Experiment: 15:15 LD cycle bioreactor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0719 and Synpcc7942_0720 are separated by 219 nucleotides Synpcc7942_0720 and Synpcc7942_0721 are separated by 202 nucleotides Synpcc7942_0721 and Synpcc7942_0722 are separated by 60 nucleotides
Synpcc7942_0719: Synpcc7942_0719 - hypothetical protein, at 714,328 to 714,831
_0719
Synpcc7942_0720: Synpcc7942_0720 - hypothetical protein, at 715,051 to 715,389
_0720
Synpcc7942_0721: Synpcc7942_0721 - hypothetical protein, at 715,592 to 715,882
_0721
Synpcc7942_0722: Synpcc7942_0722 - hypothetical protein, at 715,943 to 717,025
_0722
Position (kb) 715
716 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 714.671 kb on + strand, within Synpcc7942_0719 at 714.718 kb on + strand, within Synpcc7942_0719 at 714.746 kb on + strand, within Synpcc7942_0719 at 714.762 kb on + strand, within Synpcc7942_0719 at 714.763 kb on + strand, within Synpcc7942_0719 at 714.763 kb on + strand, within Synpcc7942_0719 at 714.771 kb on - strand, within Synpcc7942_0719 at 714.771 kb on - strand, within Synpcc7942_0719 at 714.773 kb on + strand, within Synpcc7942_0719 at 714.778 kb on + strand, within Synpcc7942_0719 at 714.781 kb on - strand at 714.781 kb on - strand at 714.781 kb on - strand at 714.783 kb on + strand at 714.790 kb on + strand at 714.793 kb on - strand at 714.798 kb on - strand at 714.803 kb on - strand at 714.831 kb on + strand at 714.831 kb on + strand at 714.839 kb on - strand at 714.839 kb on - strand at 714.841 kb on + strand at 714.844 kb on + strand at 714.849 kb on + strand at 714.880 kb on - strand at 714.880 kb on - strand at 714.882 kb on + strand at 714.889 kb on - strand at 714.904 kb on + strand at 714.910 kb on + strand at 714.912 kb on - strand at 714.912 kb on - strand at 714.915 kb on + strand at 714.918 kb on - strand at 714.923 kb on - strand at 714.923 kb on - strand at 714.923 kb on - strand at 714.923 kb on - strand at 714.925 kb on + strand at 714.930 kb on + strand at 714.933 kb on - strand at 714.938 kb on - strand at 714.948 kb on - strand at 714.977 kb on - strand at 714.979 kb on - strand at 714.995 kb on - strand at 715.006 kb on + strand at 715.007 kb on + strand at 715.018 kb on + strand at 715.040 kb on - strand at 715.056 kb on + strand at 715.064 kb on - strand at 715.064 kb on - strand at 715.068 kb on + strand at 715.125 kb on + strand, within Synpcc7942_0720 at 715.194 kb on + strand, within Synpcc7942_0720 at 715.196 kb on - strand at 715.202 kb on - strand, within Synpcc7942_0720 at 715.257 kb on + strand, within Synpcc7942_0720 at 715.257 kb on + strand, within Synpcc7942_0720 at 715.274 kb on + strand, within Synpcc7942_0720 at 715.284 kb on + strand, within Synpcc7942_0720 at 715.284 kb on + strand, within Synpcc7942_0720 at 715.384 kb on + strand at 715.392 kb on - strand at 715.392 kb on - strand at 715.392 kb on - strand at 715.392 kb on - strand at 715.401 kb on + strand at 715.401 kb on + strand at 715.431 kb on + strand at 715.442 kb on + strand at 715.442 kb on + strand at 715.449 kb on + strand at 715.449 kb on + strand at 715.457 kb on - strand at 715.464 kb on + strand at 715.464 kb on + strand at 715.467 kb on - strand at 715.470 kb on + strand at 715.472 kb on - strand at 715.495 kb on - strand at 715.544 kb on - strand at 715.571 kb on + strand at 715.598 kb on - strand at 715.603 kb on - strand at 715.607 kb on + strand at 715.607 kb on + strand at 715.615 kb on - strand at 715.630 kb on - strand, within Synpcc7942_0721 at 715.630 kb on - strand, within Synpcc7942_0721 at 715.630 kb on - strand, within Synpcc7942_0721 at 715.635 kb on + strand, within Synpcc7942_0721 at 715.668 kb on + strand, within Synpcc7942_0721 at 715.679 kb on - strand, within Synpcc7942_0721 at 715.681 kb on - strand, within Synpcc7942_0721 at 715.686 kb on - strand, within Synpcc7942_0721 at 715.689 kb on + strand, within Synpcc7942_0721 at 715.689 kb on + strand, within Synpcc7942_0721 at 715.723 kb on + strand, within Synpcc7942_0721 at 715.725 kb on - strand, within Synpcc7942_0721 at 715.801 kb on + strand, within Synpcc7942_0721 at 715.806 kb on + strand, within Synpcc7942_0721 at 715.806 kb on + strand, within Synpcc7942_0721 at 715.815 kb on + strand, within Synpcc7942_0721 at 715.829 kb on + strand, within Synpcc7942_0721 at 715.943 kb on - strand at 715.943 kb on - strand at 715.943 kb on - strand at 715.969 kb on + strand at 715.999 kb on + strand at 716.004 kb on + strand at 716.004 kb on + strand at 716.011 kb on - strand at 716.071 kb on + strand, within Synpcc7942_0722 at 716.082 kb on + strand, within Synpcc7942_0722 at 716.082 kb on + strand, within Synpcc7942_0722 at 716.089 kb on - strand, within Synpcc7942_0722 at 716.089 kb on - strand, within Synpcc7942_0722 at 716.089 kb on - strand, within Synpcc7942_0722 at 716.090 kb on - strand, within Synpcc7942_0722 at 716.090 kb on - strand, within Synpcc7942_0722 at 716.101 kb on + strand, within Synpcc7942_0722 at 716.109 kb on - strand, within Synpcc7942_0722 at 716.109 kb on - strand, within Synpcc7942_0722 at 716.116 kb on + strand, within Synpcc7942_0722 at 716.124 kb on - strand, within Synpcc7942_0722 at 716.149 kb on - strand, within Synpcc7942_0722 at 716.151 kb on + strand, within Synpcc7942_0722 at 716.151 kb on + strand, within Synpcc7942_0722 at 716.159 kb on - strand, within Synpcc7942_0722 at 716.184 kb on - strand, within Synpcc7942_0722 at 716.220 kb on + strand, within Synpcc7942_0722 at 716.220 kb on + strand, within Synpcc7942_0722 at 716.221 kb on + strand, within Synpcc7942_0722 at 716.230 kb on + strand, within Synpcc7942_0722 at 716.236 kb on + strand, within Synpcc7942_0722 at 716.284 kb on + strand, within Synpcc7942_0722 at 716.289 kb on + strand at 716.301 kb on + strand, within Synpcc7942_0722 at 716.309 kb on - strand, within Synpcc7942_0722 at 716.309 kb on - strand, within Synpcc7942_0722 at 716.309 kb on - strand, within Synpcc7942_0722 at 716.309 kb on - strand, within Synpcc7942_0722 at 716.341 kb on + strand, within Synpcc7942_0722 at 716.356 kb on + strand, within Synpcc7942_0722 at 716.356 kb on + strand, within Synpcc7942_0722 at 716.358 kb on + strand, within Synpcc7942_0722 at 716.374 kb on - strand, within Synpcc7942_0722 at 716.378 kb on + strand, within Synpcc7942_0722 at 716.378 kb on - strand, within Synpcc7942_0722 at 716.386 kb on - strand, within Synpcc7942_0722 at 716.387 kb on - strand, within Synpcc7942_0722 at 716.394 kb on - strand, within Synpcc7942_0722 at 716.397 kb on - strand, within Synpcc7942_0722 at 716.421 kb on - strand, within Synpcc7942_0722 at 716.421 kb on - strand at 716.430 kb on - strand at 716.448 kb on + strand, within Synpcc7942_0722 at 716.473 kb on - strand, within Synpcc7942_0722 at 716.475 kb on + strand, within Synpcc7942_0722 at 716.480 kb on + strand, within Synpcc7942_0722 at 716.480 kb on + strand, within Synpcc7942_0722 at 716.483 kb on - strand, within Synpcc7942_0722 at 716.532 kb on + strand, within Synpcc7942_0722 at 716.532 kb on + strand, within Synpcc7942_0722 at 716.532 kb on + strand at 716.532 kb on + strand, within Synpcc7942_0722 at 716.545 kb on - strand, within Synpcc7942_0722 at 716.566 kb on + strand, within Synpcc7942_0722 at 716.566 kb on + strand, within Synpcc7942_0722 at 716.566 kb on + strand, within Synpcc7942_0722 at 716.566 kb on + strand, within Synpcc7942_0722 at 716.566 kb on + strand, within Synpcc7942_0722 at 716.574 kb on - strand, within Synpcc7942_0722 at 716.574 kb on - strand, within Synpcc7942_0722 at 716.574 kb on - strand, within Synpcc7942_0722 at 716.583 kb on + strand, within Synpcc7942_0722 at 716.597 kb on - strand, within Synpcc7942_0722 at 716.607 kb on - strand, within Synpcc7942_0722 at 716.616 kb on + strand, within Synpcc7942_0722 at 716.635 kb on - strand, within Synpcc7942_0722 at 716.677 kb on - strand, within Synpcc7942_0722 at 716.687 kb on - strand, within Synpcc7942_0722 at 716.702 kb on - strand, within Synpcc7942_0722 at 716.707 kb on - strand, within Synpcc7942_0722 at 716.722 kb on - strand, within Synpcc7942_0722 at 716.729 kb on - strand, within Synpcc7942_0722 at 716.729 kb on - strand, within Synpcc7942_0722 at 716.764 kb on - strand, within Synpcc7942_0722 at 716.800 kb on + strand, within Synpcc7942_0722 at 716.808 kb on - strand, within Synpcc7942_0722 at 716.810 kb on - strand, within Synpcc7942_0722 at 716.823 kb on - strand, within Synpcc7942_0722 at 716.836 kb on + strand, within Synpcc7942_0722 at 716.854 kb on + strand, within Synpcc7942_0722 at 716.860 kb on + strand, within Synpcc7942_0722 at 716.860 kb on + strand, within Synpcc7942_0722 at 716.860 kb on + strand, within Synpcc7942_0722 at 716.868 kb on - strand, within Synpcc7942_0722 at 716.879 kb on - strand, within Synpcc7942_0722
Per-strain Table
Position Strand Gene LocusTag Fraction 15:15 LD cycle bioreactor remove 714,671 + Synpcc7942_0719 0.68 -0.3 714,718 + Synpcc7942_0719 0.77 -0.7 714,746 + Synpcc7942_0719 0.83 -1.5 714,762 + Synpcc7942_0719 0.86 +0.1 714,763 + Synpcc7942_0719 0.86 -1.9 714,763 + Synpcc7942_0719 0.86 +1.3 714,771 - Synpcc7942_0719 0.88 +0.7 714,771 - Synpcc7942_0719 0.88 -1.0 714,773 + Synpcc7942_0719 0.88 +0.1 714,778 + Synpcc7942_0719 0.89 -0.1 714,781 - +0.7 714,781 - -0.1 714,781 - -0.6 714,783 + -1.9 714,790 + -0.6 714,793 - -0.5 714,798 - +1.6 714,803 - +0.1 714,831 + +0.1 714,831 + -1.5 714,839 - -1.7 714,839 - +0.1 714,841 + +0.4 714,844 + -0.2 714,849 + +0.1 714,880 - +1.2 714,880 - -1.9 714,882 + -0.3 714,889 - +0.1 714,904 + -0.2 714,910 + +0.1 714,912 - -1.1 714,912 - +0.5 714,915 + -0.7 714,918 - -1.5 714,923 - +1.6 714,923 - +1.9 714,923 - +1.6 714,923 - -0.6 714,925 + +0.5 714,930 + +1.9 714,933 - -0.4 714,938 - +0.1 714,948 - +1.1 714,977 - -0.7 714,979 - +0.2 714,995 - +0.8 715,006 + -1.0 715,007 + +0.3 715,018 + -1.2 715,040 - -0.8 715,056 + +0.1 715,064 - -0.1 715,064 - +0.2 715,068 + -3.1 715,125 + Synpcc7942_0720 0.22 -1.2 715,194 + Synpcc7942_0720 0.42 -0.4 715,196 - -2.2 715,202 - Synpcc7942_0720 0.45 -0.4 715,257 + Synpcc7942_0720 0.61 +0.3 715,257 + Synpcc7942_0720 0.61 -0.7 715,274 + Synpcc7942_0720 0.66 -0.7 715,284 + Synpcc7942_0720 0.69 -0.5 715,284 + Synpcc7942_0720 0.69 -0.9 715,384 + -2.0 715,392 - +0.1 715,392 - +3.2 715,392 - -0.6 715,392 - -1.1 715,401 + -1.2 715,401 + -0.6 715,431 + +0.5 715,442 + -0.7 715,442 + +0.5 715,449 + -1.5 715,449 + -0.2 715,457 - -0.5 715,464 + +0.9 715,464 + -0.9 715,467 - -1.8 715,470 + +0.1 715,472 - +0.2 715,495 - +0.6 715,544 - +0.1 715,571 + -0.4 715,598 - +1.9 715,603 - +0.9 715,607 + -0.5 715,607 + +1.6 715,615 - +0.1 715,630 - Synpcc7942_0721 0.13 -0.7 715,630 - Synpcc7942_0721 0.13 -1.2 715,630 - Synpcc7942_0721 0.13 -0.1 715,635 + Synpcc7942_0721 0.15 -0.7 715,668 + Synpcc7942_0721 0.26 +0.6 715,679 - Synpcc7942_0721 0.30 +0.1 715,681 - Synpcc7942_0721 0.31 -0.4 715,686 - Synpcc7942_0721 0.32 +1.6 715,689 + Synpcc7942_0721 0.33 -1.2 715,689 + Synpcc7942_0721 0.33 -2.1 715,723 + Synpcc7942_0721 0.45 -2.1 715,725 - Synpcc7942_0721 0.46 -1.1 715,801 + Synpcc7942_0721 0.72 -0.9 715,806 + Synpcc7942_0721 0.74 -0.8 715,806 + Synpcc7942_0721 0.74 +1.6 715,815 + Synpcc7942_0721 0.77 -2.0 715,829 + Synpcc7942_0721 0.81 -0.1 715,943 - -0.9 715,943 - +0.1 715,943 - -0.2 715,969 + -1.2 715,999 + -0.0 716,004 + -0.4 716,004 + -0.8 716,011 - +0.1 716,071 + Synpcc7942_0722 0.12 +2.2 716,082 + Synpcc7942_0722 0.13 -0.9 716,082 + Synpcc7942_0722 0.13 -1.2 716,089 - Synpcc7942_0722 0.13 -0.4 716,089 - Synpcc7942_0722 0.13 +1.1 716,089 - Synpcc7942_0722 0.13 -0.1 716,090 - Synpcc7942_0722 0.14 -0.7 716,090 - Synpcc7942_0722 0.14 +0.1 716,101 + Synpcc7942_0722 0.15 -1.1 716,109 - Synpcc7942_0722 0.15 +1.6 716,109 - Synpcc7942_0722 0.15 +0.6 716,116 + Synpcc7942_0722 0.16 +0.1 716,124 - Synpcc7942_0722 0.17 -0.1 716,149 - Synpcc7942_0722 0.19 +1.0 716,151 + Synpcc7942_0722 0.19 -0.1 716,151 + Synpcc7942_0722 0.19 -1.2 716,159 - Synpcc7942_0722 0.20 -0.5 716,184 - Synpcc7942_0722 0.22 +0.6 716,220 + Synpcc7942_0722 0.26 -0.6 716,220 + Synpcc7942_0722 0.26 -0.2 716,221 + Synpcc7942_0722 0.26 +0.1 716,230 + Synpcc7942_0722 0.27 +1.6 716,236 + Synpcc7942_0722 0.27 -1.4 716,284 + Synpcc7942_0722 0.31 +3.0 716,289 + -0.4 716,301 + Synpcc7942_0722 0.33 +0.6 716,309 - Synpcc7942_0722 0.34 +1.1 716,309 - Synpcc7942_0722 0.34 +0.2 716,309 - Synpcc7942_0722 0.34 -0.1 716,309 - Synpcc7942_0722 0.34 +0.6 716,341 + Synpcc7942_0722 0.37 +1.1 716,356 + Synpcc7942_0722 0.38 -0.2 716,356 + Synpcc7942_0722 0.38 +0.2 716,358 + Synpcc7942_0722 0.38 -0.9 716,374 - Synpcc7942_0722 0.40 -0.7 716,378 + Synpcc7942_0722 0.40 -0.0 716,378 - Synpcc7942_0722 0.40 -0.6 716,386 - Synpcc7942_0722 0.41 -0.0 716,387 - Synpcc7942_0722 0.41 -0.8 716,394 - Synpcc7942_0722 0.42 +0.3 716,397 - Synpcc7942_0722 0.42 -0.5 716,421 - Synpcc7942_0722 0.44 -0.4 716,421 - -1.4 716,430 - -2.8 716,448 + Synpcc7942_0722 0.47 +0.3 716,473 - Synpcc7942_0722 0.49 -1.2 716,475 + Synpcc7942_0722 0.49 +1.1 716,480 + Synpcc7942_0722 0.50 +0.1 716,480 + Synpcc7942_0722 0.50 -0.9 716,483 - Synpcc7942_0722 0.50 -1.4 716,532 + Synpcc7942_0722 0.54 -0.1 716,532 + Synpcc7942_0722 0.54 -0.3 716,532 + -1.7 716,532 + Synpcc7942_0722 0.54 -0.1 716,545 - Synpcc7942_0722 0.56 +0.1 716,566 + Synpcc7942_0722 0.58 +1.6 716,566 + Synpcc7942_0722 0.58 -0.9 716,566 + Synpcc7942_0722 0.58 -0.4 716,566 + Synpcc7942_0722 0.58 -1.8 716,566 + Synpcc7942_0722 0.58 -0.1 716,574 - Synpcc7942_0722 0.58 +0.1 716,574 - Synpcc7942_0722 0.58 -1.2 716,574 - Synpcc7942_0722 0.58 +0.1 716,583 + Synpcc7942_0722 0.59 -0.6 716,597 - Synpcc7942_0722 0.60 +0.1 716,607 - Synpcc7942_0722 0.61 +0.5 716,616 + Synpcc7942_0722 0.62 -0.4 716,635 - Synpcc7942_0722 0.64 -1.5 716,677 - Synpcc7942_0722 0.68 -0.2 716,687 - Synpcc7942_0722 0.69 +0.1 716,702 - Synpcc7942_0722 0.70 +0.8 716,707 - Synpcc7942_0722 0.71 +1.6 716,722 - Synpcc7942_0722 0.72 -2.1 716,729 - Synpcc7942_0722 0.73 -0.5 716,729 - Synpcc7942_0722 0.73 -0.8 716,764 - Synpcc7942_0722 0.76 -0.4 716,800 + Synpcc7942_0722 0.79 +0.9 716,808 - Synpcc7942_0722 0.80 -1.0 716,810 - Synpcc7942_0722 0.80 -1.1 716,823 - Synpcc7942_0722 0.81 +1.9 716,836 + Synpcc7942_0722 0.82 +0.4 716,854 + Synpcc7942_0722 0.84 -0.5 716,860 + Synpcc7942_0722 0.85 +0.6 716,860 + Synpcc7942_0722 0.85 +0.9 716,860 + Synpcc7942_0722 0.85 +0.1 716,868 - Synpcc7942_0722 0.85 +0.4 716,879 - Synpcc7942_0722 0.86 -0.3
Or see this region's nucleotide sequence