Experiment: 15:15 LD cycle bioreactor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0549 and Synpcc7942_0550 are separated by 8 nucleotides Synpcc7942_0550 and Synpcc7942_0551 are separated by 532 nucleotides Synpcc7942_0551 and nfrC are separated by 125 nucleotides
Synpcc7942_0549: Synpcc7942_0549 - hypothetical protein, at 531,884 to 532,645
_0549
Synpcc7942_0550: Synpcc7942_0550 - hypothetical protein, at 532,654 to 533,037
_0550
Synpcc7942_0551: Synpcc7942_0551 - hypothetical protein, at 533,570 to 533,941
_0551
Synpcc7942_0552: nfrC - UDP-N-acetylglucosamine 2-epimerase, at 534,067 to 535,185
nfrC
Position (kb) 533
534 Strain fitness (log2 ratio) -2
-1
0
1
2 at 532.611 kb on + strand at 532.611 kb on + strand at 532.655 kb on + strand at 532.737 kb on - strand, within Synpcc7942_0550 at 532.742 kb on + strand, within Synpcc7942_0550 at 532.742 kb on - strand, within Synpcc7942_0550 at 532.772 kb on - strand, within Synpcc7942_0550 at 532.792 kb on + strand, within Synpcc7942_0550 at 532.792 kb on + strand, within Synpcc7942_0550 at 532.828 kb on + strand, within Synpcc7942_0550 at 532.933 kb on - strand, within Synpcc7942_0550 at 532.941 kb on + strand, within Synpcc7942_0550 at 532.954 kb on + strand, within Synpcc7942_0550 at 532.954 kb on - strand, within Synpcc7942_0550 at 532.959 kb on + strand, within Synpcc7942_0550 at 532.959 kb on + strand, within Synpcc7942_0550 at 532.962 kb on - strand, within Synpcc7942_0550 at 532.972 kb on - strand, within Synpcc7942_0550 at 533.003 kb on + strand at 533.003 kb on + strand at 533.003 kb on + strand at 533.003 kb on + strand at 533.039 kb on - strand at 533.039 kb on - strand at 533.071 kb on + strand at 533.081 kb on + strand at 533.081 kb on + strand at 533.081 kb on + strand at 533.081 kb on + strand at 533.081 kb on + strand at 533.081 kb on + strand at 533.088 kb on + strand at 533.088 kb on + strand at 533.089 kb on - strand at 533.089 kb on - strand at 533.089 kb on - strand at 533.089 kb on - strand at 533.089 kb on - strand at 533.249 kb on + strand at 533.431 kb on + strand at 533.502 kb on + strand at 533.502 kb on + strand at 533.508 kb on - strand at 533.553 kb on + strand at 533.560 kb on + strand at 533.561 kb on - strand at 533.561 kb on - strand at 533.579 kb on + strand at 533.658 kb on - strand, within Synpcc7942_0551 at 533.666 kb on + strand, within Synpcc7942_0551 at 533.751 kb on - strand, within Synpcc7942_0551 at 533.756 kb on - strand, within Synpcc7942_0551 at 533.777 kb on - strand, within Synpcc7942_0551 at 533.815 kb on + strand, within Synpcc7942_0551 at 533.823 kb on - strand, within Synpcc7942_0551 at 533.833 kb on + strand, within Synpcc7942_0551 at 533.846 kb on + strand, within Synpcc7942_0551 at 533.846 kb on + strand, within Synpcc7942_0551 at 533.902 kb on - strand, within Synpcc7942_0551 at 533.915 kb on + strand at 533.923 kb on - strand at 533.937 kb on + strand at 534.061 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 15:15 LD cycle bioreactor remove 532,611 + +0.4 532,611 + +1.4 532,655 + +0.1 532,737 - Synpcc7942_0550 0.22 -0.4 532,742 + Synpcc7942_0550 0.23 +0.2 532,742 - Synpcc7942_0550 0.23 -0.9 532,772 - Synpcc7942_0550 0.31 -0.7 532,792 + Synpcc7942_0550 0.36 -0.8 532,792 + Synpcc7942_0550 0.36 +0.6 532,828 + Synpcc7942_0550 0.45 -0.7 532,933 - Synpcc7942_0550 0.73 -0.3 532,941 + Synpcc7942_0550 0.75 -1.1 532,954 + Synpcc7942_0550 0.78 +0.2 532,954 - Synpcc7942_0550 0.78 -0.3 532,959 + Synpcc7942_0550 0.79 +0.6 532,959 + Synpcc7942_0550 0.79 +0.6 532,962 - Synpcc7942_0550 0.80 +1.6 532,972 - Synpcc7942_0550 0.83 +0.2 533,003 + +1.6 533,003 + +0.1 533,003 + +1.6 533,003 + -0.7 533,039 - +1.2 533,039 - +0.3 533,071 + -0.2 533,081 + +0.3 533,081 + -0.9 533,081 + -1.6 533,081 + -0.8 533,081 + -0.6 533,081 + -0.5 533,088 + +1.6 533,088 + +0.3 533,089 - +0.6 533,089 - -0.7 533,089 - -0.8 533,089 - -0.1 533,089 - -0.6 533,249 + -0.8 533,431 + -1.1 533,502 + +0.0 533,502 + -0.3 533,508 - +0.4 533,553 + +0.0 533,560 + -0.6 533,561 - -1.0 533,561 - -0.5 533,579 + +0.0 533,658 - Synpcc7942_0551 0.24 -0.7 533,666 + Synpcc7942_0551 0.26 -1.2 533,751 - Synpcc7942_0551 0.49 -0.2 533,756 - Synpcc7942_0551 0.50 -0.4 533,777 - Synpcc7942_0551 0.56 -0.5 533,815 + Synpcc7942_0551 0.66 +2.2 533,823 - Synpcc7942_0551 0.68 +0.0 533,833 + Synpcc7942_0551 0.71 -0.6 533,846 + Synpcc7942_0551 0.74 -1.2 533,846 + Synpcc7942_0551 0.74 -0.9 533,902 - Synpcc7942_0551 0.89 -1.0 533,915 + -1.5 533,923 - -2.1 533,937 + -0.7 534,061 - -0.5
Or see this region's nucleotide sequence