Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1396

Experiment: 15:15 LD cycle bioreactor

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	15:15 LD cycle bioreactor
1,444,761	-		Synpcc7942_1394	0.69	+0.6
1,444,774	-		Synpcc7942_1394	0.70	+0.2
1,444,792	-		Synpcc7942_1394	0.71	-0.4
1,444,806	-		Synpcc7942_1394	0.71	-0.1
1,444,819	+		Synpcc7942_1394	0.72	+0.3
1,444,860	+		Synpcc7942_1394	0.74	-0.7
1,444,863	-		Synpcc7942_1394	0.75	+0.6
1,444,888	-				+0.4
1,444,933	-		Synpcc7942_1394	0.79	+0.1
1,444,936	+		Synpcc7942_1394	0.79	+1.0
1,444,950	+		Synpcc7942_1394	0.80	+0.6
1,444,950	+		Synpcc7942_1394	0.80	-0.5
1,444,951	-		Synpcc7942_1394	0.80	+1.6
1,444,960	+		Synpcc7942_1394	0.80	-0.4
1,444,972	+		Synpcc7942_1394	0.81	-0.8
1,444,972	+		Synpcc7942_1394	0.81	+0.5
1,444,972	+		Synpcc7942_1394	0.81	-0.7
1,444,972	+		Synpcc7942_1394	0.81	-0.4
1,444,980	-		Synpcc7942_1394	0.81	+0.9
1,444,980	-		Synpcc7942_1394	0.81	-0.2
1,444,980	-		Synpcc7942_1394	0.81	+1.6
1,444,980	-		Synpcc7942_1394	0.81	-1.3
1,444,980	-		Synpcc7942_1394	0.81	-0.8
1,444,980	-		Synpcc7942_1394	0.81	+0.5
1,444,990	-		Synpcc7942_1394	0.82	+0.6
1,444,995	-		Synpcc7942_1394	0.82	+0.0
1,445,003	-		Synpcc7942_1394	0.83	+1.2
1,445,003	-		Synpcc7942_1394	0.83	+0.0
1,445,033	+		Synpcc7942_1394	0.84	-0.7
1,445,052	+		Synpcc7942_1394	0.85	-0.6
1,445,052	+		Synpcc7942_1394	0.85	-0.6
1,445,052	+		Synpcc7942_1394	0.85	+0.2
1,445,060	-		Synpcc7942_1394	0.86	+0.2
1,445,081	+		Synpcc7942_1394	0.87	+0.0
1,445,081	+		Synpcc7942_1394	0.87	-1.1
1,445,089	-		Synpcc7942_1394	0.87	-0.8
1,445,089	-		Synpcc7942_1394	0.87	-0.3
1,445,103	+		Synpcc7942_1394	0.88	+1.3
1,445,111	-		Synpcc7942_1394	0.89	+1.5
1,445,131	+		Synpcc7942_1394	0.90	-0.2
1,445,142	+				+1.6
1,445,142	+				+0.4
1,445,150	-				-0.7
1,445,156	-				-0.7
1,445,175	+				-0.9
1,445,175	+				+0.3
1,445,224	+				-0.1
1,445,224	+				+0.6
1,445,224	+				+1.6
1,445,257	-				-0.9
1,445,284	+				+2.0
1,445,289	+				-2.4
1,445,292	-				-0.3
1,445,342	+				-0.4
1,445,342	+				-0.9
1,445,390	-		Synpcc7942_1395	0.20	-2.2
1,445,390	-		Synpcc7942_1395	0.20	-0.2
1,445,403	-		Synpcc7942_1395	0.23	+0.6
1,445,423	-		Synpcc7942_1395	0.28	-0.5
1,445,434	+		Synpcc7942_1395	0.30	+0.4
1,445,444	-		Synpcc7942_1395	0.33	+0.0
1,445,444	-		Synpcc7942_1395	0.33	+0.2
1,445,444	-		Synpcc7942_1395	0.33	-0.1
1,445,473	+		Synpcc7942_1395	0.40	-0.3
1,445,508	+		Synpcc7942_1395	0.48	+0.3
1,445,522	+		Synpcc7942_1395	0.51	+2.6
1,445,527	+		Synpcc7942_1395	0.53	-1.3
1,445,527	+		Synpcc7942_1395	0.53	-1.0
1,445,529	+		Synpcc7942_1395	0.53	+1.0
1,445,574	+		Synpcc7942_1395	0.64	-0.6
1,445,594	-		Synpcc7942_1395	0.69	+0.6
1,445,601	-		Synpcc7942_1395	0.70	+0.0
1,445,621	+		Synpcc7942_1395	0.75	+2.6
1,445,630	+		Synpcc7942_1395	0.77	-1.0
1,445,630	+		Synpcc7942_1395	0.77	-0.7
1,445,638	-		Synpcc7942_1395	0.79	-0.6
1,445,638	-		Synpcc7942_1395	0.79	+1.6
1,445,647	+		Synpcc7942_1395	0.81	+0.9
1,445,672	+		Synpcc7942_1395	0.87	+0.2
1,445,680	-		Synpcc7942_1395	0.89	-1.5
1,445,684	+				-0.4
1,445,706	-				+0.2
1,445,711	-				+0.0
1,445,716	-				-0.2
1,445,716	-				-0.5
1,445,716	-				-2.7
1,445,716	-				-0.9
1,445,740	+				+0.3
1,445,740	+				-1.3
1,445,748	-				-0.1
1,445,749	-				-1.6
1,445,780	-		Synpcc7942_1396	0.14	-1.2
1,445,785	+		Synpcc7942_1396	0.16	-0.7
1,445,792	+		Synpcc7942_1396	0.19	-0.2
1,445,820	+		Synpcc7942_1396	0.30	-1.4
1,445,831	+		Synpcc7942_1396	0.34	-0.8
1,445,831	+		Synpcc7942_1396	0.34	+1.6
1,445,839	-		Synpcc7942_1396	0.37	+1.6
1,445,839	-		Synpcc7942_1396	0.37	+1.2
1,445,873	-		Synpcc7942_1396	0.50	-1.5
1,445,875	-		Synpcc7942_1396	0.51	-1.0
1,445,885	-		Synpcc7942_1396	0.55	-0.8
1,445,921	+		Synpcc7942_1396	0.69	-0.6
1,445,921	+		Synpcc7942_1396	0.69	-1.6
1,445,921	+		Synpcc7942_1396	0.69	-2.4
1,445,921	+		Synpcc7942_1396	0.69	-0.9
1,445,929	-		Synpcc7942_1396	0.72	-1.7
1,445,967	+		Synpcc7942_1396	0.87	+1.0
1,445,970	-		Synpcc7942_1396	0.88	-0.6
1,445,981	+				-1.4
1,445,994	+				-0.4
1,445,999	+				-0.9
1,446,026	+				+0.1
1,446,041	+				-1.2
1,446,041	+				+0.6
1,446,043	-				-1.6
1,446,049	+				-0.6
1,446,049	-				+0.6
1,446,049	-				-0.2
1,446,057	-				-0.2
1,446,110	-				-0.3
1,446,139	+				+0.6
1,446,147	-				-0.7
1,446,169	+				-0.5
1,446,169	+				+0.0
1,446,171	+				-1.3
1,446,171	+				-0.1
1,446,173	+				-0.7
1,446,179	-				+0.3
1,446,179	-				+0.6
1,446,179	-				+0.0
1,446,179	-				+0.6
1,446,216	+				+1.9
1,446,224	-				-0.5
1,446,224	-				-0.8
1,446,224	-				+0.3
1,446,224	-				+0.0
1,446,231	-				+0.0
1,446,238	-				+0.3
1,446,296	+				-1.6
1,446,298	+				+2.1
1,446,298	+				+0.6
1,446,306	-				+0.2
1,446,306	-				-0.2
1,446,333	-		Synpcc7942_1397	0.11	+1.6
1,446,333	-		Synpcc7942_1397	0.11	-0.1
1,446,346	+		Synpcc7942_1397	0.12	-0.9
1,446,368	-		Synpcc7942_1397	0.13	+0.9
1,446,400	-		Synpcc7942_1397	0.16	+0.8
1,446,422	-		Synpcc7942_1397	0.17	-0.7
1,446,439	-		Synpcc7942_1397	0.19	+0.4
1,446,499	-		Synpcc7942_1397	0.23	+1.0
1,446,702	-		Synpcc7942_1397	0.38	+0.6
1,446,702	-		Synpcc7942_1397	0.38	-0.7
1,446,702	-		Synpcc7942_1397	0.38	+1.3
1,446,753	-		Synpcc7942_1397	0.42	+0.3
1,446,753	-		Synpcc7942_1397	0.42	-1.8
1,446,776	+		Synpcc7942_1397	0.44	-0.7
1,446,776	+		Synpcc7942_1397	0.44	+0.3
1,446,776	+		Synpcc7942_1397	0.44	+0.6
1,446,776	+		Synpcc7942_1397	0.44	+1.2
1,446,819	+		Synpcc7942_1397	0.47	-0.1
1,446,880	+		Synpcc7942_1397	0.52	-0.7
1,446,880	+		Synpcc7942_1397	0.52	+0.3
1,446,883	-		Synpcc7942_1397	0.52	+0.9
1,446,888	-		Synpcc7942_1397	0.52	+2.1
1,446,888	-		Synpcc7942_1397	0.52	+0.9
1,446,888	-		Synpcc7942_1397	0.52	+1.3
1,446,888	-		Synpcc7942_1397	0.52	+0.3
1,446,888	-		Synpcc7942_1397	0.52	+1.0
1,446,927	-		Synpcc7942_1397	0.55	+0.8