0.14	+1.1
1,784,294	+		PGA1_c17080	0.15	+0.1
1,784,362	-		PGA1_c17080	0.16	+0.4
1,784,378	-		PGA1_c17080	0.17	-0.6
1,784,378	-		PGA1_c17080	0.17	+0.3
1,784,380	-		PGA1_c17080	0.17	-0.0
1,784,476	+		PGA1_c17080	0.20	-1.1
1,784,489	-		PGA1_c17080	0.20	-0.5
1,784,499	+		PGA1_c17080	0.20	+1.1
1,784,539	-		PGA1_c17080	0.22	-0.1
1,784,792	-		PGA1_c17080	0.29	-2.8
1,784,804	+		PGA1_c17080	0.29	-1.5
1,784,842	-		PGA1_c17080	0.31	-0.6
1,784,902	-		PGA1_c17080	0.32	+0.2
1,785,036	-		PGA1_c17080	0.36	-1.9
1,785,069	+		PGA1_c17080	0.37	-1.6
1,785,104	-		PGA1_c17080	0.38	-2.1
1,785,106	+		PGA1_c17080	0.38	-0.3
1,785,109	-		PGA1_c17080	0.38	-0.8
1,785,109	-		PGA1_c17080	0.38	-0.2
1,785,109	-		PGA1_c17080	0.38	-0.9
1,785,326	-		PGA1_c17080	0.45	-1.1
1,785,326	-		PGA1_c17080	0.45	-0.2
1,785,397	+		PGA1_c17080	0.47	-0.9
1,785,405	-		PGA1_c17080	0.47	-0.3
1,785,410	-		PGA1_c17080	0.47	-1.2
1,785,463	-		PGA1_c17080	0.49	+1.5
1,785,607	-		PGA1_c17080	0.53	-2.0
1,785,676	-		PGA1_c17080	0.55	+1.2
1,785,778	+		PGA1_c17080	0.58	-0.4
1,785,786	-		PGA1_c17080	0.58	-2.2
1,785,786	-		PGA1_c17080	0.58	+0.8
1,785,786	-		PGA1_c17080	0.58	-1.5
1,785,801	+		PGA1_c17080	0.59	-1.2
1,786,070	-		PGA1_c17080	0.66	-0.6
1,786,070	-		PGA1_c17080	0.66	-2.8
1,786,123	+		PGA1_c17080	0.68	-1.2
1,786,144	+		PGA1_c17080	0.69	-0.8
1,786,221	+		PGA1_c17080	0.71	-1.0
1,786,229	-		PGA1_c17080	0.71	+1.0
1,786,229	-		PGA1_c17080	0.71	+0.6
1,786,230	-		PGA1_c17080	0.71	-2.8
1,786,281	+		PGA1_c17080	0.73	-0.3
1,786,289	-		PGA1_c17080	0.73	-0.8
1,786,351	-		PGA1_c17080	0.75	-0.1
1,786,371	-		PGA1_c17080	0.75	-0.9
1,786,371	-		PGA1_c17080	0.75	-0.9
1,786,737	+		PGA1_c17080	0.86	+0.2
1,786,747	+		PGA1_c17080	0.86	-1.0
1,786,937	+				+0.9
1,786,952	+				-3.3
1,787,067	-				-1.2
1,787,074	-				-3.1
1,787,074	-				-1.4
1,787,076	+				+2.0
1,787,076	+				-0.5
1,787,084	-				-3.3
1,787,084	-				-0.2
1,787,084	-				-0.7
1,787,086	-				-0.2
1,787,094	-				-1.7
1,787,099	+				-3.2
1,787,215	+				+1.1
1,787,225	-				-2.4
1,787,225	-				+0.8
1,787,225	-				-1.2
1,787,225	-				-2.2
1,787,226	+				-0.9
1,787,227	+				-1.4
1,787,235	-				-0.4
1,787,240	-				+0.9
1,787,240	-				-0.0
1,787,300	-				-0.4
1,787,358	+				-1.4
1,787,358	-				+0.1
1,787,369	-				-1.8
1,787,401	+				-3.2
1,787,435	+				-2.3
1,788,023	-		PGA1_c17090	0.70	-2.2