Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1026

Experiment: 15:15 LD cycle bioreactor

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	15:15 LD cycle bioreactor
1,039,006	+				-0.8
1,039,006	+				-0.9
1,039,006	-				-0.9
1,039,019	-				-1.2
1,039,019	-				-0.7
1,039,059	+				-0.2
1,039,067	-				-0.2
1,039,067	-				-1.2
1,039,089	-				+0.3
1,039,096	-				-1.1
1,039,097	+				+0.4
1,039,113	+				+1.6
1,039,113	+				+0.3
1,039,113	+				-1.1
1,039,121	-				-1.0
1,039,121	-				-1.5
1,039,121	-				-0.1
1,039,126	-				+1.3
1,039,134	+				-1.7
1,039,142	-				-0.5
1,039,144	+				-1.2
1,039,154	-				+0.6
1,039,166	+				-1.0
1,039,206	+				-0.7
1,039,227	-		Synpcc7942_1025	0.13	+0.6
1,039,298	-		Synpcc7942_1025	0.28	-0.1
1,039,302	-		Synpcc7942_1025	0.28	-1.8
1,039,350	+		Synpcc7942_1025	0.39	-1.0
1,039,358	-		Synpcc7942_1025	0.40	+1.6
1,039,358	-		Synpcc7942_1025	0.40	-1.2
1,039,393	-		Synpcc7942_1025	0.48	-0.7
1,039,411	+		Synpcc7942_1025	0.52	+0.9
1,039,419	-				+0.0
1,039,421	+		Synpcc7942_1025	0.54	+0.0
1,039,421	+		Synpcc7942_1025	0.54	-1.7
1,039,423	-		Synpcc7942_1025	0.54	-1.4
1,039,429	-		Synpcc7942_1025	0.55	-1.0
1,039,436	+		Synpcc7942_1025	0.57	+0.0
1,039,445	+		Synpcc7942_1025	0.59	+1.6
1,039,451	-		Synpcc7942_1025	0.60	+0.5
1,039,453	+		Synpcc7942_1025	0.61	-0.3
1,039,488	+		Synpcc7942_1025	0.68	-0.7
1,039,510	+		Synpcc7942_1025	0.73	+0.6
1,039,536	+		Synpcc7942_1025	0.78	-0.5
1,039,544	-		Synpcc7942_1025	0.80	+0.6
1,039,606	-				-1.9
1,039,627	+				+0.0
1,039,632	+				+0.6
1,039,632	+				+1.6
1,039,640	-				+0.0
1,039,640	-				-1.3
1,039,640	-				+1.0
1,039,640	-				+1.0
1,039,640	-				-0.5
1,039,674	+				+0.9
1,039,682	+				+0.6
1,039,682	-				+1.0
1,039,682	-				+0.0
1,039,690	-				+0.0
1,039,690	-				+1.6
1,039,731	+				-0.1
1,039,731	+				+0.9
1,039,741	+				+0.6
1,039,741	+				-0.4
1,039,746	-				-1.0
1,039,752	+				-0.9
1,039,817	-				+1.0
1,039,996	+				+0.6
1,040,021	+				+0.6
1,040,029	-				-0.4
1,040,040	-				+3.2
1,040,048	+				+0.6
1,040,068	+				+1.6
1,040,108	-				+1.6
1,040,133	+				+0.2
1,040,156	-		Synpcc7942_1026	0.11	-1.4
1,040,168	-		Synpcc7942_1026	0.11	-0.7
1,040,168	-		Synpcc7942_1026	0.11	-1.2
1,040,170	+		Synpcc7942_1026	0.11	+1.6
1,040,170	+		Synpcc7942_1026	0.11	-3.1
1,040,212	+		Synpcc7942_1026	0.14	+0.4
1,040,217	+		Synpcc7942_1026	0.14	+1.6
1,040,217	+		Synpcc7942_1026	0.14	+0.0
1,040,225	-		Synpcc7942_1026	0.14	-0.2
1,040,225	-		Synpcc7942_1026	0.14	+0.3
1,040,273	-		Synpcc7942_1026	0.17	-1.7
1,040,280	+		Synpcc7942_1026	0.18	-1.0
1,040,345	+		Synpcc7942_1026	0.21	-2.0
1,040,345	+		Synpcc7942_1026	0.21	-1.5
1,040,378	+		Synpcc7942_1026	0.23	-0.4
1,040,383	+		Synpcc7942_1026	0.23	-0.9
1,040,383	+		Synpcc7942_1026	0.23	-2.5
1,040,383	+		Synpcc7942_1026	0.23	-1.0
1,040,391	-		Synpcc7942_1026	0.24	-0.7
1,040,391	-		Synpcc7942_1026	0.24	-1.0
1,040,391	-		Synpcc7942_1026	0.24	+0.0
1,040,391	-		Synpcc7942_1026	0.24	-1.1
1,040,391	-		Synpcc7942_1026	0.24	+0.7
1,040,391	-		Synpcc7942_1026	0.24	+0.0
1,040,407	+		Synpcc7942_1026	0.25	-0.6
1,040,432	+		Synpcc7942_1026	0.26	+1.6
1,040,440	-		Synpcc7942_1026	0.27	-1.0
1,040,443	-		Synpcc7942_1026	0.27	-1.4
1,040,469	+		Synpcc7942_1026	0.28	+0.3
1,040,469	+		Synpcc7942_1026	0.28	+0.0
1,040,469	+		Synpcc7942_1026	0.28	-0.7
1,040,469	+		Synpcc7942_1026	0.28	-2.0
1,040,477	-		Synpcc7942_1026	0.29	-0.5
1,040,477	-		Synpcc7942_1026	0.29	+0.5
1,040,477	-		Synpcc7942_1026	0.29	+1.6
1,040,477	-		Synpcc7942_1026	0.29	+1.2
1,040,477	-		Synpcc7942_1026	0.29	-1.7
1,040,477	-		Synpcc7942_1026	0.29	+0.6
1,040,477	-				-0.4
1,040,479	+		Synpcc7942_1026	0.29	-1.0
1,040,499	-		Synpcc7942_1026	0.30	-1.0
1,040,530	+		Synpcc7942_1026	0.32	-1.2
1,040,602	-		Synpcc7942_1026	0.36	-0.4
1,040,620	+		Synpcc7942_1026	0.37	+0.0
1,040,638	+				-1.0
1,040,678	+		Synpcc7942_1026	0.40	+1.4
1,040,678	+		Synpcc7942_1026	0.40	-1.5
1,040,679	+		Synpcc7942_1026	0.40	-0.0
1,040,679	+		Synpcc7942_1026	0.40	-0.7
1,040,679	+		Synpcc7942_1026	0.40	-1.2
1,040,679	+		Synpcc7942_1026	0.40	+0.3
1,040,679	+		Synpcc7942_1026	0.40	+0.0
1,040,680	+		Synpcc7942_1026	0.40	-1.0
1,040,680	+		Synpcc7942_1026	0.40	+0.2
1,040,686	-		Synpcc7942_1026	0.41	-1.1
1,040,692	+		Synpcc7942_1026	0.41	-1.0
1,040,696	-		Synpcc7942_1026	0.41	-1.4
1,040,708	+		Synpcc7942_1026	0.42	-1.2
1,040,807	-		Synpcc7942_1026	0.48	+0.6
1,040,884	+		Synpcc7942_1026	0.52	-0.4
1,040,884	-		Synpcc7942_1026	0.52	+0.0
1,040,893	+		Synpcc7942_1026	0.53	+0.0
1,040,925	+		Synpcc7942_1026	0.54	-1.1
1,040,933	-		Synpcc7942_1026	0.55	-1.4
1,040,933	-		Synpcc7942_1026	0.55	+0.6
1,040,951	+		Synpcc7942_1026	0.56	+0.6
1,040,998	+		Synpcc7942_1026	0.59	-1.5
1,041,009	+		Synpcc7942_1026	0.59	-0.7
1,041,024	+		Synpcc7942_1026	0.60	-0.1
1,041,024	+		Synpcc7942_1026	0.60	+0.3
1,041,027	-		Synpcc7942_1026	0.60	+0.6
1,041,030	-		Synpcc7942_1026	0.60	-0.5
1,041,056	+		Synpcc7942_1026	0.62	-0.6
1,041,058	+		Synpcc7942_1026	0.62	-1.4
1,041,132	+		Synpcc7942_1026	0.66	+0.2
1,041,135	-		Synpcc7942_1026	0.66	+1.4
1,041,158	+		Synpcc7942_1026	0.68	+0.6
1,041,177	-		Synpcc7942_1026	0.69	-0.8
1,041,178	-		Synpcc7942_1026	0.69	-0.4
1,041,251	+		Synpcc7942_1026	0.73	-2.0
1,041,251	-		Synpcc7942_1026	0.73	-0.1
1,041,257	-		Synpcc7942_1026	0.73	+1.0
1,041,257	-		Synpcc7942_1026	0.73	-1.0
1,041,258	-		Synpcc7942_1026	0.73	-0.5
1,041,260	+		Synpcc7942_1026	0.73	-1.5
1,041,268	-		Synpcc7942_1026	0.74	+0.6
1,041,268	-		Synpcc7942_1026	0.74	-0.4
1,041,268	-		Synpcc7942_1026	0.74	-1.0
1,041,289	+		Synpcc7942_1026	0.75	-1.0
1,041,302	-		Synpcc7942_1026	0.76	-0.8
1,041,318	-		Synpcc7942_1026	0.77	+0.0
1,041,318	-		Synpcc7942_1026	0.77	+0.6
1,041,345	+		Synpcc7942_1026	0.78	+0.0
1,041,345	-		Synpcc7942_1026	0.78	-0.2
1,041,346	-		Synpcc7942_1026	0.78	-0.7
1,041,351	+		Synpcc7942_1026	0.79	-1.1
1,041,351	+		Synpcc7942_1026	0.79	-1.5
1,041,354	-		Synpcc7942_1026	0.79	+1.0
1,041,365	+		Synpcc7942_1026	0.79	-1.2
1,041,366	-		Synpcc7942_1026	0.79	-2.0
1,041,373	-		Synpcc7942_1026	0.80	+0.0
1,041,373	-		Synpcc7942_1026	0.80	+1.0
1,041,373	-		Synpcc7942_1026	0.80	-1.5
1,041,377	+		Synpcc7942_1026	0.80	-0.9
1,041,404	-		Synpcc7942_1026	0.82	-1.8
1,041,415	-		Synpcc7942_1026	0.82	+1.2
1,041,425	-		Synpcc7942_1026	0.83	-1.3
1,041,433	+		Synpcc7942_1026	0.83	-1.4
1,041,434	+		Synpcc7942_1026	0.83	+0.0
1,041,438	+		Synpcc7942_1026	0.84	+1.0
1,041,441	-		Synpcc7942_1026	0.84	+0.6
1,041,441	-		Synpcc7942_1026	0.84	-1.7
1,041,445	+		Synpcc7942_1026	0.84	-0.5
1,041,448	-		Synpcc7942_1026	0.84	-0.7
1,041,458	-		Synpcc7942_1026	0.85	-0.6
1,041,459	+		Synpcc7942_1026	0.85	-2.1
1,041,472	+		Synpcc7942_1026	0.86	-0.9
1,041,472	-		Synpcc7942_1026	0.86	-2.2
1,041,472	-		Synpcc7942_1026	0.86	+0.3
1,041,503	+		Synpcc7942_1026	0.87	-1.4
1,041,510	+		Synpcc7942_1026	0.88	-1.2
1,041,511	-		Synpcc7942_1026	0.88	+0.0
1,041,511	-		Synpcc7942_1026	0.88	-1.7
1,041,511	-		Synpcc7942_1026	0.88	-1.0
1,041,511	-		Synpcc7942_1026	0.88	-0.1
1,041,511	-		Synpcc7942_1026	0.88	-1.0
1,041,546	-		Synpcc7942_1026	0.90	-0.4
1,041,554	-				+0.6
1,041,564	-				-0.7
1,041,580	+				-0.3
1,041,588	-				-0.7
1,041,588	-				-0.7
1,041,593	+				+1.0
1,041,610	+				-0.4
1,041,637	+				-1.9
1,041,637	+				-0.9
1,041,638	+				-1.4
1,041,645	-				+0.4
1,041,645	-				-1.0
1,041,646	+				+0.6
1,041,647	+				+0.2
1,041,647	+				+1.0
1,041,681	-				-1.0
1,041,682	+				+1.0
1,041,714	-				-2.0
1,041,726	-				-2.0
1,041,726	-				-1.0
1,041,740	-				+0.0
1,041,746	+				+0.9
1,041,756	-				+0.0
1,041,778	+				-0.4
1,041,778	+				-1.2
1,041,786	-				+0.8
1,041,788	+				+0.0
1,041,788	+				+0.2
1,041,788	+				+0.2
1,041,788	+				+0.3
1,041,789	+				+0.6
1,041,790	+				-0.2
1,041,790	+				+1.6
1,041,790	+				+0.1
1,041,792	-				+1.6
1,041,796	-				+1.9
1,041,796	-				-1.1
1,041,812	+				-1.3
1,041,812	+				+1.6
1,041,815	+				+0.3
1,041,820	-				-1.0
1,041,820	-				-1.4
1,041,820	-				+0.9
1,041,828	-				+2.1
1,041,841	-		Synpcc7942_1027	0.13	-0.8
1,041,854	+		Synpcc7942_1027	0.17	-2.4
1,041,860	+		Synpcc7942_1027	0.19	+0.4
1,041,860	+		Synpcc7942_1027	0.19	-0.0
1,041,860	+		Synpcc7942_1027	0.19	-0.6
1,041,862	-		Synpcc7942_1027	0.20	-0.2
1,041,865	+		Synpcc7942_1027	0.21	-1.2
1,041,921	+		Synpcc7942_1027	0.38	+1.6
1,041,924	-		Synpcc7942_1027	0.39	+1.6
1,041,924	-		Synpcc7942_1027	0.39	+0.9
1,041,929	-		Synpcc7942_1027	0.41	+0.5
1,041,929	-		Synpcc7942_1027	0.41	+0.7
1,041,929	-		Synpcc7942_1027	0.41	-0.1
1,041,969	-		Synpcc7942_1027	0.54	-0.3
1,041,996	-		Synpcc7942_1027	0.62	+0.6
1,042,003	+		Synpcc7942_1027	0.64	-0.5
1,042,043	-		Synpcc7942_1027	0.77	-0.2
1,042,079	+		Synpcc7942_1027	0.89	-0.4
1,042,079	+		Synpcc7942_1027	0.89	-1.0
1,042,081	+		Synpcc7942_1027	0.89	-1.2
1,042,087	-				-1.0
1,042,170	+				-0.4
1,042,180	-				+1.9
1,042,181	+				-2.3
1,042,181	+				+0.0
1,042,189	-				-0.7
1,042,189	-				-0.1
1,042,206	+				+0.6
1,042,211	-				-0.8
1,042,221	-				-0.1
1,042,230	-				-0.7
1,042,230	-				-0.7
1,042,265	-				-0.6
1,042,296	-				-1.4
1,042,296	-				+0.6
1,042,318	+				-1.0
1,042,319	+				-0.3
1,042,319	+				-0.6
1,042,378	-				+1.6
1,042,381	+				-1.2
1,042,381	+				-0.7
1,042,381	+				-0.4
1,042,381	+				+0.0
1,042,381	+				-2.1
1,042,381	+				-0.6
1,042,389	-				+0.6
1,042,389	-				-2.1
1,042,389	-				-1.1
1,042,389	-				-1.2
1,042,389	-				+0.0
1,042,440	-				+0.8
1,042,440	-				-1.8
1,042,445	-				+0.8
1,042,550	+		Synpcc7942_1028	0.17	-1.4
1,042,552	-		Synpcc7942_1028	0.18	-1.5
1,042,559	-		Synpcc7942_1028	0.18	-0.8
1,042,562	+		Synpcc7942_1028	0.19	-0.1
1,042,657	+		Synpcc7942_1028	0.29	-2.0
1,042,684	+		Synpcc7942_1028	0.31	+0.2
1,042,696	-		Synpcc7942_1028	0.33	+0.0
1,042,698	+		Synpcc7942_1028	0.33	+1.6
1,042,706	-		Synpcc7942_1028	0.34	+2.6
1,042,723	+		Synpcc7942_1028	0.35	-1.5