Experiment: 15:15 LD cycle bioreactor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0363 and Synpcc7942_0364 are separated by 71 nucleotides Synpcc7942_0364 and Synpcc7942_0365 are separated by 259 nucleotides Synpcc7942_0365 and ltnT are separated by 243 nucleotides
Synpcc7942_0363: Synpcc7942_0363 - hypothetical protein, at 355,509 to 355,793
_0363
Synpcc7942_0364: Synpcc7942_0364 - hypothetical protein, at 355,865 to 356,416
_0364
Synpcc7942_0365: Synpcc7942_0365 - response regulator receiver domain protein (CheY-like), at 356,676 to 357,305
_0365
Synpcc7942_0366: ltnT - putative sulfate transporter, at 357,549 to 359,732
ltnT
Position (kb) 356
357
358 Strain fitness (log2 ratio) -2
-1
0
1
2 at 355.704 kb on - strand, within Synpcc7942_0363 at 355.709 kb on - strand, within Synpcc7942_0363 at 355.719 kb on - strand, within Synpcc7942_0363 at 355.734 kb on - strand, within Synpcc7942_0363 at 355.762 kb on - strand, within Synpcc7942_0363 at 355.859 kb on - strand at 355.924 kb on - strand, within Synpcc7942_0364 at 355.942 kb on - strand, within Synpcc7942_0364 at 355.956 kb on + strand, within Synpcc7942_0364 at 355.962 kb on + strand, within Synpcc7942_0364 at 355.964 kb on - strand, within Synpcc7942_0364 at 355.970 kb on - strand, within Synpcc7942_0364 at 356.001 kb on + strand, within Synpcc7942_0364 at 356.022 kb on + strand, within Synpcc7942_0364 at 356.032 kb on - strand, within Synpcc7942_0364 at 356.049 kb on - strand, within Synpcc7942_0364 at 356.051 kb on - strand, within Synpcc7942_0364 at 356.085 kb on + strand at 356.085 kb on + strand, within Synpcc7942_0364 at 356.101 kb on + strand, within Synpcc7942_0364 at 356.104 kb on - strand, within Synpcc7942_0364 at 356.104 kb on - strand, within Synpcc7942_0364 at 356.104 kb on - strand, within Synpcc7942_0364 at 356.126 kb on - strand, within Synpcc7942_0364 at 356.128 kb on - strand, within Synpcc7942_0364 at 356.138 kb on - strand, within Synpcc7942_0364 at 356.142 kb on - strand, within Synpcc7942_0364 at 356.203 kb on - strand, within Synpcc7942_0364 at 356.205 kb on - strand, within Synpcc7942_0364 at 356.209 kb on - strand, within Synpcc7942_0364 at 356.213 kb on + strand, within Synpcc7942_0364 at 356.229 kb on + strand, within Synpcc7942_0364 at 356.229 kb on + strand, within Synpcc7942_0364 at 356.230 kb on + strand, within Synpcc7942_0364 at 356.237 kb on - strand, within Synpcc7942_0364 at 356.237 kb on - strand, within Synpcc7942_0364 at 356.245 kb on + strand, within Synpcc7942_0364 at 356.274 kb on - strand, within Synpcc7942_0364 at 356.281 kb on - strand, within Synpcc7942_0364 at 356.285 kb on + strand, within Synpcc7942_0364 at 356.287 kb on + strand, within Synpcc7942_0364 at 356.291 kb on - strand, within Synpcc7942_0364 at 356.293 kb on - strand, within Synpcc7942_0364 at 356.293 kb on - strand, within Synpcc7942_0364 at 356.293 kb on - strand, within Synpcc7942_0364 at 356.332 kb on + strand, within Synpcc7942_0364 at 356.332 kb on + strand, within Synpcc7942_0364 at 356.332 kb on + strand, within Synpcc7942_0364 at 356.332 kb on + strand, within Synpcc7942_0364 at 356.335 kb on + strand, within Synpcc7942_0364 at 356.340 kb on - strand, within Synpcc7942_0364 at 356.340 kb on - strand, within Synpcc7942_0364 at 356.402 kb on - strand at 356.411 kb on + strand at 356.419 kb on - strand at 356.459 kb on - strand at 356.459 kb on - strand at 356.482 kb on - strand at 356.482 kb on - strand at 356.486 kb on + strand at 356.633 kb on + strand at 356.666 kb on + strand at 356.666 kb on + strand at 356.674 kb on - strand at 356.674 kb on - strand at 356.681 kb on - strand at 356.734 kb on - strand at 356.747 kb on - strand, within Synpcc7942_0365 at 356.764 kb on + strand, within Synpcc7942_0365 at 356.764 kb on + strand, within Synpcc7942_0365 at 356.774 kb on + strand, within Synpcc7942_0365 at 356.779 kb on + strand, within Synpcc7942_0365 at 356.794 kb on - strand at 356.799 kb on + strand, within Synpcc7942_0365 at 356.873 kb on + strand, within Synpcc7942_0365 at 356.883 kb on + strand, within Synpcc7942_0365 at 356.884 kb on + strand, within Synpcc7942_0365 at 356.892 kb on - strand, within Synpcc7942_0365 at 356.892 kb on - strand, within Synpcc7942_0365 at 357.001 kb on + strand, within Synpcc7942_0365 at 357.006 kb on - strand, within Synpcc7942_0365 at 357.008 kb on + strand, within Synpcc7942_0365 at 357.016 kb on - strand, within Synpcc7942_0365 at 357.040 kb on - strand, within Synpcc7942_0365 at 357.040 kb on - strand, within Synpcc7942_0365 at 357.043 kb on + strand, within Synpcc7942_0365 at 357.052 kb on - strand, within Synpcc7942_0365 at 357.083 kb on - strand, within Synpcc7942_0365 at 357.092 kb on - strand, within Synpcc7942_0365 at 357.111 kb on + strand at 357.119 kb on - strand, within Synpcc7942_0365 at 357.130 kb on + strand, within Synpcc7942_0365 at 357.132 kb on + strand, within Synpcc7942_0365 at 357.143 kb on + strand, within Synpcc7942_0365 at 357.225 kb on - strand, within Synpcc7942_0365 at 357.243 kb on + strand at 357.249 kb on + strand at 357.266 kb on + strand at 357.266 kb on + strand at 357.266 kb on + strand at 357.273 kb on + strand at 357.274 kb on - strand at 357.274 kb on - strand at 357.274 kb on - strand at 357.296 kb on + strand at 357.296 kb on + strand at 357.304 kb on - strand at 357.352 kb on - strand at 357.447 kb on + strand at 357.454 kb on + strand at 357.454 kb on + strand at 357.454 kb on + strand at 357.459 kb on + strand at 357.459 kb on + strand at 357.466 kb on + strand at 357.466 kb on + strand at 357.467 kb on - strand at 357.481 kb on - strand at 357.504 kb on + strand at 357.512 kb on - strand at 357.512 kb on - strand at 357.530 kb on + strand at 357.556 kb on + strand at 357.556 kb on + strand at 357.564 kb on - strand at 357.570 kb on - strand at 357.579 kb on + strand at 357.581 kb on + strand at 357.582 kb on - strand at 357.582 kb on - strand at 357.594 kb on - strand at 357.620 kb on + strand at 357.627 kb on + strand at 357.635 kb on - strand at 357.635 kb on - strand at 357.691 kb on - strand at 357.717 kb on + strand at 357.717 kb on + strand at 357.717 kb on + strand at 357.722 kb on - strand at 357.725 kb on - strand at 357.725 kb on - strand at 357.725 kb on - strand at 357.725 kb on - strand at 357.770 kb on + strand, within ltnT at 357.770 kb on + strand, within ltnT at 357.773 kb on - strand, within ltnT at 357.778 kb on - strand, within ltnT at 357.778 kb on - strand, within ltnT at 357.778 kb on - strand, within ltnT at 357.800 kb on + strand, within ltnT at 357.808 kb on - strand, within ltnT at 357.848 kb on + strand, within ltnT at 357.851 kb on - strand, within ltnT at 357.851 kb on - strand at 357.851 kb on - strand, within ltnT at 357.882 kb on + strand, within ltnT at 357.882 kb on - strand, within ltnT at 357.897 kb on + strand, within ltnT at 357.897 kb on + strand, within ltnT at 357.913 kb on + strand, within ltnT at 357.913 kb on + strand, within ltnT at 357.913 kb on + strand, within ltnT at 357.913 kb on + strand, within ltnT at 357.921 kb on - strand, within ltnT at 357.921 kb on - strand, within ltnT at 357.921 kb on - strand, within ltnT at 357.931 kb on + strand at 357.951 kb on - strand, within ltnT at 358.023 kb on - strand, within ltnT at 358.033 kb on + strand, within ltnT at 358.034 kb on + strand, within ltnT at 358.072 kb on + strand, within ltnT at 358.072 kb on + strand, within ltnT at 358.072 kb on + strand, within ltnT at 358.072 kb on + strand, within ltnT at 358.072 kb on + strand, within ltnT at 358.072 kb on + strand, within ltnT at 358.072 kb on + strand, within ltnT at 358.080 kb on - strand, within ltnT at 358.080 kb on - strand, within ltnT at 358.080 kb on - strand, within ltnT at 358.080 kb on - strand, within ltnT at 358.082 kb on + strand, within ltnT at 358.082 kb on + strand, within ltnT at 358.090 kb on - strand, within ltnT at 358.090 kb on - strand, within ltnT at 358.090 kb on - strand, within ltnT at 358.126 kb on + strand, within ltnT at 358.145 kb on + strand, within ltnT at 358.175 kb on + strand, within ltnT at 358.180 kb on + strand, within ltnT at 358.183 kb on - strand, within ltnT at 358.188 kb on - strand, within ltnT at 358.193 kb on - strand, within ltnT at 358.210 kb on + strand, within ltnT at 358.210 kb on + strand, within ltnT at 358.215 kb on + strand, within ltnT at 358.218 kb on - strand, within ltnT at 358.225 kb on + strand, within ltnT at 358.230 kb on + strand, within ltnT at 358.233 kb on - strand, within ltnT at 358.235 kb on + strand, within ltnT at 358.236 kb on + strand, within ltnT at 358.238 kb on - strand, within ltnT at 358.243 kb on + strand, within ltnT
Per-strain Table
Position Strand Gene LocusTag Fraction 15:15 LD cycle bioreactor remove 355,704 - Synpcc7942_0363 0.68 -0.7 355,709 - Synpcc7942_0363 0.70 -0.6 355,719 - Synpcc7942_0363 0.74 -1.7 355,734 - Synpcc7942_0363 0.79 -1.0 355,762 - Synpcc7942_0363 0.89 -1.8 355,859 - -0.6 355,924 - Synpcc7942_0364 0.11 +0.1 355,942 - Synpcc7942_0364 0.14 +0.3 355,956 + Synpcc7942_0364 0.16 -0.4 355,962 + Synpcc7942_0364 0.18 +0.6 355,964 - Synpcc7942_0364 0.18 -0.3 355,970 - Synpcc7942_0364 0.19 +0.7 356,001 + Synpcc7942_0364 0.25 -0.9 356,022 + Synpcc7942_0364 0.28 +0.2 356,032 - Synpcc7942_0364 0.30 -0.7 356,049 - Synpcc7942_0364 0.33 -0.3 356,051 - Synpcc7942_0364 0.34 +1.6 356,085 + -0.3 356,085 + Synpcc7942_0364 0.40 -1.5 356,101 + Synpcc7942_0364 0.43 -1.1 356,104 - Synpcc7942_0364 0.43 -1.0 356,104 - Synpcc7942_0364 0.43 +0.9 356,104 - Synpcc7942_0364 0.43 +0.6 356,126 - Synpcc7942_0364 0.47 -1.3 356,128 - Synpcc7942_0364 0.48 +0.0 356,138 - Synpcc7942_0364 0.49 +0.6 356,142 - Synpcc7942_0364 0.50 +1.6 356,203 - Synpcc7942_0364 0.61 -1.0 356,205 - Synpcc7942_0364 0.62 -0.4 356,209 - Synpcc7942_0364 0.62 -1.1 356,213 + Synpcc7942_0364 0.63 +0.4 356,229 + Synpcc7942_0364 0.66 +0.2 356,229 + Synpcc7942_0364 0.66 +1.0 356,230 + Synpcc7942_0364 0.66 -0.3 356,237 - Synpcc7942_0364 0.67 -2.2 356,237 - Synpcc7942_0364 0.67 -1.8 356,245 + Synpcc7942_0364 0.69 +0.9 356,274 - Synpcc7942_0364 0.74 +0.3 356,281 - Synpcc7942_0364 0.75 -1.4 356,285 + Synpcc7942_0364 0.76 -1.2 356,287 + Synpcc7942_0364 0.76 -0.3 356,291 - Synpcc7942_0364 0.77 -0.2 356,293 - Synpcc7942_0364 0.78 +0.8 356,293 - Synpcc7942_0364 0.78 -1.1 356,293 - Synpcc7942_0364 0.78 -1.7 356,332 + Synpcc7942_0364 0.85 -0.1 356,332 + Synpcc7942_0364 0.85 +0.0 356,332 + Synpcc7942_0364 0.85 -1.3 356,332 + Synpcc7942_0364 0.85 +0.0 356,335 + Synpcc7942_0364 0.85 +0.5 356,340 - Synpcc7942_0364 0.86 +0.6 356,340 - Synpcc7942_0364 0.86 +0.4 356,402 - -0.4 356,411 + -1.5 356,419 - +0.6 356,459 - -0.1 356,459 - +1.4 356,482 - +1.2 356,482 - +0.0 356,486 + -0.4 356,633 + -0.2 356,666 + -0.7 356,666 + -1.0 356,674 - +0.1 356,674 - +1.2 356,681 - +0.6 356,734 - -0.2 356,747 - Synpcc7942_0365 0.11 -0.7 356,764 + Synpcc7942_0365 0.14 +0.0 356,764 + Synpcc7942_0365 0.14 -0.2 356,774 + Synpcc7942_0365 0.16 -1.0 356,779 + Synpcc7942_0365 0.16 -0.9 356,794 - -0.6 356,799 + Synpcc7942_0365 0.20 -0.7 356,873 + Synpcc7942_0365 0.31 -0.7 356,883 + Synpcc7942_0365 0.33 -1.5 356,884 + Synpcc7942_0365 0.33 -0.3 356,892 - Synpcc7942_0365 0.34 +1.3 356,892 - Synpcc7942_0365 0.34 -1.4 357,001 + Synpcc7942_0365 0.52 -1.6 357,006 - Synpcc7942_0365 0.52 -2.4 357,008 + Synpcc7942_0365 0.53 -1.2 357,016 - Synpcc7942_0365 0.54 +0.0 357,040 - Synpcc7942_0365 0.58 +1.6 357,040 - Synpcc7942_0365 0.58 -0.2 357,043 + Synpcc7942_0365 0.58 -0.2 357,052 - Synpcc7942_0365 0.60 -0.6 357,083 - Synpcc7942_0365 0.65 +0.6 357,092 - Synpcc7942_0365 0.66 -0.1 357,111 + -0.1 357,119 - Synpcc7942_0365 0.70 -1.2 357,130 + Synpcc7942_0365 0.72 -0.2 357,132 + Synpcc7942_0365 0.72 -1.0 357,143 + Synpcc7942_0365 0.74 -0.7 357,225 - Synpcc7942_0365 0.87 +2.0 357,243 + +0.6 357,249 + +0.2 357,266 + -0.3 357,266 + -1.0 357,266 + +1.6 357,273 + +0.6 357,274 - -0.6 357,274 - +0.4 357,274 - -0.4 357,296 + -0.5 357,296 + -1.2 357,304 - +0.1 357,352 - +0.0 357,447 + -0.2 357,454 + -0.8 357,454 + +0.3 357,454 + +0.7 357,459 + +0.1 357,459 + +0.6 357,466 + -1.2 357,466 + -1.3 357,467 - -0.2 357,481 - -0.5 357,504 + -0.4 357,512 - -0.4 357,512 - -0.2 357,530 + -1.5 357,556 + +1.0 357,556 + +2.2 357,564 - -2.4 357,570 - -1.4 357,579 + +2.0 357,581 + -0.9 357,582 - +1.3 357,582 - -1.2 357,594 - -1.3 357,620 + -0.1 357,627 + +0.5 357,635 - -0.4 357,635 - -0.2 357,691 - +1.1 357,717 + +1.6 357,717 + +1.6 357,717 + -0.6 357,722 - -0.1 357,725 - -0.7 357,725 - -0.5 357,725 - -0.1 357,725 - -0.1 357,770 + ltnT Synpcc7942_0366 0.10 -1.0 357,770 + ltnT Synpcc7942_0366 0.10 +0.6 357,773 - ltnT Synpcc7942_0366 0.10 -1.3 357,778 - ltnT Synpcc7942_0366 0.10 +0.3 357,778 - ltnT Synpcc7942_0366 0.10 -0.7 357,778 - ltnT Synpcc7942_0366 0.10 +0.3 357,800 + ltnT Synpcc7942_0366 0.11 -1.7 357,808 - ltnT Synpcc7942_0366 0.12 -0.8 357,848 + ltnT Synpcc7942_0366 0.14 -0.7 357,851 - ltnT Synpcc7942_0366 0.14 -0.2 357,851 - -0.8 357,851 - ltnT Synpcc7942_0366 0.14 +0.0 357,882 + ltnT Synpcc7942_0366 0.15 +1.6 357,882 - ltnT Synpcc7942_0366 0.15 +0.6 357,897 + ltnT Synpcc7942_0366 0.16 -0.4 357,897 + ltnT Synpcc7942_0366 0.16 -0.1 357,913 + ltnT Synpcc7942_0366 0.17 +0.0 357,913 + ltnT Synpcc7942_0366 0.17 -0.6 357,913 + ltnT Synpcc7942_0366 0.17 +1.0 357,913 + ltnT Synpcc7942_0366 0.17 +0.6 357,921 - ltnT Synpcc7942_0366 0.17 +0.3 357,921 - ltnT Synpcc7942_0366 0.17 -0.8 357,921 - ltnT Synpcc7942_0366 0.17 +0.2 357,931 + +1.6 357,951 - ltnT Synpcc7942_0366 0.18 -0.1 358,023 - ltnT Synpcc7942_0366 0.22 -0.3 358,033 + ltnT Synpcc7942_0366 0.22 -1.1 358,034 + ltnT Synpcc7942_0366 0.22 +0.5 358,072 + ltnT Synpcc7942_0366 0.24 -1.2 358,072 + ltnT Synpcc7942_0366 0.24 +0.3 358,072 + ltnT Synpcc7942_0366 0.24 -0.4 358,072 + ltnT Synpcc7942_0366 0.24 -0.5 358,072 + ltnT Synpcc7942_0366 0.24 -0.1 358,072 + ltnT Synpcc7942_0366 0.24 -0.4 358,072 + ltnT Synpcc7942_0366 0.24 +0.9 358,080 - ltnT Synpcc7942_0366 0.24 +0.4 358,080 - ltnT Synpcc7942_0366 0.24 +0.8 358,080 - ltnT Synpcc7942_0366 0.24 -1.1 358,080 - ltnT Synpcc7942_0366 0.24 +2.6 358,082 + ltnT Synpcc7942_0366 0.24 -1.8 358,082 + ltnT Synpcc7942_0366 0.24 +0.6 358,090 - ltnT Synpcc7942_0366 0.25 +0.6 358,090 - ltnT Synpcc7942_0366 0.25 -1.4 358,090 - ltnT Synpcc7942_0366 0.25 +0.0 358,126 + ltnT Synpcc7942_0366 0.26 +0.3 358,145 + ltnT Synpcc7942_0366 0.27 -0.5 358,175 + ltnT Synpcc7942_0366 0.29 -1.1 358,180 + ltnT Synpcc7942_0366 0.29 +0.0 358,183 - ltnT Synpcc7942_0366 0.29 -0.4 358,188 - ltnT Synpcc7942_0366 0.29 +0.2 358,193 - ltnT Synpcc7942_0366 0.29 +0.4 358,210 + ltnT Synpcc7942_0366 0.30 -2.5 358,210 + ltnT Synpcc7942_0366 0.30 +0.2 358,215 + ltnT Synpcc7942_0366 0.30 +0.6 358,218 - ltnT Synpcc7942_0366 0.31 +0.6 358,225 + ltnT Synpcc7942_0366 0.31 -1.1 358,230 + ltnT Synpcc7942_0366 0.31 -1.2 358,233 - ltnT Synpcc7942_0366 0.31 +0.0 358,235 + ltnT Synpcc7942_0366 0.31 -1.0 358,236 + ltnT Synpcc7942_0366 0.31 -0.5 358,238 - ltnT Synpcc7942_0366 0.32 -1.5 358,243 + ltnT Synpcc7942_0366 0.32 -0.4
Or see this region's nucleotide sequence