Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01140

Experiment: marine broth pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth pH 6
105,651	+				-0.5
105,707	-				-0.6
105,737	-				-1.1
105,737	-				-1.1
105,737	-				-1.4
105,745	-				+0.5
105,782	+		PGA1_c01130	0.13	+0.1
105,790	-		PGA1_c01130	0.14	-0.6
105,790	-		PGA1_c01130	0.14	-0.3
105,823	-		PGA1_c01130	0.18	+1.6
105,833	-		PGA1_c01130	0.19	+0.5
105,880	+		PGA1_c01130	0.24	-1.2
105,910	-		PGA1_c01130	0.28	+0.5
105,935	+		PGA1_c01130	0.30	-1.6
106,001	+		PGA1_c01130	0.38	-0.6
106,001	+		PGA1_c01130	0.38	-0.3
106,009	-		PGA1_c01130	0.39	-0.3
106,069	+		PGA1_c01130	0.45	+1.7
106,112	+		PGA1_c01130	0.50	-0.3
106,135	-		PGA1_c01130	0.53	+0.2
106,145	+		PGA1_c01130	0.54	+2.1
106,153	-		PGA1_c01130	0.55	-0.6
106,207	-		PGA1_c01130	0.61	+0.2
106,247	+		PGA1_c01130	0.65	-0.1
106,254	-		PGA1_c01130	0.66	-1.3
106,255	-		PGA1_c01130	0.66	+0.4
106,277	+		PGA1_c01130	0.68	+0.0
106,311	-		PGA1_c01130	0.72	+1.5
106,369	+		PGA1_c01130	0.79	-1.1
106,380	+		PGA1_c01130	0.80	+1.3
106,384	+		PGA1_c01130	0.80	-1.8
106,463	+		PGA1_c01130	0.89	+1.0
106,498	+				-1.6
106,507	-				+0.4
106,537	-				-1.1
106,548	+				+0.3
106,553	+				+0.3
106,553	+				-0.1
106,556	-				-0.3
106,601	+				+0.0
106,601	+				-2.3
106,633	-				-0.5
106,636	-				+0.2
106,651	+				+0.5
106,651	+				-2.6
106,659	-				-1.3
106,677	-				-2.2
106,685	+				-2.2
106,888	-		PGA1_c01140	0.16	-1.5
106,942	+		PGA1_c01140	0.19	-2.6
107,014	-		PGA1_c01140	0.24	-0.2
107,033	+		PGA1_c01140	0.25	-2.3
107,160	-		PGA1_c01140	0.33	-1.8
107,165	+		PGA1_c01140	0.33	-1.9
107,721	+		PGA1_c01140	0.68	+0.0
107,757	+		PGA1_c01140	0.70	-1.8
107,811	+		PGA1_c01140	0.74	+0.7
107,814	-		PGA1_c01140	0.74	+0.9
107,819	-		PGA1_c01140	0.74	-0.6
107,839	+		PGA1_c01140	0.75	-1.2
107,839	+		PGA1_c01140	0.75	-1.6
107,847	-		PGA1_c01140	0.76	-0.7
107,914	+		PGA1_c01140	0.80	-1.8
107,930	+		PGA1_c01140	0.81	-0.4
107,930	+		PGA1_c01140	0.81	-1.5
107,960	+		PGA1_c01140	0.83	+0.3
107,982	-		PGA1_c01140	0.84	-0.4
108,052	-		PGA1_c01140	0.89	-1.0
108,120	+				-1.2
108,128	-				-0.7
108,128	-				-1.4
108,153	-				-1.1
108,179	-				-2.0
108,194	-				+0.2
108,256	+				-2.6
108,256	-				-1.4
108,265	-				-0.4
108,324	+				-1.0
108,338	+				-2.6
108,350	+				+1.4
108,350	+				-0.3
108,350	+				-1.3
108,350	+				-1.3
108,350	+				-0.3
108,350	+				+0.2
108,350	+				+0.7
108,358	-				-1.0
108,358	-				+1.8
108,358	-				+0.5
108,358	-				-1.8
108,360	+				-3.0
108,360	+				-0.7
108,360	+				+0.9
108,368	-				+0.7
108,368	-				-0.3
108,368	-				-1.6
108,479	+				-0.4
108,480	+				-0.7
108,488	-				-1.8
108,498	-				-1.3
108,527	+				+0.7
108,548	-				-1.0
108,564	+				-0.9
108,564	+				+1.1
108,564	+				-0.8
108,564	+				+1.0
108,567	-				-0.3
108,572	-				+1.5
108,572	-				-1.3
108,572	-				+1.0
108,572	-				+1.0
108,572	-				-3.5
108,575	+				+0.0
108,583	-				-0.8
108,583	-				-2.6
108,583	-				+0.6
108,583	-				-2.6
108,601	-				-1.6
108,616	-				-1.1
108,639	+				-1.7
108,639	+				+0.7
108,639	+				+0.6
108,639	+				+1.7
108,639	-				-3.5
108,641	-				-0.7
108,647	+				-0.3
108,647	-				+0.9
108,647	-				+1.4
108,647	-				-0.5
108,647	-				+0.5
108,647	-				-0.1
108,647	-				-2.3
108,654	-		PGA1_c01150	0.10	-0.2
108,654	-		PGA1_c01150	0.10	-1.6
108,655	-		PGA1_c01150	0.11	-2.3
108,655	-		PGA1_c01150	0.11	+0.1
108,662	+		PGA1_c01150	0.12	+2.4
108,662	-		PGA1_c01150	0.12	-1.7
108,662	-		PGA1_c01150	0.12	-2.6
108,678	-		PGA1_c01150	0.14	-0.9
108,689	+		PGA1_c01150	0.15	+0.2
108,689	+		PGA1_c01150	0.15	-2.1
108,726	-		PGA1_c01150	0.21	+0.2
108,759	+		PGA1_c01150	0.25	-0.6
108,759	+		PGA1_c01150	0.25	-2.0
108,767	-		PGA1_c01150	0.26	+0.7
108,767	-		PGA1_c01150	0.26	+0.1
108,767	-		PGA1_c01150	0.26	+1.7
108,767	-		PGA1_c01150	0.26	-2.6
108,825	-		PGA1_c01150	0.35	+1.9
108,842	+		PGA1_c01150	0.37	-1.0
108,842	+		PGA1_c01150	0.37	-0.8
108,850	-		PGA1_c01150	0.38	-0.2
108,853	+		PGA1_c01150	0.39	-1.5
108,853	+		PGA1_c01150	0.39	+1.3
108,853	+		PGA1_c01150	0.39	-2.3
108,861	-		PGA1_c01150	0.40	+0.5
108,864	-		PGA1_c01150	0.40	+1.6
108,871	-		PGA1_c01150	0.41	-0.0
108,906	-		PGA1_c01150	0.46	+0.9
108,906	-		PGA1_c01150	0.46	+2.5
108,921	-		PGA1_c01150	0.48	-1.8
109,032	+		PGA1_c01150	0.64	-0.9
109,032	+		PGA1_c01150	0.64	+0.8
109,032	+		PGA1_c01150	0.64	+1.5
109,032	+		PGA1_c01150	0.64	-1.5
109,040	-		PGA1_c01150	0.65	-0.1
109,040	-		PGA1_c01150	0.65	+0.3
109,040	-		PGA1_c01150	0.65	-0.5
109,048	-		PGA1_c01150	0.67	-0.4
109,049	-		PGA1_c01150	0.67	-1.7
109,090	+		PGA1_c01150	0.73	+0.2
109,124	-		PGA1_c01150	0.77	+1.2
109,124	-		PGA1_c01150	0.77	-2.1
109,148	+		PGA1_c01150	0.81	+0.0
109,153	+		PGA1_c01150	0.81	-1.0
109,153	+		PGA1_c01150	0.81	+1.2
109,153	+		PGA1_c01150	0.81	-0.3
109,153	+		PGA1_c01150	0.81	+0.5
109,153	+		PGA1_c01150	0.81	+0.0
109,153	+		PGA1_c01150	0.81	-0.1
109,153	+		PGA1_c01150	0.81	+0.3
109,153	+		PGA1_c01150	0.81	+0.3
109,153	+		PGA1_c01150	0.81	+0.6
109,153	+		PGA1_c01150	0.81	-1.2
109,153	+		PGA1_c01150	0.81	-3.2
109,153	+		PGA1_c01150	0.81	+0.6
109,156	-		PGA1_c01150	0.82	+0.2
109,156	-		PGA1_c01150	0.82	-1.1
109,161	-		PGA1_c01150	0.83	-1.3
109,161	-		PGA1_c01150	0.83	-2.8
109,161	-		PGA1_c01150	0.83	-1.6
109,161	-		PGA1_c01150	0.83	-0.3
109,161	-		PGA1_c01150	0.83	+0.0
109,161	-		PGA1_c01150	0.83	+3.4
109,161	-		PGA1_c01150	0.83	+1.1
109,161	-		PGA1_c01150	0.83	+0.0
109,161	-		PGA1_c01150	0.83	+0.8
109,161	-		PGA1_c01150	0.83	-2.0
109,161	-		PGA1_c01150	0.83	-1.0
109,161	-		PGA1_c01150	0.83	+0.4
109,161	-		PGA1_c01150	0.83	-0.6
109,161	-		PGA1_c01150	0.83	+0.7
109,166	-		PGA1_c01150	0.83	-1.8
109,166	-		PGA1_c01150	0.83	-0.6
109,173	+		PGA1_c01150	0.84	+0.8
109,194	-		PGA1_c01150	0.87	-0.2