Experiment: 15:15 LD cycle bioreactor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0555 and srrB overlap by 4 nucleotides srrB and Synpcc7942_0557 are separated by 194 nucleotides Synpcc7942_0557 and Synpcc7942_0558 are separated by 77 nucleotides Synpcc7942_0558 and hslO are separated by 51 nucleotides
Synpcc7942_0555: Synpcc7942_0555 - zinc metalloprotease, at 537,790 to 538,509
_0555
Synpcc7942_0556: srrB - two component transcriptional regulator, winged helix family, at 538,506 to 539,219
srrB
Synpcc7942_0557: Synpcc7942_0557 - hypothetical protein, at 539,414 to 539,605
_0557
Synpcc7942_0558: Synpcc7942_0558 - hypothetical protein, at 539,683 to 540,297
_0558
Synpcc7942_0559: hslO - Hsp33-like chaperonin, at 540,349 to 541,242
hslO
Position (kb) 539
540 Strain fitness (log2 ratio) -2
-1
0
1
2 at 538.431 kb on - strand, within Synpcc7942_0555 at 538.504 kb on + strand at 538.504 kb on + strand at 538.576 kb on + strand at 538.597 kb on + strand, within srrB at 538.605 kb on - strand at 538.634 kb on - strand, within srrB at 538.667 kb on + strand, within srrB at 538.736 kb on - strand, within srrB at 538.772 kb on - strand, within srrB at 538.776 kb on + strand at 538.821 kb on + strand, within srrB at 538.824 kb on - strand, within srrB at 538.834 kb on - strand at 538.854 kb on + strand, within srrB at 538.886 kb on + strand, within srrB at 538.894 kb on - strand, within srrB at 538.918 kb on + strand, within srrB at 538.955 kb on - strand at 538.992 kb on + strand, within srrB at 539.027 kb on + strand, within srrB at 539.029 kb on + strand, within srrB at 539.051 kb on + strand, within srrB at 539.051 kb on + strand at 539.092 kb on + strand, within srrB at 539.096 kb on + strand, within srrB at 539.096 kb on + strand, within srrB at 539.105 kb on - strand, within srrB at 539.110 kb on - strand, within srrB at 539.133 kb on - strand, within srrB at 539.147 kb on - strand, within srrB at 539.184 kb on + strand at 539.184 kb on + strand at 539.194 kb on - strand at 539.216 kb on + strand at 539.224 kb on - strand at 539.229 kb on - strand at 539.229 kb on - strand at 539.239 kb on + strand at 539.241 kb on - strand at 539.244 kb on + strand at 539.244 kb on + strand at 539.244 kb on + strand at 539.250 kb on + strand at 539.252 kb on - strand at 539.253 kb on + strand at 539.253 kb on + strand at 539.254 kb on - strand at 539.271 kb on - strand at 539.271 kb on - strand at 539.273 kb on + strand at 539.288 kb on - strand at 539.309 kb on + strand at 539.318 kb on + strand at 539.374 kb on - strand at 539.377 kb on + strand at 539.391 kb on - strand at 539.401 kb on + strand at 539.409 kb on + strand at 539.409 kb on - strand at 539.409 kb on - strand at 539.409 kb on - strand at 539.414 kb on + strand at 539.459 kb on + strand, within Synpcc7942_0557 at 539.459 kb on + strand, within Synpcc7942_0557 at 539.467 kb on - strand, within Synpcc7942_0557 at 539.474 kb on - strand, within Synpcc7942_0557 at 539.626 kb on - strand at 539.638 kb on + strand at 539.646 kb on - strand at 539.670 kb on - strand at 539.670 kb on - strand at 539.714 kb on + strand at 539.742 kb on + strand at 539.801 kb on + strand, within Synpcc7942_0558 at 539.811 kb on - strand, within Synpcc7942_0558 at 539.835 kb on - strand, within Synpcc7942_0558 at 539.865 kb on + strand, within Synpcc7942_0558 at 539.960 kb on - strand, within Synpcc7942_0558 at 540.012 kb on + strand, within Synpcc7942_0558 at 540.059 kb on - strand, within Synpcc7942_0558 at 540.131 kb on + strand, within Synpcc7942_0558 at 540.225 kb on + strand, within Synpcc7942_0558 at 540.228 kb on - strand, within Synpcc7942_0558 at 540.230 kb on + strand, within Synpcc7942_0558 at 540.233 kb on - strand, within Synpcc7942_0558 at 540.270 kb on - strand at 540.296 kb on + strand at 540.304 kb on - strand at 540.304 kb on - strand at 540.323 kb on - strand at 540.346 kb on + strand at 540.416 kb on + strand at 540.443 kb on + strand, within hslO at 540.443 kb on - strand, within hslO at 540.450 kb on - strand, within hslO at 540.451 kb on - strand, within hslO at 540.469 kb on - strand, within hslO at 540.479 kb on - strand, within hslO at 540.479 kb on - strand, within hslO at 540.479 kb on - strand, within hslO at 540.497 kb on + strand, within hslO at 540.524 kb on - strand, within hslO at 540.585 kb on + strand, within hslO
Per-strain Table
Position Strand Gene LocusTag Fraction 15:15 LD cycle bioreactor remove 538,431 - Synpcc7942_0555 0.89 +0.0 538,504 + -1.4 538,504 + +1.6 538,576 + +0.3 538,597 + srrB Synpcc7942_0556 0.13 +0.6 538,605 - +2.6 538,634 - srrB Synpcc7942_0556 0.18 -0.4 538,667 + srrB Synpcc7942_0556 0.23 +1.6 538,736 - srrB Synpcc7942_0556 0.32 -0.2 538,772 - srrB Synpcc7942_0556 0.37 +1.6 538,776 + -0.3 538,821 + srrB Synpcc7942_0556 0.44 +1.0 538,824 - srrB Synpcc7942_0556 0.45 +0.6 538,834 - +0.9 538,854 + srrB Synpcc7942_0556 0.49 +1.5 538,886 + srrB Synpcc7942_0556 0.53 -1.4 538,894 - srrB Synpcc7942_0556 0.54 +1.0 538,918 + srrB Synpcc7942_0556 0.58 +0.3 538,955 - +0.0 538,992 + srrB Synpcc7942_0556 0.68 -1.6 539,027 + srrB Synpcc7942_0556 0.73 +1.2 539,029 + srrB Synpcc7942_0556 0.73 +0.6 539,051 + srrB Synpcc7942_0556 0.76 -0.4 539,051 + -0.4 539,092 + srrB Synpcc7942_0556 0.82 +0.3 539,096 + srrB Synpcc7942_0556 0.83 +2.4 539,096 + srrB Synpcc7942_0556 0.83 +0.8 539,105 - srrB Synpcc7942_0556 0.84 +1.5 539,110 - srrB Synpcc7942_0556 0.85 +0.3 539,133 - srrB Synpcc7942_0556 0.88 +1.0 539,147 - srrB Synpcc7942_0556 0.90 +2.4 539,184 + +1.6 539,184 + -0.1 539,194 - +1.3 539,216 + +0.2 539,224 - +0.3 539,229 - -0.3 539,229 - -0.4 539,239 + +0.9 539,241 - +0.8 539,244 + +0.6 539,244 + +0.4 539,244 + +0.2 539,250 + +0.6 539,252 - +1.6 539,253 + +0.3 539,253 + +1.6 539,254 - +1.4 539,271 - +0.9 539,271 - +1.0 539,273 + +1.2 539,288 - +0.8 539,309 + -0.4 539,318 + +1.0 539,374 - -2.3 539,377 + -0.2 539,391 - +0.3 539,401 + +1.6 539,409 + +0.3 539,409 - -1.2 539,409 - -0.6 539,409 - +0.6 539,414 + -0.1 539,459 + Synpcc7942_0557 0.23 -1.0 539,459 + Synpcc7942_0557 0.23 -0.3 539,467 - Synpcc7942_0557 0.28 -0.2 539,474 - Synpcc7942_0557 0.31 -1.3 539,626 - +1.6 539,638 + +1.6 539,646 - +1.0 539,670 - +1.6 539,670 - +1.6 539,714 + +1.6 539,742 + +0.0 539,801 + Synpcc7942_0558 0.19 -0.4 539,811 - Synpcc7942_0558 0.21 +1.6 539,835 - Synpcc7942_0558 0.25 -2.6 539,865 + Synpcc7942_0558 0.30 +0.6 539,960 - Synpcc7942_0558 0.45 -1.2 540,012 + Synpcc7942_0558 0.53 +1.6 540,059 - Synpcc7942_0558 0.61 -1.0 540,131 + Synpcc7942_0558 0.73 +1.6 540,225 + Synpcc7942_0558 0.88 +1.6 540,228 - Synpcc7942_0558 0.89 +1.6 540,230 + Synpcc7942_0558 0.89 +1.6 540,233 - Synpcc7942_0558 0.89 +0.6 540,270 - -1.3 540,296 + +2.6 540,304 - -1.2 540,304 - -1.2 540,323 - -0.7 540,346 + -0.7 540,416 + +0.0 540,443 + hslO Synpcc7942_0559 0.11 +0.6 540,443 - hslO Synpcc7942_0559 0.11 -1.0 540,450 - hslO Synpcc7942_0559 0.11 -0.2 540,451 - hslO Synpcc7942_0559 0.11 +0.8 540,469 - hslO Synpcc7942_0559 0.13 +0.7 540,479 - hslO Synpcc7942_0559 0.15 +0.0 540,479 - hslO Synpcc7942_0559 0.15 -0.2 540,479 - hslO Synpcc7942_0559 0.15 -1.2 540,497 + hslO Synpcc7942_0559 0.17 -1.0 540,524 - hslO Synpcc7942_0559 0.20 +0.7 540,585 + hslO Synpcc7942_0559 0.26 -1.7
Or see this region's nucleotide sequence