Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS17200

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
3,909,160	+				+0.9
3,909,161	-				+1.1
3,909,161	-				+1.9
3,909,241	+				+0.8
3,909,242	-				-1.2
3,909,286	+				+0.1
3,909,286	+				+0.0
3,909,286	+				+0.0
3,909,287	-				-0.5
3,909,287	-				+1.0
3,909,500	+		PFLU_RS17195	0.28	-1.9
3,909,678	+		PFLU_RS17195	0.48	-1.1
3,909,679	-		PFLU_RS17195	0.48	+1.2
3,909,717	+		PFLU_RS17195	0.53	-0.2
3,909,777	+		PFLU_RS17195	0.59	+0.2
3,909,778	-		PFLU_RS17195	0.59	-1.6
3,910,032	-		PFLU_RS17195	0.88	-1.9
3,910,127	+				+0.3
3,910,127	+				+0.1
3,910,127	+				+2.9
3,910,127	+				+0.0
3,910,127	+				+2.4
3,910,128	-				+1.0
3,910,128	-				-0.6
3,910,128	-				+0.8
3,910,128	-				+0.2
3,910,128	-				-0.4
3,910,128	-				-1.5
3,910,128	-				+2.3
3,910,128	-				+0.4
3,910,131	+				-2.6
3,910,131	+				+0.4
3,910,131	+				+1.2
3,910,131	+				-1.6
3,910,131	+				-0.1
3,910,131	+				-1.8
3,910,131	+				+0.1
3,910,131	+				-2.2
3,910,131	+				-1.3
3,910,132	-				-1.2
3,910,132	-				+3.1
3,910,132	-				-0.5
3,910,132	-				-0.8
3,910,132	-				+0.2
3,910,132	-				+4.3
3,910,175	+				-0.9
3,910,176	-				-0.4
3,910,428	+		PFLU_RS17200	0.21	+0.8
3,910,428	+		PFLU_RS17200	0.21	-1.0
3,910,428	+		PFLU_RS17200	0.21	+2.2
3,910,429	-		PFLU_RS17200	0.21	-0.8
3,910,432	+		PFLU_RS17200	0.22	-0.7
3,910,433	-		PFLU_RS17200	0.22	+0.8
3,910,433	-		PFLU_RS17200	0.22	+1.2
3,910,547	+		PFLU_RS17200	0.30	+1.8
3,910,548	-		PFLU_RS17200	0.30	-0.1
3,910,548	-		PFLU_RS17200	0.30	+0.2
3,910,548	-		PFLU_RS17200	0.30	-0.2
3,910,650	+		PFLU_RS17200	0.38	+0.4
3,910,650	+		PFLU_RS17200	0.38	-2.1
3,910,697	-		PFLU_RS17200	0.41	+2.7
3,910,922	+		PFLU_RS17200	0.58	+0.0
3,910,922	+		PFLU_RS17200	0.58	+0.2
3,910,923	-		PFLU_RS17200	0.58	+0.2
3,910,923	-		PFLU_RS17200	0.58	-0.8
3,910,939	+		PFLU_RS17200	0.59	-1.2
3,910,939	+		PFLU_RS17200	0.59	-0.1
3,910,939	+		PFLU_RS17200	0.59	+0.9
3,910,939	+		PFLU_RS17200	0.59	+0.9
3,910,940	-		PFLU_RS17200	0.59	+0.2
3,910,941	+		PFLU_RS17200	0.59	-1.0
3,910,941	+		PFLU_RS17200	0.59	+0.7
3,910,941	+		PFLU_RS17200	0.59	+0.6
3,910,941	+		PFLU_RS17200	0.59	+0.4
3,910,941	+		PFLU_RS17200	0.59	+0.5
3,910,941	+		PFLU_RS17200	0.59	-0.5
3,910,941	+		PFLU_RS17200	0.59	-0.1
3,910,941	+		PFLU_RS17200	0.59	+0.9
3,910,941	+		PFLU_RS17200	0.59	-0.8
3,910,941	+		PFLU_RS17200	0.59	-0.8
3,910,941	+		PFLU_RS17200	0.59	-0.8
3,910,942	-		PFLU_RS17200	0.60	+0.4
3,910,942	-		PFLU_RS17200	0.60	+0.0
3,910,942	-		PFLU_RS17200	0.60	-1.8
3,910,942	-		PFLU_RS17200	0.60	-0.7
3,910,942	-		PFLU_RS17200	0.60	+0.5
3,911,010	+		PFLU_RS17200	0.65	-0.1
3,911,010	+		PFLU_RS17200	0.65	-0.8
3,911,010	+		PFLU_RS17200	0.65	+2.6
3,911,011	-		PFLU_RS17200	0.65	+0.5
3,911,011	-		PFLU_RS17200	0.65	-0.0
3,911,011	-		PFLU_RS17200	0.65	-0.2
3,911,011	-		PFLU_RS17200	0.65	+0.1
3,911,011	-		PFLU_RS17200	0.65	+0.1
3,911,021	+		PFLU_RS17200	0.65	+1.3
3,911,021	+		PFLU_RS17200	0.65	-1.7
3,911,021	+		PFLU_RS17200	0.65	-0.4
3,911,022	-		PFLU_RS17200	0.65	-1.7
3,911,022	-		PFLU_RS17200	0.65	-1.3
3,911,022	-		PFLU_RS17200	0.65	-0.4
3,911,187	+		PFLU_RS17200	0.78	-0.6
3,911,188	-		PFLU_RS17200	0.78	+0.1
3,911,472	+				+1.6
3,911,472	+				+0.5
3,911,485	+				-0.3
3,911,485	+				+0.8
3,911,485	+				-0.6
3,911,485	+				+0.9
3,911,486	-				-0.3
3,911,486	-				+0.3
3,911,486	-				-0.9
3,911,489	+				-0.5
3,911,489	+				-2.0
3,911,489	+				-0.1
3,911,489	+				-0.8
3,911,489	+				-1.3
3,911,489	+				-0.3
3,911,489	+				+1.1
3,911,489	+				-0.2
3,911,489	+				+0.7
3,911,489	+				-1.3
3,911,489	+				-0.7
3,911,489	+				+1.3
3,911,489	+				-0.1
3,911,489	+				+0.0
3,911,489	+				+0.7
3,911,489	+				+0.6
3,911,489	+				-0.4
3,911,489	+				-0.5
3,911,490	-				+1.7
3,911,490	-				+0.7
3,911,490	-				-0.3
3,911,490	-				+1.6
3,911,490	-				-1.3
3,911,490	-				+0.7
3,911,490	-				+0.8
3,911,490	-				+0.5
3,911,490	-				+0.0
3,911,490	-				-1.7
3,911,490	-				+0.1
3,911,490	-				-0.7
3,911,490	-				-0.3
3,911,490	-				+0.2
3,911,490	-				-1.0
3,911,490	-				+1.5
3,911,490	-				-0.8
3,911,490	-				+0.6
3,911,596	+				-1.5
3,911,597	-				-1.3
3,911,731	+				-1.6
3,911,740	+				+0.5
3,911,740	+				-0.9
3,911,741	-				-1.1
3,911,957	-		PFLU_RS17205	0.14	-1.2
3,911,957	-		PFLU_RS17205	0.14	+1.0
3,912,052	-		PFLU_RS17205	0.18	-0.8
3,912,106	+		PFLU_RS17205	0.20	+0.9
3,912,106	+		PFLU_RS17205	0.20	+0.0
3,912,107	-		PFLU_RS17205	0.20	+0.7
3,912,107	-		PFLU_RS17205	0.20	-0.0
3,912,107	-		PFLU_RS17205	0.20	-1.1
3,912,110	+		PFLU_RS17205	0.20	-1.0
3,912,238	+		PFLU_RS17205	0.25	+0.2
3,912,238	+		PFLU_RS17205	0.25	-1.1
3,912,238	+		PFLU_RS17205	0.25	-0.1
3,912,238	+		PFLU_RS17205	0.25	-0.6
3,912,239	-		PFLU_RS17205	0.25	-1.7
3,912,239	-		PFLU_RS17205	0.25	-0.3
3,912,239	-		PFLU_RS17205	0.25	-1.7
3,912,239	-		PFLU_RS17205	0.25	+1.3
3,912,239	-		PFLU_RS17205	0.25	-0.4
3,912,239	-		PFLU_RS17205	0.25	+0.7
3,912,239	-		PFLU_RS17205	0.25	-1.1
3,912,255	-		PFLU_RS17205	0.26	-0.9
3,912,275	+		PFLU_RS17205	0.27	-0.6
3,912,275	+		PFLU_RS17205	0.27	-0.3
3,912,276	-		PFLU_RS17205	0.27	+0.1
3,912,276	-		PFLU_RS17205	0.27	-1.1
3,912,276	-		PFLU_RS17205	0.27	-1.6
3,912,284	+		PFLU_RS17205	0.27	+1.4
3,912,285	-		PFLU_RS17205	0.27	+0.5
3,912,370	+		PFLU_RS17205	0.31	-0.8
3,912,370	+		PFLU_RS17205	0.31	-1.0
3,912,370	+		PFLU_RS17205	0.31	+1.5
3,912,371	-		PFLU_RS17205	0.31	-0.7
3,912,371	-		PFLU_RS17205	0.31	-0.6
3,912,371	-		PFLU_RS17205	0.31	-1.0