Experiment: 15:15 LD cycle bioreactor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0053 and Synpcc7942_0054 are separated by 70 nucleotides Synpcc7942_0054 and Synpcc7942_0055 are separated by 32 nucleotides Synpcc7942_0055 and rfbE are separated by 34 nucleotides
Synpcc7942_0053: Synpcc7942_0053 - hypothetical protein, at 55,204 to 56,352
_0053
Synpcc7942_0054: Synpcc7942_0054 - hypothetical protein, at 56,423 to 57,190
_0054
Synpcc7942_0055: Synpcc7942_0055 - hypothetical protein, at 57,223 to 57,906
_0055
Synpcc7942_0056: rfbE - perosamine synthetase, at 57,941 to 59,068
rfbE
Position (kb) 57
58 Strain fitness (log2 ratio) -1
0
1
2 at 56.256 kb on + strand at 56.268 kb on + strand at 56.294 kb on - strand at 56.302 kb on - strand at 56.556 kb on + strand, within Synpcc7942_0054 at 56.564 kb on - strand, within Synpcc7942_0054 at 56.564 kb on - strand, within Synpcc7942_0054 at 56.683 kb on - strand, within Synpcc7942_0054 at 56.694 kb on - strand, within Synpcc7942_0054 at 56.809 kb on - strand, within Synpcc7942_0054 at 56.881 kb on + strand, within Synpcc7942_0054 at 56.953 kb on + strand, within Synpcc7942_0054 at 56.961 kb on - strand, within Synpcc7942_0054 at 57.014 kb on + strand, within Synpcc7942_0054 at 57.014 kb on - strand, within Synpcc7942_0054 at 57.022 kb on - strand, within Synpcc7942_0054 at 57.147 kb on + strand at 57.278 kb on + strand at 57.329 kb on - strand, within Synpcc7942_0055 at 57.386 kb on + strand, within Synpcc7942_0055 at 57.483 kb on - strand, within Synpcc7942_0055 at 57.528 kb on - strand, within Synpcc7942_0055 at 57.687 kb on - strand, within Synpcc7942_0055 at 58.021 kb on + strand at 58.064 kb on + strand, within rfbE at 58.067 kb on - strand, within rfbE at 58.071 kb on + strand, within rfbE at 58.221 kb on - strand, within rfbE at 58.258 kb on + strand at 58.276 kb on - strand, within rfbE at 58.484 kb on + strand, within rfbE at 58.545 kb on + strand, within rfbE at 58.568 kb on + strand, within rfbE at 58.706 kb on + strand, within rfbE at 58.717 kb on + strand, within rfbE at 58.828 kb on + strand, within rfbE at 58.864 kb on - strand, within rfbE at 58.884 kb on - strand, within rfbE
Per-strain Table
Position Strand Gene LocusTag Fraction 15:15 LD cycle bioreactor remove 56,256 + +0.4 56,268 + -0.0 56,294 - +0.3 56,302 - -1.3 56,556 + Synpcc7942_0054 0.17 -0.6 56,564 - Synpcc7942_0054 0.18 +0.6 56,564 - Synpcc7942_0054 0.18 +1.0 56,683 - Synpcc7942_0054 0.34 +0.5 56,694 - Synpcc7942_0054 0.35 +0.9 56,809 - Synpcc7942_0054 0.50 +0.0 56,881 + Synpcc7942_0054 0.60 +0.6 56,953 + Synpcc7942_0054 0.69 -0.4 56,961 - Synpcc7942_0054 0.70 -1.6 57,014 + Synpcc7942_0054 0.77 -0.7 57,014 - Synpcc7942_0054 0.77 +0.3 57,022 - Synpcc7942_0054 0.78 +0.0 57,147 + -0.9 57,278 + +0.6 57,329 - Synpcc7942_0055 0.15 -1.4 57,386 + Synpcc7942_0055 0.24 -0.7 57,483 - Synpcc7942_0055 0.38 -0.7 57,528 - Synpcc7942_0055 0.45 +0.8 57,687 - Synpcc7942_0055 0.68 +0.6 58,021 + -0.8 58,064 + rfbE Synpcc7942_0056 0.11 +2.3 58,067 - rfbE Synpcc7942_0056 0.11 +0.6 58,071 + rfbE Synpcc7942_0056 0.12 +1.0 58,221 - rfbE Synpcc7942_0056 0.25 -0.4 58,258 + -0.2 58,276 - rfbE Synpcc7942_0056 0.30 +1.6 58,484 + rfbE Synpcc7942_0056 0.48 -0.8 58,545 + rfbE Synpcc7942_0056 0.54 -0.9 58,568 + rfbE Synpcc7942_0056 0.56 -1.7 58,706 + rfbE Synpcc7942_0056 0.68 -0.4 58,717 + rfbE Synpcc7942_0056 0.69 +0.3 58,828 + rfbE Synpcc7942_0056 0.79 +0.0 58,864 - rfbE Synpcc7942_0056 0.82 -0.8 58,884 - rfbE Synpcc7942_0056 0.84 -0.9
Or see this region's nucleotide sequence