Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c12960

Experiment: marine broth pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth pH 6
1,340,229	-		PGA1_c12950	0.75	+0.2
1,340,229	-		PGA1_c12950	0.75	-0.8
1,340,229	-		PGA1_c12950	0.75	-0.7
1,340,299	+		PGA1_c12950	0.79	+0.1
1,340,307	-		PGA1_c12950	0.79	-1.1
1,340,307	-		PGA1_c12950	0.79	+0.5
1,340,307	-		PGA1_c12950	0.79	+1.3
1,340,307	-		PGA1_c12950	0.79	-1.8
1,340,345	+		PGA1_c12950	0.81	+1.6
1,340,347	+		PGA1_c12950	0.81	+1.0
1,340,413	+		PGA1_c12950	0.84	-1.3
1,340,440	-		PGA1_c12950	0.85	+0.1
1,340,440	-		PGA1_c12950	0.85	+0.6
1,340,450	+		PGA1_c12950	0.86	-1.2
1,340,458	-		PGA1_c12950	0.86	+0.9
1,340,523	+		PGA1_c12950	0.89	+0.7
1,340,555	-				-3.1
1,340,638	-				+0.5
1,340,640	+				+2.5
1,340,643	-				+1.5
1,340,648	-				-0.5
1,340,657	+				+0.3
1,340,657	+				+1.0
1,340,657	+				-1.4
1,340,657	+				-0.7
1,340,657	+				-2.2
1,340,660	-				+1.0
1,340,660	-				+2.1
1,340,660	-				+0.7
1,340,660	-				+0.3
1,340,660	-				-0.3
1,340,665	-				+1.6
1,340,687	+				-0.8
1,340,692	-				+0.7
1,340,745	+				-0.5
1,340,751	+				-1.6
1,340,753	-				-3.1
1,340,753	-				+0.5
1,340,813	-				+0.3
1,340,894	+				+1.6
1,340,897	-				-0.4
1,340,902	-				+0.5
1,340,902	-				+0.5
1,340,902	-				-1.1
1,340,921	-				+1.5
1,340,926	-				+1.7
1,340,945	+				-0.3
1,340,953	-				+0.8
1,340,961	+				-2.5
1,340,961	+				+0.1
1,340,969	-				+0.5
1,340,969	-				+0.9
1,341,010	+				+0.7
1,341,015	+				-2.0
1,341,018	-				-2.6
1,341,034	-				+0.6
1,341,034	-				+2.2
1,341,107	+				-2.1
1,341,115	+				+0.4
1,341,115	+				-0.5
1,341,124	-				+1.3
1,341,144	+				-0.1
1,341,147	-				-0.3
1,341,149	+				-1.3
1,341,157	-				-1.0
1,341,205	+				-0.8
1,341,218	+				+0.6
1,341,228	+				-0.9
1,341,249	-				-2.1
1,341,253	+				+1.1
1,341,266	-				+0.4
1,341,460	+		PGA1_c12960	0.24	-1.1
1,341,470	+		PGA1_c12960	0.25	-1.7
1,341,478	-		PGA1_c12960	0.25	-0.5
1,341,480	+		PGA1_c12960	0.26	+0.7
1,341,480	+		PGA1_c12960	0.26	+0.2
1,341,488	-		PGA1_c12960	0.26	-0.3
1,341,522	-		PGA1_c12960	0.30	-2.3
1,341,535	-		PGA1_c12960	0.31	-0.7
1,341,661	-		PGA1_c12960	0.43	+1.6
1,341,799	-		PGA1_c12960	0.57	-0.5
1,341,838	+		PGA1_c12960	0.61	-0.6
1,341,846	+		PGA1_c12960	0.62	-0.4
1,341,893	+		PGA1_c12960	0.66	-0.3
1,341,899	+		PGA1_c12960	0.67	-1.1
1,341,924	-		PGA1_c12960	0.69	-2.3
1,341,953	+		PGA1_c12960	0.72	+0.1
1,342,096	+		PGA1_c12960	0.86	-0.9
1,342,166	+				-3.0
1,342,166	+				-1.2
1,342,174	-				+1.7
1,342,174	-				+1.0
1,342,177	+				+3.6
1,342,192	-				+1.5
1,342,209	-				+1.6
1,342,234	+				-1.8
1,342,234	+				+0.8
1,342,234	+				+0.2
1,342,274	-				-1.4
1,342,274	-				+1.2
1,342,274	-				-0.5
1,342,310	-				-2.1
1,342,326	-				-0.5
1,342,326	-				-0.1
1,342,340	-				+1.0
1,342,390	-		PGA1_c12970	0.10	-1.8
1,342,419	+		PGA1_c12970	0.15	+0.7
1,342,491	+		PGA1_c12970	0.26	-1.5
1,342,500	+		PGA1_c12970	0.27	-0.7
1,342,514	+		PGA1_c12970	0.29	-0.3
1,342,518	-		PGA1_c12970	0.30	+1.3
1,342,519	+		PGA1_c12970	0.30	-1.2
1,342,643	+		PGA1_c12970	0.49	-0.6
1,342,646	-		PGA1_c12970	0.50	+0.8
1,342,646	-		PGA1_c12970	0.50	-0.7
1,342,659	-		PGA1_c12970	0.52	+2.3
1,342,675	+		PGA1_c12970	0.54	+1.8
1,342,675	+		PGA1_c12970	0.54	-0.3
1,342,675	+		PGA1_c12970	0.54	+0.8
1,342,675	+		PGA1_c12970	0.54	-2.1
1,342,675	+		PGA1_c12970	0.54	-1.6
1,342,675	+		PGA1_c12970	0.54	-1.1
1,342,675	+		PGA1_c12970	0.54	-0.5
1,342,675	+		PGA1_c12970	0.54	+0.1
1,342,675	+		PGA1_c12970	0.54	-0.7
1,342,675	+		PGA1_c12970	0.54	+0.2
1,342,675	+		PGA1_c12970	0.54	-0.7
1,342,675	+		PGA1_c12970	0.54	+0.0
1,342,675	+		PGA1_c12970	0.54	+2.2
1,342,675	+		PGA1_c12970	0.54	-0.4
1,342,683	-		PGA1_c12970	0.55	+0.3
1,342,683	-		PGA1_c12970	0.55	+0.8
1,342,683	-		PGA1_c12970	0.55	+2.6
1,342,683	-		PGA1_c12970	0.55	+0.5
1,342,683	-		PGA1_c12970	0.55	+1.0
1,342,683	-		PGA1_c12970	0.55	-0.9
1,342,683	-		PGA1_c12970	0.55	+0.7
1,342,694	+		PGA1_c12970	0.57	-0.2
1,342,715	-		PGA1_c12970	0.60	-0.6
1,342,727	+		PGA1_c12970	0.62	-1.1
1,342,727	+		PGA1_c12970	0.62	-2.3
1,342,733	+		PGA1_c12970	0.63	+2.0
1,342,839	-		PGA1_c12970	0.79	+3.5
1,342,864	-		PGA1_c12970	0.83	-0.8
1,342,902	+		PGA1_c12970	0.89	-2.3
1,342,931	+				-3.9
1,342,933	+				+0.1
1,342,951	-				-0.0
1,343,036	-				-1.5
1,343,155	+		PGA1_c12980	0.12	-2.7
1,343,191	-		PGA1_c12980	0.15	+0.1
1,343,210	+		PGA1_c12980	0.16	-0.0
1,343,210	+		PGA1_c12980	0.16	+1.2
1,343,222	+		PGA1_c12980	0.17	+0.0