Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS19130

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
4,325,129	+		PFLU_RS19125	0.63	+0.3
4,325,129	+		PFLU_RS19125	0.63	-0.6
4,325,129	+		PFLU_RS19125	0.63	-1.3
4,325,129	+		PFLU_RS19125	0.63	-0.0
4,325,129	+		PFLU_RS19125	0.63	-0.4
4,325,129	+		PFLU_RS19125	0.63	+2.3
4,325,130	-		PFLU_RS19125	0.63	+1.5
4,325,130	-		PFLU_RS19125	0.63	-0.9
4,325,130	-		PFLU_RS19125	0.63	-1.9
4,325,130	-		PFLU_RS19125	0.63	-0.7
4,325,132	+		PFLU_RS19125	0.63	-1.3
4,325,132	+		PFLU_RS19125	0.63	+1.4
4,325,132	+		PFLU_RS19125	0.63	-0.5
4,325,132	+		PFLU_RS19125	0.63	-1.0
4,325,132	+		PFLU_RS19125	0.63	+0.3
4,325,132	+		PFLU_RS19125	0.63	+0.8
4,325,132	+		PFLU_RS19125	0.63	-0.1
4,325,132	+		PFLU_RS19125	0.63	-1.3
4,325,132	+		PFLU_RS19125	0.63	+0.8
4,325,132	+		PFLU_RS19125	0.63	-0.8
4,325,132	+		PFLU_RS19125	0.63	-2.6
4,325,132	+		PFLU_RS19125	0.63	+0.1
4,325,132	+		PFLU_RS19125	0.63	-1.6
4,325,133	-		PFLU_RS19125	0.63	+0.3
4,325,133	-		PFLU_RS19125	0.63	-2.1
4,325,133	-		PFLU_RS19125	0.63	-0.8
4,325,133	-		PFLU_RS19125	0.63	+0.2
4,325,133	-		PFLU_RS19125	0.63	-0.8
4,325,133	-		PFLU_RS19125	0.63	+0.7
4,325,133	-		PFLU_RS19125	0.63	-2.8
4,325,133	-		PFLU_RS19125	0.63	+1.4
4,325,133	-		PFLU_RS19125	0.63	+1.3
4,325,133	-		PFLU_RS19125	0.63	-1.9
4,325,133	-		PFLU_RS19125	0.63	+0.4
4,325,133	-		PFLU_RS19125	0.63	+0.2
4,325,133	-		PFLU_RS19125	0.63	-1.1
4,325,133	-		PFLU_RS19125	0.63	+0.9
4,325,133	-		PFLU_RS19125	0.63	+0.6
4,325,133	-		PFLU_RS19125	0.63	+1.2
4,325,133	-		PFLU_RS19125	0.63	-1.8
4,325,212	+		PFLU_RS19125	0.66	+1.9
4,325,212	+		PFLU_RS19125	0.66	+0.3
4,325,212	+		PFLU_RS19125	0.66	-0.4
4,325,213	-		PFLU_RS19125	0.66	+0.4
4,325,213	-		PFLU_RS19125	0.66	+0.8
4,325,219	+		PFLU_RS19125	0.66	+0.1
4,325,219	+		PFLU_RS19125	0.66	+2.5
4,325,252	+		PFLU_RS19125	0.67	+1.4
4,325,252	+		PFLU_RS19125	0.67	+0.6
4,325,252	+		PFLU_RS19125	0.67	-0.3
4,325,252	+		PFLU_RS19125	0.67	-0.4
4,325,253	-		PFLU_RS19125	0.67	+0.6
4,325,253	-		PFLU_RS19125	0.67	+1.8
4,325,253	-		PFLU_RS19125	0.67	+0.3
4,325,253	-		PFLU_RS19125	0.67	+0.8
4,325,253	-		PFLU_RS19125	0.67	+1.3
4,325,253	-		PFLU_RS19125	0.67	-0.9
4,325,253	-		PFLU_RS19125	0.67	+2.0
4,325,253	-		PFLU_RS19125	0.67	-0.1
4,325,254	+		PFLU_RS19125	0.67	-0.3
4,325,254	+		PFLU_RS19125	0.67	-1.2
4,325,254	+		PFLU_RS19125	0.67	+0.1
4,325,254	+		PFLU_RS19125	0.67	-0.5
4,325,254	+		PFLU_RS19125	0.67	-0.3
4,325,255	-		PFLU_RS19125	0.67	+1.4
4,325,261	+		PFLU_RS19125	0.68	-1.7
4,325,261	+		PFLU_RS19125	0.68	+2.1
4,325,261	+		PFLU_RS19125	0.68	-0.1
4,325,262	-		PFLU_RS19125	0.68	-1.2
4,325,404	+		PFLU_RS19125	0.73	+1.7
4,325,438	+		PFLU_RS19125	0.74	-1.0
4,325,456	+		PFLU_RS19125	0.75	-1.4
4,325,473	+		PFLU_RS19125	0.75	-1.0
4,325,473	+		PFLU_RS19125	0.75	+0.1
4,325,474	-		PFLU_RS19125	0.76	+0.5
4,325,485	+		PFLU_RS19125	0.76	-1.7
4,325,485	+		PFLU_RS19125	0.76	+0.1
4,325,486	-		PFLU_RS19125	0.76	-0.9
4,325,486	-		PFLU_RS19125	0.76	-1.5
4,325,486	-		PFLU_RS19125	0.76	-0.2
4,325,486	-		PFLU_RS19125	0.76	+2.3
4,325,498	+		PFLU_RS19125	0.76	-0.1
4,325,498	+		PFLU_RS19125	0.76	+0.0
4,325,498	+		PFLU_RS19125	0.76	+1.9
4,325,498	+		PFLU_RS19125	0.76	-1.3
4,325,498	+		PFLU_RS19125	0.76	+1.4
4,325,498	+		PFLU_RS19125	0.76	-1.1
4,325,498	+		PFLU_RS19125	0.76	-0.8
4,325,498	+		PFLU_RS19125	0.76	+0.8
4,325,498	+		PFLU_RS19125	0.76	+1.4
4,325,498	+		PFLU_RS19125	0.76	-1.4
4,325,498	+		PFLU_RS19125	0.76	+0.2
4,325,498	+		PFLU_RS19125	0.76	-0.5
4,325,498	+		PFLU_RS19125	0.76	+2.2
4,325,498	+		PFLU_RS19125	0.76	-0.8
4,325,498	+		PFLU_RS19125	0.76	-0.7
4,325,498	+		PFLU_RS19125	0.76	-0.5
4,325,498	+		PFLU_RS19125	0.76	+0.2
4,325,498	+		PFLU_RS19125	0.76	-1.9
4,325,498	+		PFLU_RS19125	0.76	+0.8
4,325,498	+		PFLU_RS19125	0.76	+1.1
4,325,498	+		PFLU_RS19125	0.76	+0.5
4,325,498	+		PFLU_RS19125	0.76	-0.6
4,325,498	+		PFLU_RS19125	0.76	-1.3
4,325,498	+		PFLU_RS19125	0.76	-1.8
4,325,499	-		PFLU_RS19125	0.76	-1.3
4,325,499	-		PFLU_RS19125	0.76	-1.9
4,325,499	-		PFLU_RS19125	0.76	+0.8
4,325,499	-		PFLU_RS19125	0.76	+1.1
4,325,499	-		PFLU_RS19125	0.76	+1.8
4,325,499	-		PFLU_RS19125	0.76	+1.2
4,325,499	-		PFLU_RS19125	0.76	-1.5
4,325,499	-		PFLU_RS19125	0.76	-1.0
4,325,499	-		PFLU_RS19125	0.76	+0.3
4,325,499	-		PFLU_RS19125	0.76	+0.3
4,325,499	-		PFLU_RS19125	0.76	-1.1
4,325,499	-		PFLU_RS19125	0.76	-1.3
4,325,499	-		PFLU_RS19125	0.76	-0.4
4,325,499	-		PFLU_RS19125	0.76	-0.4
4,325,499	-		PFLU_RS19125	0.76	+0.9
4,325,499	-		PFLU_RS19125	0.76	+0.8
4,325,499	-		PFLU_RS19125	0.76	-0.8
4,325,499	-		PFLU_RS19125	0.76	+1.8
4,325,499	-		PFLU_RS19125	0.76	-1.5
4,325,499	-		PFLU_RS19125	0.76	-0.2
4,325,499	-		PFLU_RS19125	0.76	+0.9
4,325,499	-		PFLU_RS19125	0.76	-1.7
4,325,499	-		PFLU_RS19125	0.76	-1.5
4,325,499	-		PFLU_RS19125	0.76	-1.2
4,325,499	-		PFLU_RS19125	0.76	-0.8
4,325,499	-		PFLU_RS19125	0.76	-0.4
4,325,519	+		PFLU_RS19125	0.77	+0.3
4,325,519	+		PFLU_RS19125	0.77	-1.2
4,325,519	+		PFLU_RS19125	0.77	+0.4
4,325,519	+		PFLU_RS19125	0.77	-0.4
4,325,519	+		PFLU_RS19125	0.77	+3.0
4,325,519	+		PFLU_RS19125	0.77	+3.1
4,325,519	+		PFLU_RS19125	0.77	-0.9
4,325,519	+		PFLU_RS19125	0.77	-0.4
4,325,519	+		PFLU_RS19125	0.77	-1.2
4,325,519	+		PFLU_RS19125	0.77	+0.8
4,325,520	-		PFLU_RS19125	0.77	+0.0
4,325,520	-		PFLU_RS19125	0.77	+1.4
4,325,520	-		PFLU_RS19125	0.77	+0.1
4,325,520	-		PFLU_RS19125	0.77	-0.6
4,325,520	-		PFLU_RS19125	0.77	-0.2
4,325,520	-		PFLU_RS19125	0.77	+0.9
4,325,520	-		PFLU_RS19125	0.77	+0.9
4,325,520	-		PFLU_RS19125	0.77	-0.0
4,325,520	-		PFLU_RS19125	0.77	-0.7
4,325,520	-		PFLU_RS19125	0.77	-1.1
4,325,522	+		PFLU_RS19125	0.77	+0.6
4,325,522	+		PFLU_RS19125	0.77	-1.2
4,325,523	-		PFLU_RS19125	0.77	+1.3
4,325,523	-		PFLU_RS19125	0.77	-0.5
4,325,523	-		PFLU_RS19125	0.77	+0.5
4,325,523	-		PFLU_RS19125	0.77	-1.0
4,325,523	-		PFLU_RS19125	0.77	-0.9
4,325,523	-		PFLU_RS19125	0.77	+1.6
4,325,523	-		PFLU_RS19125	0.77	-1.2
4,325,525	+		PFLU_RS19125	0.77	+0.3
4,325,525	+		PFLU_RS19125	0.77	+0.6
4,325,525	+		PFLU_RS19125	0.77	+1.4
4,325,525	+		PFLU_RS19125	0.77	-0.6
4,325,525	+		PFLU_RS19125	0.77	+0.6
4,325,525	+		PFLU_RS19125	0.77	-2.1
4,325,525	+		PFLU_RS19125	0.77	+1.2
4,325,525	+		PFLU_RS19125	0.77	+0.4
4,325,525	+		PFLU_RS19125	0.77	+2.1
4,325,525	+		PFLU_RS19125	0.77	+1.1
4,325,525	+		PFLU_RS19125	0.77	-0.7
4,325,525	+		PFLU_RS19125	0.77	-1.2
4,325,525	+		PFLU_RS19125	0.77	-0.7
4,325,525	+		PFLU_RS19125	0.77	+1.8
4,325,525	+		PFLU_RS19125	0.77	+0.6
4,325,525	+		PFLU_RS19125	0.77	+0.9
4,325,526	-		PFLU_RS19125	0.77	+0.2
4,325,526	-		PFLU_RS19125	0.77	+0.2
4,325,526	-		PFLU_RS19125	0.77	-1.8
4,325,526	-		PFLU_RS19125	0.77	-0.3
4,325,526	-		PFLU_RS19125	0.77	+2.3
4,325,526	-		PFLU_RS19125	0.77	-1.3
4,325,526	-		PFLU_RS19125	0.77	-0.7
4,325,526	-		PFLU_RS19125	0.77	-1.4
4,325,526	-		PFLU_RS19125	0.77	-0.4
4,325,526	-		PFLU_RS19125	0.77	+0.5
4,325,526	-		PFLU_RS19125	0.77	-1.4
4,325,526	-		PFLU_RS19125	0.77	+0.3
4,325,526	-		PFLU_RS19125	0.77	-0.3
4,325,526	-		PFLU_RS19125	0.77	+0.4
4,325,526	-		PFLU_RS19125	0.77	-1.1
4,325,526	-		PFLU_RS19125	0.77	+0.1
4,325,526	-		PFLU_RS19125	0.77	-0.1
4,325,526	-		PFLU_RS19125	0.77	-1.4
4,325,549	+		PFLU_RS19125	0.78	-1.1
4,325,816	+		PFLU_RS19125	0.88	-1.2
4,325,816	+		PFLU_RS19125	0.88	-0.2
4,325,816	+		PFLU_RS19125	0.88	-1.4
4,325,816	+		PFLU_RS19125	0.88	-0.2
4,325,816	+		PFLU_RS19125	0.88	-0.2
4,325,816	+		PFLU_RS19125	0.88	-2.5
4,325,816	+		PFLU_RS19125	0.88	-0.4
4,325,817	-		PFLU_RS19125	0.88	-1.4
4,325,817	-		PFLU_RS19125	0.88	+0.2
4,325,817	-		PFLU_RS19125	0.88	+0.6
4,325,817	-		PFLU_RS19125	0.88	-2.4
4,325,817	-		PFLU_RS19125	0.88	-0.8
4,325,817	-		PFLU_RS19125	0.88	+1.9
4,325,817	-		PFLU_RS19125	0.88	-0.4
4,325,817	-		PFLU_RS19125	0.88	-0.9
4,325,817	-		PFLU_RS19125	0.88	-0.1
4,325,870	+				-2.0
4,325,870	+				-0.0
4,325,870	+				-1.8
4,325,871	-				-0.2
4,325,871	-				-0.6
4,325,871	-				+0.2
4,325,871	-				+2.6
4,325,871	-				+0.6
4,325,871	-				+0.7
4,325,871	-				-0.6
4,325,991	+				+0.3
4,325,992	-				+2.8
4,325,992	-				-0.0
4,325,992	-				+0.6
4,325,992	-				-1.7
4,325,992	-				+1.2
4,325,992	-				+0.3
4,326,128	-				-0.3
4,326,128	-				-1.7
4,326,320	+		PFLU_RS19130	0.25	+1.2
4,326,321	-		PFLU_RS19130	0.25	-0.1
4,326,321	-		PFLU_RS19130	0.25	-2.4
4,326,363	-		PFLU_RS19130	0.30	-0.3
4,326,415	+		PFLU_RS19130	0.37	-1.8
4,326,415	+		PFLU_RS19130	0.37	+1.1
4,326,415	+		PFLU_RS19130	0.37	-0.2
4,326,415	+		PFLU_RS19130	0.37	-0.0
4,326,416	-		PFLU_RS19130	0.37	-1.9
4,326,557	-		PFLU_RS19130	0.55	-0.3
4,326,677	+		PFLU_RS19130	0.70	+0.4
4,326,716	-		PFLU_RS19130	0.75	+1.0
4,326,716	-		PFLU_RS19130	0.75	-0.3
4,326,716	-		PFLU_RS19130	0.75	+0.8
4,326,716	-		PFLU_RS19130	0.75	+1.5
4,326,716	-		PFLU_RS19130	0.75	-1.1
4,326,716	-		PFLU_RS19130	0.75	-1.1
4,326,820	+		PFLU_RS19130	0.89	+0.4
4,326,820	+		PFLU_RS19130	0.89	-1.2
4,326,820	+		PFLU_RS19130	0.89	+1.4
4,326,820	+		PFLU_RS19130	0.89	+1.9
4,326,820	+		PFLU_RS19130	0.89	-0.5
4,326,820	+		PFLU_RS19130	0.89	-0.4
4,326,820	+		PFLU_RS19130	0.89	+0.4
4,326,820	+		PFLU_RS19130	0.89	+0.5
4,326,820	+		PFLU_RS19130	0.89	-2.4
4,326,820	+		PFLU_RS19130	0.89	-0.6
4,326,820	+		PFLU_RS19130	0.89	-1.8
4,326,820	+		PFLU_RS19130	0.89	-0.0
4,326,820	+		PFLU_RS19130	0.89	-2.2
4,326,820	+		PFLU_RS19130	0.89	+0.2
4,326,821	-		PFLU_RS19130	0.89	+1.6
4,326,821	-		PFLU_RS19130	0.89	-1.3
4,326,821	-		PFLU_RS19130	0.89	+0.3
4,326,821	-		PFLU_RS19130	0.89	-0.3
4,326,821	-		PFLU_RS19130	0.89	-0.4
4,326,821	-		PFLU_RS19130	0.89	+0.9
4,326,821	-		PFLU_RS19130	0.89	-0.5
4,326,821	-		PFLU_RS19130	0.89	+0.8
4,326,821	-		PFLU_RS19130	0.89	+1.1
4,326,821	-		PFLU_RS19130	0.89	-1.6
4,326,821	-		PFLU_RS19130	0.89	-0.7
4,326,824	+		PFLU_RS19130	0.89	-1.5
4,326,884	+				+1.8
4,326,885	-				-0.5
4,326,885	-				-1.2
4,326,892	+				-0.1
4,326,893	-				+0.8
4,327,015	+				-0.5
4,327,036	+				+0.6
4,327,036	+				-0.7
4,327,036	+				-1.4
4,327,036	+				-0.1
4,327,036	+				+0.8
4,327,036	+				-1.2
4,327,036	+				-1.3
4,327,036	+				+0.4
4,327,036	+				+0.1
4,327,036	+				-0.6
4,327,036	+				-0.7
4,327,036	+				-0.0
4,327,036	+				-0.3
4,327,036	+				+0.8
4,327,036	+				+1.8
4,327,036	+				-0.2
4,327,037	-				+0.3
4,327,037	-				-1.4
4,327,037	-				+0.4
4,327,037	-				-1.8
4,327,037	-				-0.2
4,327,037	-				-1.0
4,327,037	-				-0.7
4,327,037	-				-0.5
4,327,037	-				-0.5
4,327,037	-				-0.2
4,327,037	-				-0.7
4,327,037	-				+0.0
4,327,037	-				-0.3
4,327,037	-				-0.7
4,327,037	-				+1.8
4,327,037	-				-0.9
4,327,037	-				+0.4
4,327,037	-				-0.8
4,327,037	-				+1.1
4,327,037	-				-0.9
4,327,046	-				-1.1
4,327,046	-				-0.3
4,327,088	+		PFLU_RS19135	0.10	+0.1
4,327,088	+		PFLU_RS19135	0.10	+1.0
4,327,088	+		PFLU_RS19135	0.10	+0.1
4,327,089	-		PFLU_RS19135	0.10	+0.5
4,327,089	-		PFLU_RS19135	0.10	+2.4
4,327,173	+		PFLU_RS19135	0.19	-1.2
4,327,173	+		PFLU_RS19135	0.19	+0.0
4,327,173	+		PFLU_RS19135	0.19	-0.7
4,327,173	+		PFLU_RS19135	0.19	+0.6
4,327,173	+		PFLU_RS19135	0.19	+0.4
4,327,173	+		PFLU_RS19135	0.19	-0.4
4,327,173	+		PFLU_RS19135	0.19	-0.0
4,327,173	+		PFLU_RS19135	0.19	-1.4
4,327,173	+		PFLU_RS19135	0.19	+0.5
4,327,174	-		PFLU_RS19135	0.20	-1.4
4,327,174	-		PFLU_RS19135	0.20	-0.2
4,327,174	-		PFLU_RS19135	0.20	-1.2
4,327,174	-		PFLU_RS19135	0.20	-0.7
4,327,174	-		PFLU_RS19135	0.20	+1.1
4,327,174	-		PFLU_RS19135	0.20	-0.9
4,327,174	-		PFLU_RS19135	0.20	-1.7
4,327,392	+		PFLU_RS19135	0.44	-0.3
4,327,392	+		PFLU_RS19135	0.44	-1.7
4,327,422	+		PFLU_RS19135	0.47	+0.3
4,327,423	-		PFLU_RS19135	0.47	-0.5
4,327,423	-		PFLU_RS19135	0.47	-0.2
4,327,423	-		PFLU_RS19135	0.47	+0.6
4,327,423	-		PFLU_RS19135	0.47	+0.9
4,327,423	-		PFLU_RS19135	0.47	+0.4
4,327,423	-		PFLU_RS19135	0.47	+0.2
4,327,423	-		PFLU_RS19135	0.47	+1.6
4,327,513	+		PFLU_RS19135	0.57	-0.6
4,327,513	+		PFLU_RS19135	0.57	-2.6
4,327,513	+		PFLU_RS19135	0.57	+1.5
4,327,514	-		PFLU_RS19135	0.57	-1.3
4,327,514	-		PFLU_RS19135	0.57	+0.2
4,327,561	+		PFLU_RS19135	0.63	-1.1
4,327,616	+		PFLU_RS19135	0.69	-0.8
4,327,617	-		PFLU_RS19135	0.69	-1.6
4,327,617	-		PFLU_RS19135	0.69	-1.9