Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1130

Experiment: 15:15 LD cycle bioreactor

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	15:15 LD cycle bioreactor
1,148,454	-				+0.0
1,148,454	-				-1.3
1,148,470	-				-1.0
1,148,521	-				+0.6
1,148,523	-				-0.4
1,148,587	-				-0.7
1,148,613	+				+1.0
1,148,623	-				+0.8
1,148,638	+		Synpcc7942_1129	0.12	-0.7
1,148,688	+		Synpcc7942_1129	0.17	+0.4
1,148,706	+		Synpcc7942_1129	0.20	+0.1
1,148,706	+		Synpcc7942_1129	0.20	-1.2
1,148,714	-		Synpcc7942_1129	0.20	-0.1
1,148,726	+		Synpcc7942_1129	0.22	-0.1
1,148,732	-		Synpcc7942_1129	0.23	-1.4
1,148,792	+		Synpcc7942_1129	0.30	+0.3
1,148,800	-		Synpcc7942_1129	0.31	+1.0
1,148,864	+		Synpcc7942_1129	0.38	+0.4
1,148,887	+		Synpcc7942_1129	0.41	-1.1
1,148,903	-		Synpcc7942_1129	0.43	+1.0
1,148,905	-		Synpcc7942_1129	0.43	+0.8
1,148,917	+		Synpcc7942_1129	0.44	-0.2
1,148,925	-		Synpcc7942_1129	0.45	-1.0
1,148,930	+				-1.6
1,148,939	+		Synpcc7942_1129	0.47	-0.4
1,148,941	+		Synpcc7942_1129	0.47	+0.2
1,148,949	+		Synpcc7942_1129	0.48	-0.8
1,148,959	-		Synpcc7942_1129	0.49	-0.9
1,148,974	-		Synpcc7942_1129	0.51	+1.6
1,148,981	-		Synpcc7942_1129	0.52	-0.3
1,148,990	+		Synpcc7942_1129	0.53	-0.6
1,148,998	-		Synpcc7942_1129	0.54	-0.3
1,149,011	+		Synpcc7942_1129	0.55	-0.1
1,149,038	+		Synpcc7942_1129	0.59	-1.7
1,149,038	+		Synpcc7942_1129	0.59	+0.4
1,149,039	+		Synpcc7942_1129	0.59	+0.6
1,149,051	-		Synpcc7942_1129	0.60	-0.5
1,149,060	+		Synpcc7942_1129	0.61	+0.2
1,149,076	-		Synpcc7942_1129	0.63	-1.3
1,149,085	-		Synpcc7942_1129	0.64	-0.8
1,149,092	+		Synpcc7942_1129	0.65	-0.4
1,149,092	+		Synpcc7942_1129	0.65	-0.4
1,149,101	-		Synpcc7942_1129	0.66	+1.9
1,149,101	-		Synpcc7942_1129	0.66	-0.3
1,149,101	-		Synpcc7942_1129	0.66	-1.5
1,149,125	+		Synpcc7942_1129	0.69	-1.3
1,149,128	-		Synpcc7942_1129	0.69	+0.6
1,149,130	+		Synpcc7942_1129	0.69	-1.7
1,149,133	-		Synpcc7942_1129	0.70	-1.4
1,149,133	-		Synpcc7942_1129	0.70	-1.8
1,149,133	-		Synpcc7942_1129	0.70	-0.7
1,149,133	-		Synpcc7942_1129	0.70	-0.4
1,149,138	-		Synpcc7942_1129	0.70	+0.3
1,149,163	-		Synpcc7942_1129	0.73	-0.1
1,149,167	-		Synpcc7942_1129	0.74	-0.5
1,149,187	+		Synpcc7942_1129	0.76	-0.9
1,149,187	+		Synpcc7942_1129	0.76	-1.7
1,149,195	-		Synpcc7942_1129	0.77	-0.1
1,149,249	+		Synpcc7942_1129	0.84	+0.4
1,149,256	-		Synpcc7942_1129	0.84	-1.2
1,149,281	-		Synpcc7942_1129	0.87	-0.2
1,149,283	+		Synpcc7942_1129	0.88	-0.8
1,149,295	+		Synpcc7942_1129	0.89	+0.3
1,149,302	-		Synpcc7942_1129	0.90	+0.1
1,149,303	-		Synpcc7942_1129	0.90	-0.7
1,149,303	-		Synpcc7942_1129	0.90	-1.2
1,149,317	+				-0.2
1,149,317	+				+0.6
1,149,322	+				+0.0
1,149,351	+				+2.1
1,149,383	+				+0.0
1,149,383	+				+0.5
1,149,383	+				+0.6
1,149,383	+				-1.2
1,149,391	-				+0.6
1,149,393	+				-0.5
1,149,426	-				-1.4
1,149,439	-				-3.2
1,149,468	+				+0.6
1,149,468	+				-2.0
1,149,468	+				-0.2
1,149,468	+				+1.0
1,149,468	+				+0.4
1,149,468	+				-1.2
1,149,476	-				+2.0
1,149,478	+				+0.1
1,149,499	+				+1.6
1,149,519	+				+0.0
1,149,533	+				-0.4
1,149,612	-				+0.0
1,149,660	+		Synpcc7942_1130	0.12	-0.8
1,149,661	+		Synpcc7942_1130	0.12	+0.8
1,149,661	+		Synpcc7942_1130	0.12	-1.7
1,149,661	+		Synpcc7942_1130	0.12	-2.0
1,149,661	-		Synpcc7942_1130	0.12	-0.3
1,149,665	+		Synpcc7942_1130	0.12	+0.6
1,149,693	-		Synpcc7942_1130	0.14	+1.6
1,149,703	-		Synpcc7942_1130	0.14	+1.6
1,149,712	-		Synpcc7942_1130	0.15	-1.2
1,149,727	-		Synpcc7942_1130	0.16	-1.1
1,149,727	-		Synpcc7942_1130	0.16	-0.8
1,149,727	-		Synpcc7942_1130	0.16	+0.2
1,149,755	-		Synpcc7942_1130	0.17	-0.1
1,149,760	+		Synpcc7942_1130	0.17	+0.5
1,149,780	+		Synpcc7942_1130	0.18	-1.0
1,149,781	+		Synpcc7942_1130	0.19	-0.6
1,149,783	-		Synpcc7942_1130	0.19	-1.7
1,149,791	+		Synpcc7942_1130	0.19	+1.1
1,149,798	-		Synpcc7942_1130	0.19	+0.0
1,149,804	+		Synpcc7942_1130	0.20	-0.4
1,149,804	+		Synpcc7942_1130	0.20	-0.6
1,149,804	+		Synpcc7942_1130	0.20	-0.4
1,149,804	+		Synpcc7942_1130	0.20	+2.6
1,149,804	+		Synpcc7942_1130	0.20	-0.1
1,149,804	+		Synpcc7942_1130	0.20	-2.6
1,149,804	+		Synpcc7942_1130	0.20	-0.2
1,149,812	-		Synpcc7942_1130	0.20	-0.9
1,149,812	-		Synpcc7942_1130	0.20	-1.0
1,149,812	-		Synpcc7942_1130	0.20	+1.6
1,149,812	-		Synpcc7942_1130	0.20	-0.4
1,149,812	-		Synpcc7942_1130	0.20	-0.7
1,149,815	+		Synpcc7942_1130	0.20	+0.6
1,149,839	+		Synpcc7942_1130	0.22	+0.9
1,149,849	+		Synpcc7942_1130	0.22	+0.6
1,149,857	-		Synpcc7942_1130	0.23	-0.5
1,149,876	-		Synpcc7942_1130	0.24	-0.7
1,149,888	+		Synpcc7942_1130	0.24	-1.2
1,149,888	+		Synpcc7942_1130	0.24	+0.0
1,149,888	+		Synpcc7942_1130	0.24	+0.0
1,149,896	-		Synpcc7942_1130	0.25	-1.0
1,149,896	-		Synpcc7942_1130	0.25	+0.6
1,149,896	-		Synpcc7942_1130	0.25	-0.5
1,149,898	+		Synpcc7942_1130	0.25	+0.0
1,149,931	+		Synpcc7942_1130	0.27	-0.6
1,149,975	+		Synpcc7942_1130	0.29	+0.2
1,150,006	-		Synpcc7942_1130	0.31	-0.7
1,150,030	-		Synpcc7942_1130	0.32	+1.6
1,150,030	-		Synpcc7942_1130	0.32	+0.6
1,150,032	+		Synpcc7942_1130	0.32	-1.2
1,150,041	-		Synpcc7942_1130	0.33	-1.0
1,150,043	-		Synpcc7942_1130	0.33	-0.4
1,150,056	+		Synpcc7942_1130	0.34	-2.0
1,150,064	-		Synpcc7942_1130	0.34	+1.6
1,150,064	-		Synpcc7942_1130	0.34	+0.0
1,150,093	-		Synpcc7942_1130	0.36	-0.8
1,150,098	-		Synpcc7942_1130	0.36	-1.6
1,150,118	-		Synpcc7942_1130	0.37	-1.8
1,150,121	+		Synpcc7942_1130	0.37	-0.7
1,150,140	-		Synpcc7942_1130	0.38	-1.0
1,150,159	-		Synpcc7942_1130	0.39	-0.7
1,150,159	-		Synpcc7942_1130	0.39	-0.7
1,150,161	+		Synpcc7942_1130	0.39	+0.0
1,150,169	+		Synpcc7942_1130	0.40	-1.4
1,150,179	+		Synpcc7942_1130	0.40	-0.3
1,150,187	+		Synpcc7942_1130	0.41	+1.6
1,150,187	+		Synpcc7942_1130	0.41	-1.0
1,150,187	-		Synpcc7942_1130	0.41	-0.4
1,150,187	-		Synpcc7942_1130	0.41	+0.6
1,150,187	-		Synpcc7942_1130	0.41	+0.3
1,150,187	-		Synpcc7942_1130	0.41	-2.6
1,150,204	-		Synpcc7942_1130	0.42	+0.0
1,150,242	-		Synpcc7942_1130	0.44	-0.2
1,150,267	-		Synpcc7942_1130	0.45	-0.2
1,150,300	-		Synpcc7942_1130	0.47	-1.6
1,150,304	+		Synpcc7942_1130	0.47	-2.3
1,150,307	-		Synpcc7942_1130	0.47	-0.2
1,150,312	-		Synpcc7942_1130	0.48	-1.8
1,150,312	-		Synpcc7942_1130	0.48	+0.0
1,150,319	+		Synpcc7942_1130	0.48	-2.5
1,150,339	-		Synpcc7942_1130	0.49	-0.9
1,150,368	+		Synpcc7942_1130	0.51	+0.1
1,150,414	+		Synpcc7942_1130	0.53	-0.4
1,150,414	+		Synpcc7942_1130	0.53	+0.6
1,150,414	+		Synpcc7942_1130	0.53	-2.2
1,150,415	-		Synpcc7942_1130	0.53	+1.6
1,150,422	-		Synpcc7942_1130	0.54	+0.6
1,150,424	+		Synpcc7942_1130	0.54	-0.4
1,150,442	+		Synpcc7942_1130	0.55	-1.9
1,150,501	+		Synpcc7942_1130	0.58	-1.6
1,150,509	-		Synpcc7942_1130	0.59	-0.6
1,150,518	-		Synpcc7942_1130	0.59	+0.6
1,150,523	+		Synpcc7942_1130	0.59	-0.3
1,150,531	-		Synpcc7942_1130	0.60	+0.6
1,150,535	-		Synpcc7942_1130	0.60	-1.9
1,150,535	-		Synpcc7942_1130	0.60	-2.1
1,150,544	+		Synpcc7942_1130	0.61	+1.6
1,150,552	+		Synpcc7942_1130	0.61	+1.0
1,150,559	-		Synpcc7942_1130	0.61	+1.0
1,150,602	+		Synpcc7942_1130	0.64	+0.3
1,150,619	+		Synpcc7942_1130	0.65	-0.3
1,150,619	-		Synpcc7942_1130	0.65	-0.9
1,150,629	-		Synpcc7942_1130	0.65	-2.1
1,150,651	+		Synpcc7942_1130	0.66	-1.3
1,150,671	-		Synpcc7942_1130	0.68	+0.3
1,150,711	+		Synpcc7942_1130	0.70	-0.7
1,150,719	+		Synpcc7942_1130	0.70	-1.6
1,150,719	+		Synpcc7942_1130	0.70	-0.7
1,150,719	+		Synpcc7942_1130	0.70	-1.0
1,150,727	-		Synpcc7942_1130	0.71	-1.8
1,150,727	-		Synpcc7942_1130	0.71	-2.1
1,150,732	+		Synpcc7942_1130	0.71	-1.7
1,150,739	-		Synpcc7942_1130	0.71	-0.4
1,150,741	+		Synpcc7942_1130	0.71	-1.0
1,150,753	+		Synpcc7942_1130	0.72	-1.6
1,150,755	+		Synpcc7942_1130	0.72	+1.6
1,150,758	-		Synpcc7942_1130	0.72	-0.7
1,150,760	+		Synpcc7942_1130	0.72	+0.6
1,150,773	-		Synpcc7942_1130	0.73	+1.6
1,150,773	-		Synpcc7942_1130	0.73	+0.6
1,150,811	-		Synpcc7942_1130	0.75	-0.5
1,150,816	-		Synpcc7942_1130	0.76	-0.8
1,150,816	-		Synpcc7942_1130	0.76	+2.2
1,150,837	+		Synpcc7942_1130	0.77	+0.6
1,150,837	+		Synpcc7942_1130	0.77	-0.4
1,150,844	+		Synpcc7942_1130	0.77	-1.2
1,150,844	-		Synpcc7942_1130	0.77	+1.6
1,150,852	-		Synpcc7942_1130	0.78	+0.0
1,150,852	-		Synpcc7942_1130	0.78	-0.4
1,150,853	+		Synpcc7942_1130	0.78	-0.5
1,150,853	+		Synpcc7942_1130	0.78	-0.2
1,150,857	+		Synpcc7942_1130	0.78	-1.2
1,150,858	+				-0.7
1,150,858	+		Synpcc7942_1130	0.78	-0.6
1,150,866	-		Synpcc7942_1130	0.78	-1.4
1,150,866	-		Synpcc7942_1130	0.78	+0.6
1,150,866	-		Synpcc7942_1130	0.78	+0.6
1,150,875	-		Synpcc7942_1130	0.79	-0.8
1,150,875	-		Synpcc7942_1130	0.79	+0.6
1,150,880	-		Synpcc7942_1130	0.79	+0.2
1,150,882	+		Synpcc7942_1130	0.79	-1.6
1,150,890	-		Synpcc7942_1130	0.80	-2.0
1,150,890	-		Synpcc7942_1130	0.80	-0.4
1,150,903	+		Synpcc7942_1130	0.80	+1.6
1,150,908	+		Synpcc7942_1130	0.81	-0.2
1,150,932	+		Synpcc7942_1130	0.82	-0.7
1,150,996	+		Synpcc7942_1130	0.85	-0.4
1,150,996	+		Synpcc7942_1130	0.85	+0.0
1,150,996	+		Synpcc7942_1130	0.85	-0.6
1,150,996	+		Synpcc7942_1130	0.85	+0.0
1,150,996	+		Synpcc7942_1130	0.85	+0.9
1,151,004	-		Synpcc7942_1130	0.86	-2.5
1,151,004	-		Synpcc7942_1130	0.86	-1.6
1,151,014	-		Synpcc7942_1130	0.86	+0.6
1,151,024	+		Synpcc7942_1130	0.87	-0.9
1,151,076	-		Synpcc7942_1130	0.90	-1.2
1,151,078	+				-2.0
1,151,078	+				+0.0
1,151,078	+				+0.2
1,151,081	-				-1.3
1,151,118	-				+0.0
1,151,122	-				-1.7
1,151,158	+				+0.6
1,151,159	+				-1.4
1,151,177	-				-1.0
1,151,261	+				+3.2
1,151,261	+				-0.2
1,151,294	+				+0.0
1,151,603	+				-0.4
1,151,761	-				+1.6
1,151,761	-				+0.2
1,151,864	-		Synpcc7942_1132	0.11	+1.6
1,151,870	+		Synpcc7942_1132	0.12	+0.1
1,151,909	-		Synpcc7942_1132	0.14	-0.5
1,151,923	-		Synpcc7942_1132	0.15	+0.9
1,151,931	+		Synpcc7942_1132	0.15	+0.4
1,151,972	+		Synpcc7942_1132	0.18	+0.3
1,151,980	-		Synpcc7942_1132	0.18	-0.9
1,151,980	-		Synpcc7942_1132	0.18	+0.6
1,152,029	-		Synpcc7942_1132	0.21	+0.2
1,152,085	+		Synpcc7942_1132	0.24	-1.3
1,152,103	-		Synpcc7942_1132	0.25	-0.8
1,152,139	+		Synpcc7942_1132	0.28	-0.6
1,152,202	-		Synpcc7942_1132	0.31	-0.8
1,152,202	-		Synpcc7942_1132	0.31	+0.6
1,152,259	+		Synpcc7942_1132	0.35	-0.7