Experiment: 15:15 LD cycle bioreactor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0453 and cobS overlap by 20 nucleotides cobS and tgt are separated by 28 nucleotides
Synpcc7942_0453: Synpcc7942_0453 - GAF sensor signal transduction histidine kinase, at 442,022 to 443,236
_0453
Synpcc7942_0454: cobS - cobalamin synthase, at 443,217 to 443,972
cobS
Synpcc7942_0455: tgt - queuine tRNA-ribosyltransferase, at 444,001 to 445,155
tgt
Position (kb) 443
444 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 443.209 kb on + strand at 443.215 kb on + strand at 443.215 kb on + strand at 443.953 kb on + strand at 443.953 kb on + strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.981 kb on + strand at 444.004 kb on + strand at 444.017 kb on - strand at 444.042 kb on + strand at 444.042 kb on - strand at 444.070 kb on + strand at 444.073 kb on - strand at 444.073 kb on - strand at 444.096 kb on - strand at 444.107 kb on + strand at 444.207 kb on + strand, within tgt at 444.207 kb on + strand, within tgt at 444.207 kb on + strand, within tgt at 444.207 kb on + strand, within tgt at 444.215 kb on - strand, within tgt at 444.215 kb on - strand, within tgt at 444.215 kb on - strand, within tgt at 444.221 kb on - strand, within tgt at 444.238 kb on + strand, within tgt at 444.246 kb on + strand, within tgt at 444.246 kb on - strand, within tgt at 444.255 kb on - strand, within tgt at 444.274 kb on - strand, within tgt at 444.293 kb on + strand, within tgt at 444.301 kb on - strand, within tgt at 444.334 kb on - strand, within tgt at 444.345 kb on + strand, within tgt at 444.358 kb on - strand, within tgt at 444.358 kb on - strand, within tgt at 444.360 kb on - strand, within tgt at 444.382 kb on + strand, within tgt at 444.382 kb on + strand, within tgt at 444.390 kb on - strand, within tgt at 444.464 kb on - strand, within tgt at 444.483 kb on + strand, within tgt at 444.503 kb on - strand, within tgt at 444.533 kb on - strand, within tgt at 444.576 kb on - strand, within tgt at 444.595 kb on + strand, within tgt at 444.595 kb on + strand, within tgt at 444.595 kb on + strand, within tgt at 444.595 kb on + strand, within tgt at 444.603 kb on - strand, within tgt at 444.603 kb on - strand, within tgt at 444.603 kb on - strand, within tgt at 444.603 kb on - strand, within tgt at 444.738 kb on + strand, within tgt at 444.749 kb on + strand, within tgt at 444.749 kb on + strand, within tgt at 444.749 kb on + strand, within tgt at 444.757 kb on - strand, within tgt at 444.773 kb on + strand, within tgt at 444.796 kb on + strand, within tgt at 444.858 kb on + strand, within tgt at 444.858 kb on + strand, within tgt at 444.871 kb on - strand, within tgt at 444.902 kb on + strand, within tgt at 444.948 kb on + strand, within tgt
Per-strain Table
Position Strand Gene LocusTag Fraction 15:15 LD cycle bioreactor remove 443,209 + -1.1 443,215 + -0.8 443,215 + -0.5 443,953 + +0.6 443,953 + +0.1 443,961 - -0.9 443,961 - -1.2 443,961 - -0.8 443,961 - -2.2 443,961 - -0.4 443,961 - +0.3 443,961 - +0.0 443,961 - -1.2 443,961 - +0.0 443,981 + +0.1 444,004 + +1.6 444,017 - +0.6 444,042 + +0.1 444,042 - -0.5 444,070 + +0.6 444,073 - +3.4 444,073 - +0.6 444,096 - +3.2 444,107 + +3.6 444,207 + tgt Synpcc7942_0455 0.18 +4.4 444,207 + tgt Synpcc7942_0455 0.18 +1.6 444,207 + tgt Synpcc7942_0455 0.18 +3.2 444,207 + tgt Synpcc7942_0455 0.18 +1.3 444,215 - tgt Synpcc7942_0455 0.19 +2.6 444,215 - tgt Synpcc7942_0455 0.19 +0.8 444,215 - tgt Synpcc7942_0455 0.19 +0.0 444,221 - tgt Synpcc7942_0455 0.19 +0.5 444,238 + tgt Synpcc7942_0455 0.21 +1.6 444,246 + tgt Synpcc7942_0455 0.21 +0.6 444,246 - tgt Synpcc7942_0455 0.21 +0.6 444,255 - tgt Synpcc7942_0455 0.22 +1.0 444,274 - tgt Synpcc7942_0455 0.24 +1.3 444,293 + tgt Synpcc7942_0455 0.25 +3.1 444,301 - tgt Synpcc7942_0455 0.26 +0.0 444,334 - tgt Synpcc7942_0455 0.29 +2.1 444,345 + tgt Synpcc7942_0455 0.30 +2.6 444,358 - tgt Synpcc7942_0455 0.31 +1.6 444,358 - tgt Synpcc7942_0455 0.31 +0.6 444,360 - tgt Synpcc7942_0455 0.31 -3.8 444,382 + tgt Synpcc7942_0455 0.33 -0.4 444,382 + tgt Synpcc7942_0455 0.33 +2.6 444,390 - tgt Synpcc7942_0455 0.34 +2.6 444,464 - tgt Synpcc7942_0455 0.40 +1.6 444,483 + tgt Synpcc7942_0455 0.42 +2.9 444,503 - tgt Synpcc7942_0455 0.43 +0.0 444,533 - tgt Synpcc7942_0455 0.46 +0.6 444,576 - tgt Synpcc7942_0455 0.50 +1.6 444,595 + tgt Synpcc7942_0455 0.51 +1.9 444,595 + tgt Synpcc7942_0455 0.51 +0.6 444,595 + tgt Synpcc7942_0455 0.51 +2.6 444,595 + tgt Synpcc7942_0455 0.51 +2.6 444,603 - tgt Synpcc7942_0455 0.52 +2.6 444,603 - tgt Synpcc7942_0455 0.52 +1.6 444,603 - tgt Synpcc7942_0455 0.52 +0.3 444,603 - tgt Synpcc7942_0455 0.52 +0.8 444,738 + tgt Synpcc7942_0455 0.64 +1.9 444,749 + tgt Synpcc7942_0455 0.65 +1.3 444,749 + tgt Synpcc7942_0455 0.65 +1.9 444,749 + tgt Synpcc7942_0455 0.65 +1.9 444,757 - tgt Synpcc7942_0455 0.65 +2.2 444,773 + tgt Synpcc7942_0455 0.67 +0.6 444,796 + tgt Synpcc7942_0455 0.69 +1.3 444,858 + tgt Synpcc7942_0455 0.74 +2.6 444,858 + tgt Synpcc7942_0455 0.74 +0.9 444,871 - tgt Synpcc7942_0455 0.75 +1.6 444,902 + tgt Synpcc7942_0455 0.78 +2.1 444,948 + tgt Synpcc7942_0455 0.82 +3.1
Or see this region's nucleotide sequence