Experiment: 15:15 LD cycle bioreactor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt metY and metA are separated by 48 nucleotides metA and Synpcc7942_0372 are separated by 37 nucleotides Synpcc7942_0372 and Synpcc7942_0373 overlap by 116 nucleotides
Synpcc7942_0370: metY - O-acetylhomoserine/O-acetylserine sulfhydrylase, at 363,763 to 365,067
metY
Synpcc7942_0371: metA - homoserine O-succinyltransferase, at 365,116 to 366,015
metA
Synpcc7942_0372: Synpcc7942_0372 - hypothetical protein, at 366,053 to 366,853
_0372
Synpcc7942_0373: Synpcc7942_0373 - hypothetical protein, at 366,738 to 368,024
_0373
Position (kb) 365
366
367 Strain fitness (log2 ratio) -2
-1
0
1
2 at 364.117 kb on + strand, within metY at 364.133 kb on + strand, within metY at 364.206 kb on + strand, within metY at 364.206 kb on + strand at 364.214 kb on - strand, within metY at 364.214 kb on - strand, within metY at 364.215 kb on - strand at 364.231 kb on + strand, within metY at 364.238 kb on - strand, within metY at 364.243 kb on + strand, within metY at 364.244 kb on - strand, within metY at 364.283 kb on + strand, within metY at 364.300 kb on + strand, within metY at 364.324 kb on + strand, within metY at 364.329 kb on + strand, within metY at 364.337 kb on + strand, within metY at 364.337 kb on - strand, within metY at 364.337 kb on - strand, within metY at 364.345 kb on - strand, within metY at 364.363 kb on + strand, within metY at 364.363 kb on + strand, within metY at 364.417 kb on - strand, within metY at 364.472 kb on + strand, within metY at 364.480 kb on - strand, within metY at 364.538 kb on + strand, within metY at 364.546 kb on - strand, within metY at 364.546 kb on - strand at 364.548 kb on + strand, within metY at 364.573 kb on + strand, within metY at 364.581 kb on - strand, within metY at 364.600 kb on - strand, within metY at 364.624 kb on + strand, within metY at 364.631 kb on - strand, within metY at 364.632 kb on - strand, within metY at 364.650 kb on + strand, within metY at 364.650 kb on - strand, within metY at 364.705 kb on - strand, within metY at 364.733 kb on + strand, within metY at 364.733 kb on + strand, within metY at 364.756 kb on + strand, within metY at 364.756 kb on + strand, within metY at 364.764 kb on - strand, within metY at 364.764 kb on - strand, within metY at 364.788 kb on - strand, within metY at 364.788 kb on - strand, within metY at 364.801 kb on + strand, within metY at 364.809 kb on - strand, within metY at 364.809 kb on - strand, within metY at 364.809 kb on - strand, within metY at 364.809 kb on - strand, within metY at 364.831 kb on - strand, within metY at 364.858 kb on + strand, within metY at 364.928 kb on + strand, within metY at 364.936 kb on - strand, within metY at 364.936 kb on - strand, within metY at 364.959 kb on - strand at 364.966 kb on + strand at 364.971 kb on - strand at 364.989 kb on + strand at 364.999 kb on + strand at 365.008 kb on + strand at 365.008 kb on - strand at 365.009 kb on + strand at 365.013 kb on + strand at 365.019 kb on + strand at 365.030 kb on + strand at 365.041 kb on + strand at 365.071 kb on + strand at 365.084 kb on - strand at 365.099 kb on + strand at 365.114 kb on - strand at 365.187 kb on - strand at 365.248 kb on - strand, within metA at 365.257 kb on - strand, within metA at 365.287 kb on + strand, within metA at 365.297 kb on - strand, within metA at 365.317 kb on + strand, within metA at 365.360 kb on - strand, within metA at 365.387 kb on - strand, within metA at 365.428 kb on - strand at 365.477 kb on + strand, within metA at 365.485 kb on - strand, within metA at 365.507 kb on + strand, within metA at 365.764 kb on - strand, within metA at 365.773 kb on + strand, within metA at 365.805 kb on - strand, within metA at 365.819 kb on - strand, within metA at 365.827 kb on - strand, within metA at 365.945 kb on + strand at 365.954 kb on + strand at 366.175 kb on - strand, within Synpcc7942_0372 at 366.186 kb on - strand, within Synpcc7942_0372 at 366.218 kb on - strand, within Synpcc7942_0372 at 366.233 kb on - strand, within Synpcc7942_0372 at 366.246 kb on - strand, within Synpcc7942_0372 at 366.280 kb on + strand, within Synpcc7942_0372 at 366.340 kb on - strand, within Synpcc7942_0372 at 366.403 kb on - strand, within Synpcc7942_0372 at 366.420 kb on - strand, within Synpcc7942_0372 at 366.432 kb on - strand, within Synpcc7942_0372 at 366.452 kb on + strand, within Synpcc7942_0372 at 366.490 kb on - strand, within Synpcc7942_0372 at 366.518 kb on - strand, within Synpcc7942_0372 at 366.526 kb on - strand, within Synpcc7942_0372 at 366.529 kb on + strand, within Synpcc7942_0372 at 366.537 kb on - strand, within Synpcc7942_0372 at 366.641 kb on + strand, within Synpcc7942_0372 at 366.641 kb on + strand, within Synpcc7942_0372 at 366.641 kb on + strand, within Synpcc7942_0372 at 366.649 kb on - strand, within Synpcc7942_0372 at 366.649 kb on - strand, within Synpcc7942_0372 at 366.649 kb on - strand, within Synpcc7942_0372 at 366.649 kb on - strand, within Synpcc7942_0372 at 366.649 kb on - strand, within Synpcc7942_0372 at 366.684 kb on + strand, within Synpcc7942_0372 at 366.685 kb on + strand, within Synpcc7942_0372 at 366.720 kb on + strand, within Synpcc7942_0372 at 366.720 kb on + strand, within Synpcc7942_0372 at 366.730 kb on + strand, within Synpcc7942_0372 at 366.742 kb on + strand at 366.742 kb on + strand at 366.742 kb on + strand at 366.742 kb on + strand at 366.750 kb on - strand at 366.776 kb on + strand at 366.788 kb on + strand at 366.789 kb on + strand at 366.799 kb on - strand at 366.820 kb on + strand at 366.847 kb on + strand at 366.847 kb on + strand at 366.847 kb on + strand at 367.009 kb on - strand, within Synpcc7942_0373
Per-strain Table
Position Strand Gene LocusTag Fraction 15:15 LD cycle bioreactor remove 364,117 + metY Synpcc7942_0370 0.27 -2.0 364,133 + metY Synpcc7942_0370 0.28 -0.5 364,206 + metY Synpcc7942_0370 0.34 -1.6 364,206 + -0.4 364,214 - metY Synpcc7942_0370 0.35 +0.4 364,214 - metY Synpcc7942_0370 0.35 -0.4 364,215 - +0.3 364,231 + metY Synpcc7942_0370 0.36 +0.6 364,238 - metY Synpcc7942_0370 0.36 +0.0 364,243 + metY Synpcc7942_0370 0.37 -0.9 364,244 - metY Synpcc7942_0370 0.37 -0.6 364,283 + metY Synpcc7942_0370 0.40 -1.0 364,300 + metY Synpcc7942_0370 0.41 -0.6 364,324 + metY Synpcc7942_0370 0.43 +1.6 364,329 + metY Synpcc7942_0370 0.43 +0.4 364,337 + metY Synpcc7942_0370 0.44 -0.4 364,337 - metY Synpcc7942_0370 0.44 +0.0 364,337 - metY Synpcc7942_0370 0.44 +0.2 364,345 - metY Synpcc7942_0370 0.45 +0.6 364,363 + metY Synpcc7942_0370 0.46 +0.9 364,363 + metY Synpcc7942_0370 0.46 -0.8 364,417 - metY Synpcc7942_0370 0.50 -0.4 364,472 + metY Synpcc7942_0370 0.54 -0.6 364,480 - metY Synpcc7942_0370 0.55 +0.6 364,538 + metY Synpcc7942_0370 0.59 -1.2 364,546 - metY Synpcc7942_0370 0.60 -0.0 364,546 - -0.5 364,548 + metY Synpcc7942_0370 0.60 +0.8 364,573 + metY Synpcc7942_0370 0.62 -0.4 364,581 - metY Synpcc7942_0370 0.63 -0.4 364,600 - metY Synpcc7942_0370 0.64 -0.6 364,624 + metY Synpcc7942_0370 0.66 +0.2 364,631 - metY Synpcc7942_0370 0.67 -1.5 364,632 - metY Synpcc7942_0370 0.67 -0.5 364,650 + metY Synpcc7942_0370 0.68 +0.2 364,650 - metY Synpcc7942_0370 0.68 +0.0 364,705 - metY Synpcc7942_0370 0.72 -0.7 364,733 + metY Synpcc7942_0370 0.74 -0.7 364,733 + metY Synpcc7942_0370 0.74 -0.4 364,756 + metY Synpcc7942_0370 0.76 -0.6 364,756 + metY Synpcc7942_0370 0.76 +0.5 364,764 - metY Synpcc7942_0370 0.77 -0.7 364,764 - metY Synpcc7942_0370 0.77 +0.8 364,788 - metY Synpcc7942_0370 0.79 +0.6 364,788 - metY Synpcc7942_0370 0.79 -1.2 364,801 + metY Synpcc7942_0370 0.80 -0.7 364,809 - metY Synpcc7942_0370 0.80 -0.3 364,809 - metY Synpcc7942_0370 0.80 -1.4 364,809 - metY Synpcc7942_0370 0.80 +2.0 364,809 - metY Synpcc7942_0370 0.80 +1.0 364,831 - metY Synpcc7942_0370 0.82 -1.0 364,858 + metY Synpcc7942_0370 0.84 -0.6 364,928 + metY Synpcc7942_0370 0.89 -0.2 364,936 - metY Synpcc7942_0370 0.90 +1.2 364,936 - metY Synpcc7942_0370 0.90 -0.3 364,959 - -0.5 364,966 + -0.7 364,971 - +0.3 364,989 + -1.0 364,999 + -0.8 365,008 + +0.6 365,008 - -1.5 365,009 + +1.6 365,013 + -0.7 365,019 + -0.0 365,030 + -1.0 365,041 + -0.6 365,071 + +0.0 365,084 - +1.0 365,099 + -0.2 365,114 - -0.4 365,187 - -0.4 365,248 - metA Synpcc7942_0371 0.15 +0.0 365,257 - metA Synpcc7942_0371 0.16 -1.1 365,287 + metA Synpcc7942_0371 0.19 -0.9 365,297 - metA Synpcc7942_0371 0.20 -0.5 365,317 + metA Synpcc7942_0371 0.22 -1.6 365,360 - metA Synpcc7942_0371 0.27 -0.4 365,387 - metA Synpcc7942_0371 0.30 +1.6 365,428 - -0.0 365,477 + metA Synpcc7942_0371 0.40 -1.8 365,485 - metA Synpcc7942_0371 0.41 -2.1 365,507 + metA Synpcc7942_0371 0.43 -0.7 365,764 - metA Synpcc7942_0371 0.72 -0.6 365,773 + metA Synpcc7942_0371 0.73 +1.6 365,805 - metA Synpcc7942_0371 0.77 -0.4 365,819 - metA Synpcc7942_0371 0.78 -0.1 365,827 - metA Synpcc7942_0371 0.79 -1.2 365,945 + -0.3 365,954 + -0.5 366,175 - Synpcc7942_0372 0.15 -0.3 366,186 - Synpcc7942_0372 0.17 +1.6 366,218 - Synpcc7942_0372 0.21 -1.2 366,233 - Synpcc7942_0372 0.22 +0.0 366,246 - Synpcc7942_0372 0.24 +0.1 366,280 + Synpcc7942_0372 0.28 +0.1 366,340 - Synpcc7942_0372 0.36 +0.0 366,403 - Synpcc7942_0372 0.44 -0.9 366,420 - Synpcc7942_0372 0.46 +0.6 366,432 - Synpcc7942_0372 0.47 +0.6 366,452 + Synpcc7942_0372 0.50 -0.3 366,490 - Synpcc7942_0372 0.55 +0.6 366,518 - Synpcc7942_0372 0.58 +1.6 366,526 - Synpcc7942_0372 0.59 -0.5 366,529 + Synpcc7942_0372 0.59 +0.6 366,537 - Synpcc7942_0372 0.60 +0.4 366,641 + Synpcc7942_0372 0.73 +1.9 366,641 + Synpcc7942_0372 0.73 -1.3 366,641 + Synpcc7942_0372 0.73 +0.6 366,649 - Synpcc7942_0372 0.74 -1.7 366,649 - Synpcc7942_0372 0.74 +1.2 366,649 - Synpcc7942_0372 0.74 -0.4 366,649 - Synpcc7942_0372 0.74 -0.6 366,649 - Synpcc7942_0372 0.74 -0.1 366,684 + Synpcc7942_0372 0.79 -1.6 366,685 + Synpcc7942_0372 0.79 -1.1 366,720 + Synpcc7942_0372 0.83 -0.1 366,720 + Synpcc7942_0372 0.83 -0.8 366,730 + Synpcc7942_0372 0.85 +0.5 366,742 + -1.2 366,742 + +0.0 366,742 + +1.0 366,742 + +0.1 366,750 - +0.8 366,776 + -1.6 366,788 + +0.3 366,789 + -0.1 366,799 - -1.0 366,820 + +0.0 366,847 + -0.4 366,847 + -0.2 366,847 + -0.8 367,009 - Synpcc7942_0373 0.21 +1.2
Or see this region's nucleotide sequence