Experiment: 15:15 LD cycle bioreactor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0495 and Synpcc7942_0496 are separated by 116 nucleotides Synpcc7942_0496 and Synpcc7942_0497 are separated by 4 nucleotides Synpcc7942_0497 and Synpcc7942_0498 are separated by 80 nucleotides
Synpcc7942_0495: Synpcc7942_0495 - hypothetical protein, at 482,981 to 483,517
_0495
Synpcc7942_0496: Synpcc7942_0496 - hypothetical protein, at 483,634 to 484,323
_0496
Synpcc7942_0497: Synpcc7942_0497 - hypothetical protein, at 484,328 to 484,504
_0497
Synpcc7942_0498: Synpcc7942_0498 - mannose-1-phosphate guanyltransferase, at 484,585 to 487,098
_0498
Position (kb) 484
485 Strain fitness (log2 ratio) -2
-1
0
1
2 at 483.435 kb on - strand, within Synpcc7942_0495 at 483.489 kb on + strand at 483.504 kb on - strand at 483.512 kb on - strand at 483.549 kb on + strand at 483.587 kb on - strand at 483.638 kb on + strand at 483.638 kb on + strand at 483.638 kb on + strand at 483.639 kb on - strand at 483.640 kb on - strand at 483.646 kb on - strand at 483.651 kb on - strand at 483.655 kb on + strand at 483.663 kb on - strand at 483.682 kb on - strand at 483.689 kb on + strand at 483.702 kb on - strand at 483.713 kb on + strand, within Synpcc7942_0496 at 483.721 kb on - strand, within Synpcc7942_0496 at 483.721 kb on - strand, within Synpcc7942_0496 at 483.759 kb on + strand, within Synpcc7942_0496 at 483.778 kb on - strand, within Synpcc7942_0496 at 483.782 kb on + strand, within Synpcc7942_0496 at 483.782 kb on + strand, within Synpcc7942_0496 at 483.790 kb on - strand, within Synpcc7942_0496 at 483.790 kb on - strand, within Synpcc7942_0496 at 483.790 kb on - strand, within Synpcc7942_0496 at 483.817 kb on - strand, within Synpcc7942_0496 at 483.852 kb on + strand, within Synpcc7942_0496 at 483.907 kb on + strand, within Synpcc7942_0496 at 483.980 kb on + strand, within Synpcc7942_0496 at 483.980 kb on + strand, within Synpcc7942_0496 at 483.982 kb on + strand, within Synpcc7942_0496 at 483.988 kb on - strand, within Synpcc7942_0496 at 483.988 kb on - strand, within Synpcc7942_0496 at 483.988 kb on - strand, within Synpcc7942_0496 at 483.990 kb on + strand, within Synpcc7942_0496 at 483.998 kb on - strand, within Synpcc7942_0496 at 483.998 kb on - strand, within Synpcc7942_0496 at 484.010 kb on - strand, within Synpcc7942_0496 at 484.079 kb on + strand, within Synpcc7942_0496 at 484.111 kb on + strand, within Synpcc7942_0496 at 484.111 kb on + strand, within Synpcc7942_0496 at 484.119 kb on - strand, within Synpcc7942_0496 at 484.134 kb on - strand, within Synpcc7942_0496 at 484.183 kb on + strand at 484.196 kb on + strand, within Synpcc7942_0496 at 484.240 kb on + strand, within Synpcc7942_0496 at 484.248 kb on - strand, within Synpcc7942_0496 at 484.301 kb on + strand at 484.301 kb on + strand at 484.301 kb on + strand at 484.301 kb on + strand at 484.308 kb on + strand at 484.309 kb on - strand at 484.309 kb on - strand at 484.325 kb on + strand at 484.325 kb on + strand at 484.333 kb on - strand at 484.333 kb on - strand at 484.333 kb on - strand at 484.339 kb on - strand at 484.344 kb on + strand at 484.367 kb on - strand, within Synpcc7942_0497 at 484.367 kb on - strand, within Synpcc7942_0497 at 484.369 kb on + strand, within Synpcc7942_0497 at 484.376 kb on + strand, within Synpcc7942_0497 at 484.386 kb on + strand, within Synpcc7942_0497 at 484.389 kb on - strand, within Synpcc7942_0497 at 484.394 kb on - strand, within Synpcc7942_0497 at 484.446 kb on - strand, within Synpcc7942_0497 at 484.451 kb on - strand, within Synpcc7942_0497 at 484.474 kb on + strand, within Synpcc7942_0497 at 484.475 kb on + strand, within Synpcc7942_0497 at 484.482 kb on - strand, within Synpcc7942_0497 at 484.490 kb on + strand at 484.527 kb on - strand at 484.564 kb on + strand at 484.579 kb on + strand at 484.581 kb on + strand at 484.589 kb on - strand at 484.594 kb on + strand at 484.631 kb on - strand at 484.655 kb on - strand at 484.660 kb on - strand at 484.691 kb on + strand at 484.762 kb on + strand at 484.770 kb on - strand at 484.770 kb on - strand at 484.770 kb on - strand at 484.783 kb on + strand at 484.783 kb on + strand at 484.783 kb on + strand at 484.783 kb on + strand at 484.783 kb on + strand at 484.783 kb on + strand at 484.783 kb on + strand at 484.791 kb on - strand at 484.791 kb on - strand at 484.791 kb on - strand at 484.791 kb on - strand at 484.791 kb on - strand at 484.791 kb on - strand at 484.796 kb on - strand at 484.796 kb on - strand at 484.834 kb on - strand at 484.838 kb on - strand, within Synpcc7942_0498 at 484.853 kb on + strand, within Synpcc7942_0498 at 484.858 kb on + strand, within Synpcc7942_0498 at 484.868 kb on + strand at 484.868 kb on - strand, within Synpcc7942_0498 at 484.924 kb on - strand, within Synpcc7942_0498 at 484.931 kb on - strand, within Synpcc7942_0498 at 484.933 kb on + strand, within Synpcc7942_0498 at 484.954 kb on + strand, within Synpcc7942_0498 at 484.962 kb on - strand, within Synpcc7942_0498 at 485.025 kb on - strand, within Synpcc7942_0498 at 485.110 kb on + strand, within Synpcc7942_0498 at 485.122 kb on + strand, within Synpcc7942_0498 at 485.122 kb on + strand, within Synpcc7942_0498 at 485.122 kb on + strand at 485.122 kb on + strand, within Synpcc7942_0498 at 485.122 kb on + strand, within Synpcc7942_0498 at 485.122 kb on + strand, within Synpcc7942_0498 at 485.122 kb on + strand, within Synpcc7942_0498 at 485.130 kb on - strand, within Synpcc7942_0498 at 485.130 kb on - strand, within Synpcc7942_0498 at 485.130 kb on - strand, within Synpcc7942_0498 at 485.130 kb on - strand, within Synpcc7942_0498 at 485.130 kb on - strand, within Synpcc7942_0498 at 485.130 kb on - strand, within Synpcc7942_0498 at 485.130 kb on - strand, within Synpcc7942_0498 at 485.166 kb on - strand, within Synpcc7942_0498 at 485.178 kb on - strand, within Synpcc7942_0498 at 485.213 kb on + strand, within Synpcc7942_0498 at 485.213 kb on + strand, within Synpcc7942_0498 at 485.226 kb on + strand, within Synpcc7942_0498 at 485.228 kb on + strand, within Synpcc7942_0498 at 485.231 kb on - strand, within Synpcc7942_0498 at 485.247 kb on + strand, within Synpcc7942_0498 at 485.247 kb on + strand, within Synpcc7942_0498 at 485.248 kb on + strand, within Synpcc7942_0498 at 485.255 kb on - strand, within Synpcc7942_0498 at 485.255 kb on - strand, within Synpcc7942_0498 at 485.255 kb on - strand, within Synpcc7942_0498 at 485.258 kb on + strand, within Synpcc7942_0498 at 485.279 kb on - strand, within Synpcc7942_0498 at 485.330 kb on + strand, within Synpcc7942_0498 at 485.330 kb on + strand, within Synpcc7942_0498 at 485.330 kb on + strand, within Synpcc7942_0498 at 485.332 kb on + strand, within Synpcc7942_0498 at 485.338 kb on - strand, within Synpcc7942_0498 at 485.344 kb on - strand, within Synpcc7942_0498 at 485.351 kb on + strand, within Synpcc7942_0498 at 485.358 kb on + strand, within Synpcc7942_0498 at 485.358 kb on + strand, within Synpcc7942_0498 at 485.363 kb on + strand, within Synpcc7942_0498 at 485.366 kb on - strand, within Synpcc7942_0498 at 485.393 kb on - strand, within Synpcc7942_0498 at 485.403 kb on + strand, within Synpcc7942_0498 at 485.435 kb on - strand, within Synpcc7942_0498 at 485.435 kb on - strand, within Synpcc7942_0498 at 485.435 kb on - strand, within Synpcc7942_0498 at 485.435 kb on - strand, within Synpcc7942_0498 at 485.470 kb on - strand, within Synpcc7942_0498 at 485.486 kb on + strand, within Synpcc7942_0498 at 485.494 kb on - strand, within Synpcc7942_0498 at 485.496 kb on + strand, within Synpcc7942_0498 at 485.504 kb on - strand, within Synpcc7942_0498
Per-strain Table
Position Strand Gene LocusTag Fraction 15:15 LD cycle bioreactor remove 483,435 - Synpcc7942_0495 0.85 -1.3 483,489 + -0.7 483,504 - -1.5 483,512 - -0.4 483,549 + -1.2 483,587 - +0.5 483,638 + -1.0 483,638 + -0.8 483,638 + -2.0 483,639 - +0.0 483,640 - -0.5 483,646 - -0.1 483,651 - -1.4 483,655 + -0.9 483,663 - +2.2 483,682 - +0.0 483,689 + -0.7 483,702 - -0.0 483,713 + Synpcc7942_0496 0.11 +0.3 483,721 - Synpcc7942_0496 0.13 +0.4 483,721 - Synpcc7942_0496 0.13 +1.6 483,759 + Synpcc7942_0496 0.18 -0.1 483,778 - Synpcc7942_0496 0.21 +0.7 483,782 + Synpcc7942_0496 0.21 -1.6 483,782 + Synpcc7942_0496 0.21 -0.7 483,790 - Synpcc7942_0496 0.23 +0.1 483,790 - Synpcc7942_0496 0.23 -0.1 483,790 - Synpcc7942_0496 0.23 -0.2 483,817 - Synpcc7942_0496 0.27 +0.6 483,852 + Synpcc7942_0496 0.32 -0.3 483,907 + Synpcc7942_0496 0.40 +0.3 483,980 + Synpcc7942_0496 0.50 -1.2 483,980 + Synpcc7942_0496 0.50 +1.0 483,982 + Synpcc7942_0496 0.50 -0.4 483,988 - Synpcc7942_0496 0.51 -0.1 483,988 - Synpcc7942_0496 0.51 -1.3 483,988 - Synpcc7942_0496 0.51 +0.3 483,990 + Synpcc7942_0496 0.52 -1.7 483,998 - Synpcc7942_0496 0.53 -1.2 483,998 - Synpcc7942_0496 0.53 -1.0 484,010 - Synpcc7942_0496 0.54 -0.5 484,079 + Synpcc7942_0496 0.64 +0.9 484,111 + Synpcc7942_0496 0.69 +1.6 484,111 + Synpcc7942_0496 0.69 -0.9 484,119 - Synpcc7942_0496 0.70 +0.0 484,134 - Synpcc7942_0496 0.72 -0.4 484,183 + +1.8 484,196 + Synpcc7942_0496 0.81 -0.3 484,240 + Synpcc7942_0496 0.88 -0.1 484,248 - Synpcc7942_0496 0.89 +0.0 484,301 + -0.2 484,301 + +0.1 484,301 + -1.1 484,301 + -0.4 484,308 + -0.6 484,309 - -0.3 484,309 - -1.0 484,325 + -0.4 484,325 + +0.6 484,333 - -0.6 484,333 - -1.1 484,333 - -2.5 484,339 - +0.6 484,344 + +0.9 484,367 - Synpcc7942_0497 0.22 +1.6 484,367 - Synpcc7942_0497 0.22 -2.0 484,369 + Synpcc7942_0497 0.23 +0.0 484,376 + Synpcc7942_0497 0.27 -1.8 484,386 + Synpcc7942_0497 0.33 +0.0 484,389 - Synpcc7942_0497 0.34 -1.1 484,394 - Synpcc7942_0497 0.37 +0.0 484,446 - Synpcc7942_0497 0.67 -0.1 484,451 - Synpcc7942_0497 0.69 +1.6 484,474 + Synpcc7942_0497 0.82 +0.0 484,475 + Synpcc7942_0497 0.83 +0.0 484,482 - Synpcc7942_0497 0.87 -1.0 484,490 + -0.5 484,527 - -1.2 484,564 + -1.5 484,579 + -0.8 484,581 + +0.1 484,589 - -1.2 484,594 + -0.3 484,631 - -1.2 484,655 - -1.6 484,660 - +0.4 484,691 + +0.0 484,762 + -1.0 484,770 - -1.4 484,770 - -1.9 484,770 - -1.0 484,783 + -1.3 484,783 + -1.4 484,783 + -1.7 484,783 + -1.6 484,783 + +1.6 484,783 + -1.0 484,783 + +1.0 484,791 - -1.2 484,791 - +1.0 484,791 - -0.9 484,791 - -1.7 484,791 - -0.5 484,791 - -0.1 484,796 - -0.2 484,796 - -2.4 484,834 - +0.2 484,838 - Synpcc7942_0498 0.10 +0.0 484,853 + Synpcc7942_0498 0.11 +0.0 484,858 + Synpcc7942_0498 0.11 -1.3 484,868 + -0.8 484,868 - Synpcc7942_0498 0.11 -0.2 484,924 - Synpcc7942_0498 0.13 -1.7 484,931 - Synpcc7942_0498 0.14 -2.0 484,933 + Synpcc7942_0498 0.14 -1.7 484,954 + Synpcc7942_0498 0.15 +0.8 484,962 - Synpcc7942_0498 0.15 +0.0 485,025 - Synpcc7942_0498 0.18 -1.2 485,110 + Synpcc7942_0498 0.21 -1.0 485,122 + Synpcc7942_0498 0.21 -1.5 485,122 + Synpcc7942_0498 0.21 +0.6 485,122 + -1.4 485,122 + Synpcc7942_0498 0.21 -0.7 485,122 + Synpcc7942_0498 0.21 -1.3 485,122 + Synpcc7942_0498 0.21 -0.4 485,122 + Synpcc7942_0498 0.21 -0.4 485,130 - Synpcc7942_0498 0.22 -1.7 485,130 - Synpcc7942_0498 0.22 -0.4 485,130 - Synpcc7942_0498 0.22 -0.8 485,130 - Synpcc7942_0498 0.22 -2.4 485,130 - Synpcc7942_0498 0.22 -1.5 485,130 - Synpcc7942_0498 0.22 -0.6 485,130 - Synpcc7942_0498 0.22 -0.9 485,166 - Synpcc7942_0498 0.23 -1.2 485,178 - Synpcc7942_0498 0.24 -0.5 485,213 + Synpcc7942_0498 0.25 -1.7 485,213 + Synpcc7942_0498 0.25 +1.6 485,226 + Synpcc7942_0498 0.25 -0.4 485,228 + Synpcc7942_0498 0.26 +0.0 485,231 - Synpcc7942_0498 0.26 -2.0 485,247 + Synpcc7942_0498 0.26 -1.0 485,247 + Synpcc7942_0498 0.26 +0.6 485,248 + Synpcc7942_0498 0.26 +0.0 485,255 - Synpcc7942_0498 0.27 -1.4 485,255 - Synpcc7942_0498 0.27 -1.2 485,255 - Synpcc7942_0498 0.27 -1.2 485,258 + Synpcc7942_0498 0.27 +0.3 485,279 - Synpcc7942_0498 0.28 -1.1 485,330 + Synpcc7942_0498 0.30 -1.4 485,330 + Synpcc7942_0498 0.30 -1.9 485,330 + Synpcc7942_0498 0.30 -1.4 485,332 + Synpcc7942_0498 0.30 -1.2 485,338 - Synpcc7942_0498 0.30 -0.1 485,344 - Synpcc7942_0498 0.30 -0.7 485,351 + Synpcc7942_0498 0.30 -0.4 485,358 + Synpcc7942_0498 0.31 +0.6 485,358 + Synpcc7942_0498 0.31 -1.5 485,363 + Synpcc7942_0498 0.31 -2.2 485,366 - Synpcc7942_0498 0.31 +0.6 485,393 - Synpcc7942_0498 0.32 -1.8 485,403 + Synpcc7942_0498 0.33 -1.6 485,435 - Synpcc7942_0498 0.34 -1.4 485,435 - Synpcc7942_0498 0.34 -1.7 485,435 - Synpcc7942_0498 0.34 -0.7 485,435 - Synpcc7942_0498 0.34 -1.2 485,470 - Synpcc7942_0498 0.35 -0.2 485,486 + Synpcc7942_0498 0.36 -1.6 485,494 - Synpcc7942_0498 0.36 -0.2 485,496 + Synpcc7942_0498 0.36 -2.0 485,504 - Synpcc7942_0498 0.37 -2.0
Or see this region's nucleotide sequence