Experiment: 15:15 LD cycle bioreactor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bioB and Synpcc7942_0420 are separated by 47 nucleotides Synpcc7942_0420 and Synpcc7942_0421 are separated by 31 nucleotides Synpcc7942_0421 and Synpcc7942_0422 are separated by 200 nucleotides
Synpcc7942_0419: bioB - biotin synthase, at 408,941 to 409,903
bioB
Synpcc7942_0420: Synpcc7942_0420 - hypothetical protein, at 409,951 to 411,516
_0420
Synpcc7942_0421: Synpcc7942_0421 - hypothetical protein, at 411,548 to 411,946
_0421
Synpcc7942_0422: Synpcc7942_0422 - hypothetical protein, at 412,147 to 413,289
_0422
Position (kb) 409
410
411
412 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 408.953 kb on - strand at 409.897 kb on + strand at 409.948 kb on + strand at 409.956 kb on - strand at 410.051 kb on - strand at 410.081 kb on + strand at 410.089 kb on - strand at 410.089 kb on - strand at 410.100 kb on + strand at 410.171 kb on + strand, within Synpcc7942_0420 at 410.257 kb on + strand, within Synpcc7942_0420 at 410.267 kb on + strand, within Synpcc7942_0420 at 410.275 kb on - strand, within Synpcc7942_0420 at 410.281 kb on + strand, within Synpcc7942_0420 at 410.314 kb on - strand, within Synpcc7942_0420 at 410.337 kb on - strand, within Synpcc7942_0420 at 410.337 kb on - strand, within Synpcc7942_0420 at 410.428 kb on + strand, within Synpcc7942_0420 at 410.446 kb on + strand, within Synpcc7942_0420 at 410.452 kb on + strand, within Synpcc7942_0420 at 410.575 kb on + strand, within Synpcc7942_0420 at 410.605 kb on + strand, within Synpcc7942_0420 at 410.605 kb on + strand, within Synpcc7942_0420 at 410.613 kb on - strand, within Synpcc7942_0420 at 410.761 kb on + strand, within Synpcc7942_0420 at 410.761 kb on + strand, within Synpcc7942_0420 at 410.766 kb on + strand, within Synpcc7942_0420 at 410.766 kb on + strand, within Synpcc7942_0420 at 410.774 kb on - strand, within Synpcc7942_0420 at 410.822 kb on - strand, within Synpcc7942_0420 at 410.860 kb on + strand, within Synpcc7942_0420 at 410.860 kb on + strand, within Synpcc7942_0420 at 410.860 kb on + strand, within Synpcc7942_0420 at 410.867 kb on + strand, within Synpcc7942_0420 at 410.867 kb on + strand, within Synpcc7942_0420 at 410.868 kb on - strand, within Synpcc7942_0420 at 410.872 kb on + strand, within Synpcc7942_0420 at 410.872 kb on + strand, within Synpcc7942_0420 at 410.875 kb on - strand, within Synpcc7942_0420 at 410.918 kb on + strand, within Synpcc7942_0420 at 410.929 kb on - strand, within Synpcc7942_0420 at 410.953 kb on - strand, within Synpcc7942_0420 at 411.033 kb on - strand, within Synpcc7942_0420 at 411.063 kb on + strand, within Synpcc7942_0420 at 411.071 kb on - strand, within Synpcc7942_0420 at 411.114 kb on - strand, within Synpcc7942_0420 at 411.243 kb on + strand, within Synpcc7942_0420 at 411.243 kb on + strand, within Synpcc7942_0420 at 411.243 kb on + strand, within Synpcc7942_0420 at 411.251 kb on - strand, within Synpcc7942_0420 at 411.251 kb on - strand, within Synpcc7942_0420 at 411.272 kb on + strand, within Synpcc7942_0420 at 411.297 kb on - strand, within Synpcc7942_0420 at 411.332 kb on + strand, within Synpcc7942_0420 at 411.334 kb on + strand, within Synpcc7942_0420 at 411.350 kb on + strand, within Synpcc7942_0420 at 411.350 kb on + strand, within Synpcc7942_0420 at 411.350 kb on + strand, within Synpcc7942_0420 at 411.363 kb on - strand at 411.381 kb on + strand at 411.381 kb on + strand at 411.390 kb on + strand at 411.398 kb on - strand at 411.398 kb on - strand at 411.433 kb on + strand at 411.566 kb on - strand at 411.607 kb on + strand, within Synpcc7942_0421 at 411.614 kb on + strand, within Synpcc7942_0421 at 411.622 kb on - strand, within Synpcc7942_0421 at 411.622 kb on - strand, within Synpcc7942_0421 at 411.676 kb on - strand, within Synpcc7942_0421 at 411.682 kb on - strand, within Synpcc7942_0421 at 411.682 kb on - strand, within Synpcc7942_0421 at 411.682 kb on - strand, within Synpcc7942_0421 at 411.682 kb on - strand, within Synpcc7942_0421 at 411.715 kb on - strand, within Synpcc7942_0421 at 411.742 kb on - strand, within Synpcc7942_0421 at 411.742 kb on - strand, within Synpcc7942_0421 at 411.804 kb on + strand, within Synpcc7942_0421 at 411.804 kb on + strand, within Synpcc7942_0421 at 411.804 kb on + strand, within Synpcc7942_0421 at 411.812 kb on - strand, within Synpcc7942_0421 at 411.812 kb on - strand, within Synpcc7942_0421 at 411.812 kb on - strand, within Synpcc7942_0421 at 411.819 kb on + strand, within Synpcc7942_0421 at 411.831 kb on + strand, within Synpcc7942_0421 at 411.831 kb on + strand, within Synpcc7942_0421 at 411.839 kb on - strand, within Synpcc7942_0421 at 411.839 kb on - strand, within Synpcc7942_0421 at 411.846 kb on - strand, within Synpcc7942_0421 at 411.902 kb on - strand, within Synpcc7942_0421 at 411.905 kb on + strand, within Synpcc7942_0421 at 411.946 kb on + strand at 411.953 kb on + strand at 411.953 kb on + strand at 411.982 kb on - strand at 411.990 kb on + strand at 411.998 kb on - strand at 411.998 kb on - strand at 412.009 kb on + strand at 412.009 kb on + strand at 412.015 kb on + strand at 412.023 kb on - strand at 412.046 kb on + strand at 412.052 kb on + strand at 412.065 kb on - strand at 412.065 kb on - strand at 412.065 kb on - strand at 412.065 kb on - strand at 412.065 kb on - strand at 412.091 kb on + strand at 412.099 kb on - strand at 412.123 kb on + strand at 412.133 kb on + strand at 412.133 kb on + strand at 412.166 kb on - strand at 412.185 kb on + strand at 412.188 kb on - strand at 412.193 kb on - strand at 412.193 kb on - strand at 412.193 kb on - strand at 412.196 kb on - strand at 412.207 kb on + strand at 412.207 kb on + strand at 412.207 kb on + strand at 412.215 kb on + strand at 412.215 kb on + strand at 412.215 kb on + strand at 412.223 kb on - strand at 412.239 kb on + strand at 412.239 kb on + strand at 412.247 kb on - strand at 412.294 kb on - strand, within Synpcc7942_0422 at 412.313 kb on - strand, within Synpcc7942_0422 at 412.422 kb on + strand, within Synpcc7942_0422 at 412.489 kb on + strand, within Synpcc7942_0422 at 412.499 kb on + strand, within Synpcc7942_0422 at 412.499 kb on + strand, within Synpcc7942_0422 at 412.507 kb on - strand, within Synpcc7942_0422 at 412.507 kb on - strand, within Synpcc7942_0422 at 412.507 kb on - strand, within Synpcc7942_0422 at 412.514 kb on + strand, within Synpcc7942_0422
Per-strain Table
Position Strand Gene LocusTag Fraction 15:15 LD cycle bioreactor remove 408,953 - -0.4 409,897 + -0.3 409,948 + -0.7 409,956 - -0.6 410,051 - -1.6 410,081 + -1.7 410,089 - -0.4 410,089 - +0.4 410,100 + -1.1 410,171 + Synpcc7942_0420 0.14 -2.7 410,257 + Synpcc7942_0420 0.20 -1.4 410,267 + Synpcc7942_0420 0.20 -0.7 410,275 - Synpcc7942_0420 0.21 -0.4 410,281 + Synpcc7942_0420 0.21 +0.1 410,314 - Synpcc7942_0420 0.23 +0.2 410,337 - Synpcc7942_0420 0.25 -0.8 410,337 - Synpcc7942_0420 0.25 -1.1 410,428 + Synpcc7942_0420 0.30 -0.7 410,446 + Synpcc7942_0420 0.32 -0.8 410,452 + Synpcc7942_0420 0.32 +0.1 410,575 + Synpcc7942_0420 0.40 +0.6 410,605 + Synpcc7942_0420 0.42 +0.6 410,605 + Synpcc7942_0420 0.42 -0.9 410,613 - Synpcc7942_0420 0.42 -1.5 410,761 + Synpcc7942_0420 0.52 -1.2 410,761 + Synpcc7942_0420 0.52 -0.7 410,766 + Synpcc7942_0420 0.52 -2.1 410,766 + Synpcc7942_0420 0.52 -0.3 410,774 - Synpcc7942_0420 0.53 -0.9 410,822 - Synpcc7942_0420 0.56 +0.1 410,860 + Synpcc7942_0420 0.58 -0.4 410,860 + Synpcc7942_0420 0.58 +1.6 410,860 + Synpcc7942_0420 0.58 -0.7 410,867 + Synpcc7942_0420 0.58 +1.6 410,867 + Synpcc7942_0420 0.58 +0.1 410,868 - Synpcc7942_0420 0.59 -1.1 410,872 + Synpcc7942_0420 0.59 -0.8 410,872 + Synpcc7942_0420 0.59 -0.4 410,875 - Synpcc7942_0420 0.59 +3.6 410,918 + Synpcc7942_0420 0.62 -0.9 410,929 - Synpcc7942_0420 0.62 +0.1 410,953 - Synpcc7942_0420 0.64 -2.5 411,033 - Synpcc7942_0420 0.69 -0.7 411,063 + Synpcc7942_0420 0.71 -1.8 411,071 - Synpcc7942_0420 0.72 +1.6 411,114 - Synpcc7942_0420 0.74 +0.6 411,243 + Synpcc7942_0420 0.83 -1.0 411,243 + Synpcc7942_0420 0.83 +0.0 411,243 + Synpcc7942_0420 0.83 -0.7 411,251 - Synpcc7942_0420 0.83 -0.6 411,251 - Synpcc7942_0420 0.83 +0.0 411,272 + Synpcc7942_0420 0.84 +0.8 411,297 - Synpcc7942_0420 0.86 -0.7 411,332 + Synpcc7942_0420 0.88 -1.0 411,334 + Synpcc7942_0420 0.88 -0.7 411,350 + Synpcc7942_0420 0.89 -2.4 411,350 + Synpcc7942_0420 0.89 -1.2 411,350 + Synpcc7942_0420 0.89 -1.4 411,363 - +0.6 411,381 + -1.0 411,381 + +0.1 411,390 + -0.3 411,398 - -1.4 411,398 - -0.1 411,433 + -0.7 411,566 - -1.0 411,607 + Synpcc7942_0421 0.15 -1.2 411,614 + Synpcc7942_0421 0.17 +1.6 411,622 - Synpcc7942_0421 0.19 -0.5 411,622 - Synpcc7942_0421 0.19 -1.2 411,676 - Synpcc7942_0421 0.32 -2.4 411,682 - Synpcc7942_0421 0.34 -1.2 411,682 - Synpcc7942_0421 0.34 -1.1 411,682 - Synpcc7942_0421 0.34 -1.1 411,682 - Synpcc7942_0421 0.34 -1.1 411,715 - Synpcc7942_0421 0.42 -1.0 411,742 - Synpcc7942_0421 0.49 -1.1 411,742 - Synpcc7942_0421 0.49 -1.0 411,804 + Synpcc7942_0421 0.64 -0.4 411,804 + Synpcc7942_0421 0.64 +0.0 411,804 + Synpcc7942_0421 0.64 -1.2 411,812 - Synpcc7942_0421 0.66 -0.4 411,812 - Synpcc7942_0421 0.66 +0.0 411,812 - Synpcc7942_0421 0.66 +4.3 411,819 + Synpcc7942_0421 0.68 -0.1 411,831 + Synpcc7942_0421 0.71 -1.5 411,831 + Synpcc7942_0421 0.71 +0.0 411,839 - Synpcc7942_0421 0.73 -2.0 411,839 - Synpcc7942_0421 0.73 -0.1 411,846 - Synpcc7942_0421 0.75 -0.6 411,902 - Synpcc7942_0421 0.89 +0.3 411,905 + Synpcc7942_0421 0.89 +0.0 411,946 + +0.0 411,953 + +0.6 411,953 + +0.9 411,982 - -0.4 411,990 + +3.3 411,998 - -0.5 411,998 - +4.2 412,009 + +1.6 412,009 + -1.1 412,015 + -0.2 412,023 - -0.2 412,046 + +0.6 412,052 + +1.3 412,065 - -1.4 412,065 - +0.5 412,065 - +0.4 412,065 - -0.8 412,065 - +0.6 412,091 + +1.1 412,099 - +0.0 412,123 + -0.4 412,133 + +0.1 412,133 + -0.5 412,166 - -0.4 412,185 + -1.1 412,188 - -0.1 412,193 - +0.2 412,193 - +0.3 412,193 - -1.0 412,196 - +0.5 412,207 + +0.2 412,207 + +0.4 412,207 + -0.8 412,215 + +0.4 412,215 + +1.6 412,215 + -1.4 412,223 - -0.5 412,239 + -0.4 412,239 + +0.0 412,247 - -0.0 412,294 - Synpcc7942_0422 0.13 +0.5 412,313 - Synpcc7942_0422 0.15 +0.3 412,422 + Synpcc7942_0422 0.24 +1.6 412,489 + Synpcc7942_0422 0.30 -1.6 412,499 + Synpcc7942_0422 0.31 +0.9 412,499 + Synpcc7942_0422 0.31 +0.0 412,507 - Synpcc7942_0422 0.31 -0.7 412,507 - Synpcc7942_0422 0.31 +1.1 412,507 - Synpcc7942_0422 0.31 +0.0 412,514 + Synpcc7942_0422 0.32 -1.2
Or see this region's nucleotide sequence