Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS21630

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
4,874,308	+				+1.7
4,874,308	+				+0.2
4,874,309	-				-0.8
4,874,422	-				+0.2
4,874,507	+		PFLU_RS21625	0.18	-0.4
4,874,507	+		PFLU_RS21625	0.18	+2.5
4,874,508	-		PFLU_RS21625	0.18	+0.3
4,874,508	-		PFLU_RS21625	0.18	-0.8
4,874,508	-		PFLU_RS21625	0.18	+0.9
4,874,508	-		PFLU_RS21625	0.18	-0.4
4,874,511	+		PFLU_RS21625	0.18	-1.0
4,874,511	+		PFLU_RS21625	0.18	-1.3
4,874,511	+		PFLU_RS21625	0.18	-1.5
4,874,511	+		PFLU_RS21625	0.18	-0.5
4,874,511	+		PFLU_RS21625	0.18	-0.3
4,874,511	+		PFLU_RS21625	0.18	-1.6
4,874,511	+		PFLU_RS21625	0.18	-2.1
4,874,511	+		PFLU_RS21625	0.18	+2.1
4,874,511	+		PFLU_RS21625	0.18	+0.6
4,874,511	+		PFLU_RS21625	0.18	+0.1
4,874,511	+		PFLU_RS21625	0.18	+0.2
4,874,511	+		PFLU_RS21625	0.18	-2.8
4,874,511	+		PFLU_RS21625	0.18	-1.4
4,874,512	-		PFLU_RS21625	0.19	-1.5
4,874,512	-		PFLU_RS21625	0.19	-0.9
4,874,512	-		PFLU_RS21625	0.19	-0.5
4,874,512	-		PFLU_RS21625	0.19	-0.6
4,874,512	-		PFLU_RS21625	0.19	-1.6
4,874,512	-		PFLU_RS21625	0.19	-1.2
4,874,512	-		PFLU_RS21625	0.19	-0.8
4,874,512	-		PFLU_RS21625	0.19	-0.8
4,874,512	-		PFLU_RS21625	0.19	-0.1
4,874,512	-		PFLU_RS21625	0.19	+0.3
4,874,512	-		PFLU_RS21625	0.19	-1.8
4,874,549	+		PFLU_RS21625	0.23	-0.3
4,874,549	+		PFLU_RS21625	0.23	+0.7
4,874,610	+		PFLU_RS21625	0.31	-0.5
4,874,610	+		PFLU_RS21625	0.31	+0.8
4,874,610	+		PFLU_RS21625	0.31	+1.3
4,874,610	+		PFLU_RS21625	0.31	+0.2
4,874,610	+		PFLU_RS21625	0.31	+0.5
4,874,610	+		PFLU_RS21625	0.31	+0.6
4,874,626	+		PFLU_RS21625	0.33	+0.7
4,874,662	+		PFLU_RS21625	0.38	-1.1
4,874,662	+		PFLU_RS21625	0.38	-1.6
4,874,662	+		PFLU_RS21625	0.38	-1.7
4,874,663	-		PFLU_RS21625	0.38	-0.5
4,874,773	+		PFLU_RS21625	0.52	-2.4
4,874,976	+		PFLU_RS21625	0.77	-1.0
4,874,976	+		PFLU_RS21625	0.77	-1.4
4,874,976	+		PFLU_RS21625	0.77	+0.5
4,874,976	+		PFLU_RS21625	0.77	+1.4
4,874,976	+		PFLU_RS21625	0.77	+0.9
4,874,977	-		PFLU_RS21625	0.77	-1.2
4,874,977	-		PFLU_RS21625	0.77	+0.1
4,874,977	-		PFLU_RS21625	0.77	-0.0
4,874,977	-		PFLU_RS21625	0.77	-0.2
4,874,977	-		PFLU_RS21625	0.77	+0.6
4,874,977	-		PFLU_RS21625	0.77	-0.2
4,875,007	-		PFLU_RS21625	0.81	-0.2
4,875,015	+		PFLU_RS21625	0.82	-1.9
4,875,015	+		PFLU_RS21625	0.82	-1.2
4,875,015	+		PFLU_RS21625	0.82	-1.3
4,875,015	+		PFLU_RS21625	0.82	+0.6
4,875,015	+		PFLU_RS21625	0.82	+0.8
4,875,015	+		PFLU_RS21625	0.82	-0.4
4,875,015	+		PFLU_RS21625	0.82	+0.5
4,875,016	-		PFLU_RS21625	0.82	+0.5
4,875,016	-		PFLU_RS21625	0.82	-0.6
4,875,016	-		PFLU_RS21625	0.82	+1.2
4,875,016	-		PFLU_RS21625	0.82	-0.6
4,875,016	-		PFLU_RS21625	0.82	+0.3
4,875,201	+				+1.3
4,875,201	+				+0.9
4,875,201	+				-0.8
4,875,201	+				-0.4
4,875,201	+				-0.8
4,875,201	+				-1.4
4,875,201	+				-1.0
4,875,201	+				+1.6
4,875,201	+				-0.5
4,875,201	+				-0.1
4,875,201	+				-0.6
4,875,201	+				+1.4
4,875,201	+				+1.0
4,875,201	+				+1.2
4,875,201	+				+0.2
4,875,201	+				+0.0
4,875,201	+				+0.4
4,875,201	+				-0.7
4,875,201	+				-1.4
4,875,201	+				+1.9
4,875,201	+				-1.0
4,875,202	-				-0.2
4,875,202	-				+0.3
4,875,202	-				+1.0
4,875,202	-				-0.0
4,875,202	-				-0.9
4,875,202	-				+2.5
4,875,202	-				-0.0
4,875,202	-				-0.2
4,875,202	-				+0.7
4,875,202	-				+0.3
4,875,202	-				-0.4
4,875,202	-				-1.1
4,875,202	-				+1.2
4,875,202	-				-0.8
4,875,202	-				+1.0
4,875,202	-				+2.8
4,875,202	-				-1.8
4,875,202	-				+1.5
4,875,202	-				-0.7
4,875,206	+				+1.5
4,875,206	+				-0.9
4,875,207	-				+0.3
4,875,346	+		PFLU_RS21630	0.16	-0.3
4,875,346	+		PFLU_RS21630	0.16	-0.3
4,875,346	+		PFLU_RS21630	0.16	+0.7
4,875,346	+		PFLU_RS21630	0.16	-0.2
4,875,346	+		PFLU_RS21630	0.16	+1.5
4,875,346	+		PFLU_RS21630	0.16	-0.7
4,875,347	-		PFLU_RS21630	0.16	+0.3
4,875,347	-		PFLU_RS21630	0.16	+0.1
4,875,347	-		PFLU_RS21630	0.16	-0.8
4,875,347	-		PFLU_RS21630	0.16	+0.4
4,875,347	-		PFLU_RS21630	0.16	+0.3
4,875,347	-		PFLU_RS21630	0.16	-1.0
4,875,347	-		PFLU_RS21630	0.16	-1.5
4,875,347	-		PFLU_RS21630	0.16	-1.6
4,875,347	-		PFLU_RS21630	0.16	+0.2
4,875,347	-		PFLU_RS21630	0.16	+0.8
4,875,571	-		PFLU_RS21630	0.41	-1.2
4,875,571	-		PFLU_RS21630	0.41	-0.5
4,875,636	+		PFLU_RS21630	0.49	-0.2
4,875,636	+		PFLU_RS21630	0.49	-0.1
4,875,636	+		PFLU_RS21630	0.49	+0.1
4,875,637	-		PFLU_RS21630	0.49	-0.7
4,875,747	+		PFLU_RS21630	0.61	-0.6
4,875,747	+		PFLU_RS21630	0.61	-1.0
4,875,747	+		PFLU_RS21630	0.61	+0.6
4,875,748	-		PFLU_RS21630	0.61	-0.5
4,875,748	-		PFLU_RS21630	0.61	+0.3
4,875,956	+		PFLU_RS21630	0.85	-2.7
4,875,956	+		PFLU_RS21630	0.85	-1.0
4,875,956	+		PFLU_RS21630	0.85	-1.0
4,875,956	+		PFLU_RS21630	0.85	-1.4
4,875,956	+		PFLU_RS21630	0.85	-0.8
4,875,956	+		PFLU_RS21630	0.85	-1.6
4,875,956	+		PFLU_RS21630	0.85	-0.6
4,875,956	+		PFLU_RS21630	0.85	-1.3
4,875,956	+		PFLU_RS21630	0.85	-0.4
4,875,957	-		PFLU_RS21630	0.85	+0.6
4,875,957	-		PFLU_RS21630	0.85	+2.5
4,875,957	-		PFLU_RS21630	0.85	-0.8
4,875,957	-		PFLU_RS21630	0.85	-0.0
4,875,957	-		PFLU_RS21630	0.85	-2.9
4,875,957	-		PFLU_RS21630	0.85	+0.2
4,875,957	-		PFLU_RS21630	0.85	-0.2
4,875,986	+		PFLU_RS21630	0.88	+1.8
4,875,986	+		PFLU_RS21630	0.88	-2.0
4,875,986	+		PFLU_RS21630	0.88	+0.5
4,875,986	+		PFLU_RS21630	0.88	+0.2
4,875,986	+		PFLU_RS21630	0.88	-0.1
4,875,986	+		PFLU_RS21630	0.88	-0.8
4,875,986	+		PFLU_RS21630	0.88	-0.5
4,875,986	+		PFLU_RS21630	0.88	+0.1
4,875,986	+		PFLU_RS21630	0.88	+2.4
4,875,986	+		PFLU_RS21630	0.88	+1.4
4,875,986	+		PFLU_RS21630	0.88	-0.4
4,875,986	+		PFLU_RS21630	0.88	+0.2
4,875,986	+		PFLU_RS21630	0.88	-0.3
4,875,986	+		PFLU_RS21630	0.88	+0.6
4,875,986	+		PFLU_RS21630	0.88	-1.3
4,875,986	+		PFLU_RS21630	0.88	-0.4
4,875,986	+		PFLU_RS21630	0.88	+0.2
4,875,986	+		PFLU_RS21630	0.88	-1.0
4,875,987	-		PFLU_RS21630	0.88	+0.6
4,875,987	-		PFLU_RS21630	0.88	+0.3
4,875,987	-		PFLU_RS21630	0.88	-1.6
4,875,987	-		PFLU_RS21630	0.88	-0.7
4,875,987	-		PFLU_RS21630	0.88	-0.1
4,875,987	-		PFLU_RS21630	0.88	-1.3
4,875,987	-		PFLU_RS21630	0.88	-0.3
4,875,987	-		PFLU_RS21630	0.88	-0.6
4,875,987	-		PFLU_RS21630	0.88	-0.1
4,875,987	-		PFLU_RS21630	0.88	-2.2
4,875,987	-		PFLU_RS21630	0.88	+1.3
4,875,987	-		PFLU_RS21630	0.88	-0.8
4,875,987	-		PFLU_RS21630	0.88	+0.3
4,875,987	-		PFLU_RS21630	0.88	-0.6
4,876,031	+				+0.7
4,876,032	-				+0.4
4,876,100	+				+0.5
4,876,100	+				-0.0
4,876,100	+				-0.1
4,876,100	+				-0.8
4,876,100	+				-2.2
4,876,100	+				+0.3
4,876,100	+				+0.5
4,876,100	+				-2.1
4,876,100	+				-1.8
4,876,100	+				-1.5
4,876,101	-				-0.8
4,876,101	-				-1.4
4,876,101	-				+0.8
4,876,101	-				-0.7
4,876,101	-				-0.8
4,876,101	-				-1.4
4,876,101	-				-1.6
4,876,101	-				+0.8
4,876,101	-				-0.1
4,876,101	-				+0.3
4,876,101	-				-0.5
4,876,101	-				+1.8
4,876,101	-				-0.4
4,876,101	-				-0.7
4,876,101	-				-0.2
4,876,101	-				-0.2
4,876,227	+		PFLU_RS31755	0.69	-1.6
4,876,227	+		PFLU_RS31755	0.69	-0.9
4,876,273	+				-1.2
4,876,273	+				-1.1
4,876,273	+				+0.6
4,876,273	+				-0.6
4,876,273	+				-1.5
4,876,273	+				-1.4
4,876,274	-				+0.2
4,876,274	-				-0.6
4,876,274	-				-0.8
4,876,274	-				-0.6
4,876,274	-				-1.1
4,876,277	+				-0.4
4,876,277	+				-1.7
4,876,277	+				-1.0
4,876,277	+				+0.3
4,876,277	+				-1.5
4,876,278	-				-0.8
4,876,278	-				+0.9
4,876,278	-				+1.0
4,876,278	-				+0.0
4,876,278	-				-2.3
4,876,278	-				+0.1
4,876,278	-				+0.9
4,876,278	-				-0.3
4,876,278	-				-0.9
4,876,458	+		PFLU_RS21635	0.23	+0.6
4,876,458	+		PFLU_RS21635	0.23	-2.4
4,876,459	-		PFLU_RS21635	0.23	+0.8
4,876,459	-		PFLU_RS21635	0.23	-2.3
4,876,459	-		PFLU_RS21635	0.23	-0.5
4,876,459	-		PFLU_RS21635	0.23	-1.9
4,876,459	-		PFLU_RS21635	0.23	-0.7
4,876,558	+		PFLU_RS21635	0.36	+0.7
4,876,558	+		PFLU_RS21635	0.36	-0.1
4,876,632	+		PFLU_RS21635	0.46	-1.0
4,876,632	+		PFLU_RS21635	0.46	-0.1
4,876,632	+		PFLU_RS21635	0.46	+0.6
4,876,632	+		PFLU_RS21635	0.46	+1.0
4,876,632	+		PFLU_RS21635	0.46	+1.8
4,876,632	+		PFLU_RS21635	0.46	-0.3
4,876,632	+		PFLU_RS21635	0.46	+0.5
4,876,633	-		PFLU_RS21635	0.46	+1.6
4,876,633	-		PFLU_RS21635	0.46	+0.9
4,876,633	-		PFLU_RS21635	0.46	-0.6
4,876,633	-		PFLU_RS21635	0.46	-1.5
4,876,710	+		PFLU_RS21635	0.57	-0.2
4,876,710	+		PFLU_RS21635	0.57	+0.3
4,876,710	+		PFLU_RS21635	0.57	-1.1
4,876,710	+		PFLU_RS21635	0.57	-0.9
4,876,968	+				-1.3
4,876,968	+				+2.1
4,876,968	+				-1.4
4,876,968	+				+0.1
4,876,968	+				-1.0
4,876,968	+				-0.0
4,876,968	+				+1.5
4,876,968	+				-1.7
4,876,968	+				-1.0
4,876,969	-				+1.1
4,876,969	-				-0.6
4,876,969	-				-2.0
4,876,969	-				-2.5
4,876,969	-				-2.0
4,876,969	-				+0.3
4,876,969	-				-0.6
4,877,021	+				+0.8
4,877,021	+				-0.7
4,877,021	+				-1.7
4,877,021	+				-0.8
4,877,021	+				-0.4
4,877,021	+				-0.8
4,877,021	+				-1.6
4,877,021	+				-2.0
4,877,021	+				-0.3
4,877,021	+				-0.8
4,877,021	+				-0.4
4,877,021	+				-1.3
4,877,021	+				-2.0
4,877,021	+				+0.1
4,877,021	+				+0.6
4,877,021	+				+0.8
4,877,021	+				+0.5
4,877,021	+				-0.8
4,877,021	+				-2.1
4,877,021	+				-2.1
4,877,022	-				-1.0
4,877,022	-				-1.8
4,877,022	-				+0.4
4,877,022	-				-0.9
4,877,022	-				-1.8
4,877,022	-				-0.8
4,877,022	-				-0.0
4,877,022	-				-0.6
4,877,022	-				+0.8
4,877,022	-				+1.3
4,877,022	-				+0.7
4,877,022	-				-1.9
4,877,022	-				+1.2
4,877,022	-				+0.2
4,877,022	-				-1.8
4,877,022	-				-0.7
4,877,022	-				-1.8
4,877,022	-				-0.5
4,877,022	-				+0.8
4,877,022	-				-0.4
4,877,022	-				-0.6
4,877,075	+				-0.7
4,877,076	-				-3.1
4,877,076	-				+0.3
4,877,076	-				-0.6