Experiment: 15:15 LD cycle bioreactor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0687 and Synpcc7942_0688 overlap by 26 nucleotides Synpcc7942_0688 and Synpcc7942_0689 overlap by 10 nucleotides Synpcc7942_0689 and clpS overlap by 17 nucleotides
Synpcc7942_0687: Synpcc7942_0687 - hypothetical protein, at 682,128 to 683,747
_0687
Synpcc7942_0688: Synpcc7942_0688 - transcriptional regulator, ArsR family, at 683,722 to 684,060
_0688
Synpcc7942_0689: Synpcc7942_0689 - hypothetical protein, at 684,051 to 684,884
_0689
Synpcc7942_0690: clpS - ATP-dependent Clp protease adaptor protein ClpS, at 684,868 to 685,155
clpS
Position (kb) 683
684
685 Strain fitness (log2 ratio) -2
-1
0
1
2 at 682.735 kb on + strand, within Synpcc7942_0687 at 682.743 kb on - strand, within Synpcc7942_0687 at 682.743 kb on - strand, within Synpcc7942_0687 at 682.743 kb on - strand, within Synpcc7942_0687 at 682.753 kb on - strand, within Synpcc7942_0687 at 682.754 kb on + strand, within Synpcc7942_0687 at 682.771 kb on + strand, within Synpcc7942_0687 at 682.787 kb on + strand, within Synpcc7942_0687 at 682.789 kb on - strand, within Synpcc7942_0687 at 682.795 kb on - strand, within Synpcc7942_0687 at 682.803 kb on + strand, within Synpcc7942_0687 at 682.825 kb on + strand, within Synpcc7942_0687 at 682.830 kb on + strand, within Synpcc7942_0687 at 682.838 kb on - strand, within Synpcc7942_0687 at 682.916 kb on + strand, within Synpcc7942_0687 at 682.916 kb on + strand, within Synpcc7942_0687 at 682.922 kb on - strand, within Synpcc7942_0687 at 682.924 kb on - strand, within Synpcc7942_0687 at 682.924 kb on - strand, within Synpcc7942_0687 at 682.924 kb on - strand, within Synpcc7942_0687 at 683.097 kb on + strand, within Synpcc7942_0687 at 683.105 kb on + strand, within Synpcc7942_0687 at 683.116 kb on - strand, within Synpcc7942_0687 at 683.116 kb on - strand, within Synpcc7942_0687 at 683.121 kb on - strand, within Synpcc7942_0687 at 683.189 kb on + strand, within Synpcc7942_0687 at 683.236 kb on + strand, within Synpcc7942_0687 at 683.237 kb on + strand, within Synpcc7942_0687 at 683.315 kb on + strand, within Synpcc7942_0687 at 683.426 kb on - strand, within Synpcc7942_0687 at 683.455 kb on + strand, within Synpcc7942_0687 at 683.460 kb on - strand, within Synpcc7942_0687 at 683.473 kb on - strand, within Synpcc7942_0687 at 683.522 kb on + strand, within Synpcc7942_0687 at 683.527 kb on + strand, within Synpcc7942_0687 at 683.535 kb on - strand, within Synpcc7942_0687 at 683.551 kb on + strand, within Synpcc7942_0687 at 683.602 kb on - strand at 683.654 kb on + strand at 683.661 kb on - strand at 683.663 kb on + strand at 683.665 kb on + strand at 683.671 kb on + strand at 683.673 kb on - strand at 683.686 kb on + strand at 683.730 kb on + strand at 683.798 kb on - strand, within Synpcc7942_0688 at 683.827 kb on + strand, within Synpcc7942_0688 at 683.845 kb on - strand, within Synpcc7942_0688 at 683.852 kb on + strand, within Synpcc7942_0688 at 683.886 kb on + strand, within Synpcc7942_0688 at 683.897 kb on + strand, within Synpcc7942_0688 at 683.897 kb on + strand, within Synpcc7942_0688 at 683.897 kb on + strand, within Synpcc7942_0688 at 683.923 kb on - strand, within Synpcc7942_0688 at 683.926 kb on + strand, within Synpcc7942_0688 at 683.940 kb on - strand, within Synpcc7942_0688 at 683.944 kb on + strand, within Synpcc7942_0688 at 683.975 kb on + strand, within Synpcc7942_0688 at 683.983 kb on - strand, within Synpcc7942_0688 at 683.983 kb on - strand, within Synpcc7942_0688 at 683.983 kb on - strand, within Synpcc7942_0688 at 683.983 kb on - strand, within Synpcc7942_0688 at 684.001 kb on - strand, within Synpcc7942_0688 at 684.020 kb on + strand, within Synpcc7942_0688 at 684.024 kb on + strand, within Synpcc7942_0688 at 684.028 kb on - strand at 684.103 kb on - strand at 684.103 kb on - strand at 684.103 kb on - strand at 684.103 kb on - strand at 684.108 kb on - strand at 684.108 kb on - strand at 684.844 kb on + strand at 684.844 kb on + strand at 684.852 kb on - strand at 684.852 kb on - strand at 684.852 kb on - strand at 684.855 kb on - strand at 684.879 kb on + strand at 684.887 kb on - strand at 684.887 kb on - strand at 684.887 kb on - strand at 684.887 kb on - strand at 684.887 kb on - strand at 684.895 kb on - strand at 684.905 kb on - strand, within clpS at 684.954 kb on + strand, within clpS at 684.994 kb on + strand, within clpS at 685.001 kb on + strand, within clpS at 685.020 kb on - strand, within clpS at 685.028 kb on + strand, within clpS at 685.036 kb on - strand, within clpS at 685.041 kb on - strand, within clpS at 685.049 kb on + strand, within clpS
Per-strain Table
Position Strand Gene LocusTag Fraction 15:15 LD cycle bioreactor remove 682,735 + Synpcc7942_0687 0.37 +1.7 682,743 - Synpcc7942_0687 0.38 +0.7 682,743 - Synpcc7942_0687 0.38 -0.1 682,743 - Synpcc7942_0687 0.38 -0.4 682,753 - Synpcc7942_0687 0.39 +0.1 682,754 + Synpcc7942_0687 0.39 -0.0 682,771 + Synpcc7942_0687 0.40 +1.7 682,787 + Synpcc7942_0687 0.41 -0.7 682,789 - Synpcc7942_0687 0.41 +0.1 682,795 - Synpcc7942_0687 0.41 +0.1 682,803 + Synpcc7942_0687 0.42 +0.1 682,825 + Synpcc7942_0687 0.43 +0.1 682,830 + Synpcc7942_0687 0.43 +0.8 682,838 - Synpcc7942_0687 0.44 -0.5 682,916 + Synpcc7942_0687 0.49 +0.1 682,916 + Synpcc7942_0687 0.49 +1.2 682,922 - Synpcc7942_0687 0.49 +0.9 682,924 - Synpcc7942_0687 0.49 -1.5 682,924 - Synpcc7942_0687 0.49 +0.1 682,924 - Synpcc7942_0687 0.49 -1.1 683,097 + Synpcc7942_0687 0.60 -1.0 683,105 + Synpcc7942_0687 0.60 +1.7 683,116 - Synpcc7942_0687 0.61 -0.3 683,116 - Synpcc7942_0687 0.61 +1.7 683,121 - Synpcc7942_0687 0.61 -0.2 683,189 + Synpcc7942_0687 0.65 +0.7 683,236 + Synpcc7942_0687 0.68 +0.9 683,237 + Synpcc7942_0687 0.68 +0.6 683,315 + Synpcc7942_0687 0.73 +0.3 683,426 - Synpcc7942_0687 0.80 +0.9 683,455 + Synpcc7942_0687 0.82 -0.1 683,460 - Synpcc7942_0687 0.82 -0.2 683,473 - Synpcc7942_0687 0.83 -0.5 683,522 + Synpcc7942_0687 0.86 -0.0 683,527 + Synpcc7942_0687 0.86 +1.7 683,535 - Synpcc7942_0687 0.87 +0.7 683,551 + Synpcc7942_0687 0.88 -0.6 683,602 - +0.7 683,654 + -0.9 683,661 - -0.2 683,663 + +1.2 683,665 + -0.1 683,671 + -0.8 683,673 - +0.1 683,686 + -0.6 683,730 + -0.7 683,798 - Synpcc7942_0688 0.22 -0.8 683,827 + Synpcc7942_0688 0.31 -0.7 683,845 - Synpcc7942_0688 0.36 -0.1 683,852 + Synpcc7942_0688 0.38 -1.2 683,886 + Synpcc7942_0688 0.48 +0.4 683,897 + Synpcc7942_0688 0.52 +0.4 683,897 + Synpcc7942_0688 0.52 +1.7 683,897 + Synpcc7942_0688 0.52 -0.7 683,923 - Synpcc7942_0688 0.59 -2.1 683,926 + Synpcc7942_0688 0.60 +0.5 683,940 - Synpcc7942_0688 0.64 -0.3 683,944 + Synpcc7942_0688 0.65 -0.5 683,975 + Synpcc7942_0688 0.75 +0.4 683,983 - Synpcc7942_0688 0.77 +0.1 683,983 - Synpcc7942_0688 0.77 -1.9 683,983 - Synpcc7942_0688 0.77 -1.3 683,983 - Synpcc7942_0688 0.77 -1.6 684,001 - Synpcc7942_0688 0.82 -1.3 684,020 + Synpcc7942_0688 0.88 -0.1 684,024 + Synpcc7942_0688 0.89 -0.3 684,028 - -1.1 684,103 - -0.3 684,103 - +0.9 684,103 - -0.2 684,103 - +0.5 684,108 - -1.4 684,108 - -0.5 684,844 + +0.1 684,844 + +0.4 684,852 - +0.1 684,852 - +0.7 684,852 - +0.7 684,855 - +1.7 684,879 + -0.4 684,887 - -0.8 684,887 - +1.9 684,887 - +0.5 684,887 - -0.3 684,887 - -0.7 684,895 - +1.6 684,905 - clpS Synpcc7942_0690 0.13 -0.1 684,954 + clpS Synpcc7942_0690 0.30 -0.1 684,994 + clpS Synpcc7942_0690 0.44 +0.7 685,001 + clpS Synpcc7942_0690 0.46 +0.8 685,020 - clpS Synpcc7942_0690 0.53 +2.3 685,028 + clpS Synpcc7942_0690 0.56 +1.1 685,036 - clpS Synpcc7942_0690 0.58 +0.7 685,041 - clpS Synpcc7942_0690 0.60 +0.5 685,049 + clpS Synpcc7942_0690 0.63 +0.3
Or see this region's nucleotide sequence