Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS09770

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
2,152,405	+		PFLU_RS09765	0.11	-0.4
2,152,413	+		PFLU_RS09765	0.12	+1.5
2,152,540	+		PFLU_RS09765	0.28	-0.7
2,152,585	+		PFLU_RS09765	0.34	-0.9
2,152,622	-		PFLU_RS09765	0.39	-0.3
2,152,624	+		PFLU_RS09765	0.40	+1.3
2,152,625	-		PFLU_RS09765	0.40	-1.2
2,152,625	-		PFLU_RS09765	0.40	+0.2
2,152,639	-		PFLU_RS09765	0.42	-0.7
2,152,643	+		PFLU_RS09765	0.42	-0.3
2,152,720	-		PFLU_RS09765	0.52	+2.2
2,152,720	-		PFLU_RS09765	0.52	-1.7
2,152,768	-		PFLU_RS09765	0.59	-0.1
2,152,805	+		PFLU_RS09765	0.63	-1.7
2,152,830	+		PFLU_RS09765	0.67	+1.1
2,152,852	+		PFLU_RS09765	0.70	+0.4
2,152,852	+		PFLU_RS09765	0.70	+0.0
2,152,871	+		PFLU_RS09765	0.72	+0.1
2,152,871	+		PFLU_RS09765	0.72	+0.8
2,152,871	+		PFLU_RS09765	0.72	+0.2
2,152,871	+		PFLU_RS09765	0.72	-0.0
2,152,872	-		PFLU_RS09765	0.72	-0.8
2,152,882	+		PFLU_RS09765	0.74	-0.7
2,152,897	-		PFLU_RS09765	0.76	-0.9
2,152,940	+		PFLU_RS09765	0.81	+0.9
2,152,940	+		PFLU_RS09765	0.81	-0.8
2,152,940	+		PFLU_RS09765	0.81	+0.5
2,152,944	+		PFLU_RS09765	0.82	-0.0
2,152,982	+		PFLU_RS09765	0.87	-0.2
2,152,983	-		PFLU_RS09765	0.87	-1.2
2,153,009	-				+0.5
2,153,040	+				+0.2
2,153,041	-				+0.3
2,153,041	-				+2.2
2,153,041	-				-0.4
2,153,081	-				-0.1
2,153,142	+				+0.9
2,153,146	+				+0.2
2,153,147	-				+0.3
2,153,153	-				+1.0
2,153,205	-				-0.9
2,153,208	-				-1.1
2,153,247	+				+0.3
2,153,248	-				+1.0
2,153,248	-				+0.8
2,153,280	-				-1.4
2,153,335	+				+1.4
2,153,336	-				+0.4
2,153,336	-				-1.4
2,153,336	-				+1.2
2,153,363	+				-0.7
2,153,363	+				+1.0
2,153,364	-				+1.2
2,153,405	+				+0.8
2,153,450	+		PFLU_RS09770	0.16	-1.5
2,153,454	+		PFLU_RS09770	0.17	-1.4
2,153,454	+		PFLU_RS09770	0.17	-0.0
2,153,454	+		PFLU_RS09770	0.17	+1.2
2,153,455	-		PFLU_RS09770	0.17	-0.8
2,153,455	-		PFLU_RS09770	0.17	+2.0
2,153,459	+		PFLU_RS09770	0.17	-1.4
2,153,460	-		PFLU_RS09770	0.17	-0.4
2,153,460	-		PFLU_RS09770	0.17	-1.6
2,153,460	-		PFLU_RS09770	0.17	-0.2
2,153,474	+		PFLU_RS09770	0.20	-1.9
2,153,483	+		PFLU_RS09770	0.21	-0.5
2,153,483	+		PFLU_RS09770	0.21	+0.2
2,153,484	-		PFLU_RS09770	0.21	+2.0
2,153,491	+		PFLU_RS09770	0.22	-0.0
2,153,492	-		PFLU_RS09770	0.22	-0.2
2,153,492	-		PFLU_RS09770	0.22	+0.1
2,153,497	-		PFLU_RS09770	0.23	+0.4
2,153,514	+		PFLU_RS09770	0.26	+0.3
2,153,514	+		PFLU_RS09770	0.26	-1.1
2,153,514	+		PFLU_RS09770	0.26	-1.9
2,153,514	+		PFLU_RS09770	0.26	+0.1
2,153,514	+		PFLU_RS09770	0.26	+0.0
2,153,514	+		PFLU_RS09770	0.26	-0.1
2,153,514	+		PFLU_RS09770	0.26	-0.1
2,153,515	-		PFLU_RS09770	0.26	+0.0
2,153,515	-		PFLU_RS09770	0.26	+0.0
2,153,592	+		PFLU_RS09770	0.38	-1.4
2,153,592	+		PFLU_RS09770	0.38	-1.5
2,153,597	+		PFLU_RS09770	0.38	+2.1
2,153,597	+		PFLU_RS09770	0.38	+0.2
2,153,598	-		PFLU_RS09770	0.39	+2.0
2,153,607	+		PFLU_RS09770	0.40	+0.5
2,153,607	+		PFLU_RS09770	0.40	+0.2
2,153,607	+		PFLU_RS09770	0.40	-0.4
2,153,607	+		PFLU_RS09770	0.40	-1.4
2,153,607	+		PFLU_RS09770	0.40	-0.9
2,153,607	+		PFLU_RS09770	0.40	-1.0
2,153,608	-		PFLU_RS09770	0.40	-1.0
2,153,608	-		PFLU_RS09770	0.40	+0.1
2,153,608	-		PFLU_RS09770	0.40	+0.5
2,153,608	-		PFLU_RS09770	0.40	-0.8
2,153,608	-		PFLU_RS09770	0.40	-1.2
2,153,608	-		PFLU_RS09770	0.40	+1.5
2,153,608	-		PFLU_RS09770	0.40	+0.4
2,153,608	-		PFLU_RS09770	0.40	+0.8
2,153,610	-		PFLU_RS09770	0.40	+0.2
2,153,653	+		PFLU_RS09770	0.47	-1.4
2,153,653	+		PFLU_RS09770	0.47	-0.8
2,153,745	-		PFLU_RS09770	0.61	+1.2
2,153,773	+		PFLU_RS09770	0.65	+0.0
2,153,837	-		PFLU_RS09770	0.75	-1.1
2,153,866	-		PFLU_RS09770	0.80	-1.1
2,153,866	-		PFLU_RS09770	0.80	+0.0
2,153,932	-		PFLU_RS09770	0.90	+0.7
2,154,000	-				+0.8
2,154,001	+				-1.5
2,154,002	-				+1.3
2,154,091	+				+0.1
2,154,091	+				-0.7
2,154,092	-				-1.3
2,154,092	-				+0.2
2,154,092	-				-1.3
2,154,092	-				-1.1
2,154,093	+				+0.3
2,154,093	+				+0.5
2,154,094	-				+1.5
2,154,094	-				-1.3
2,154,094	-				-0.2
2,154,124	-				-0.3
2,154,261	+		PFLU_RS09775	0.12	+0.6
2,154,262	-		PFLU_RS09775	0.12	-1.7
2,154,280	+		PFLU_RS09775	0.14	-0.3
2,154,280	+		PFLU_RS09775	0.14	+1.0
2,154,281	-		PFLU_RS09775	0.14	+0.8
2,154,289	+		PFLU_RS09775	0.15	+2.1
2,154,289	+		PFLU_RS09775	0.15	+1.8
2,154,289	+		PFLU_RS09775	0.15	-0.0
2,154,298	+		PFLU_RS09775	0.16	-0.8
2,154,298	+		PFLU_RS09775	0.16	-0.5
2,154,299	-		PFLU_RS09775	0.16	-0.8
2,154,345	-		PFLU_RS09775	0.20	-0.8
2,154,376	-		PFLU_RS09775	0.23	+1.4
2,154,414	+		PFLU_RS09775	0.26	-0.1
2,154,457	+		PFLU_RS09775	0.30	+1.6
2,154,514	-		PFLU_RS09775	0.35	+0.2
2,154,546	+		PFLU_RS09775	0.38	+0.4
2,154,547	-		PFLU_RS09775	0.38	-1.2
2,154,572	+		PFLU_RS09775	0.41	-0.0
2,154,573	-		PFLU_RS09775	0.41	-0.1
2,154,573	-		PFLU_RS09775	0.41	-0.5
2,154,573	-		PFLU_RS09775	0.41	-1.1
2,154,594	+		PFLU_RS09775	0.43	-0.9
2,154,595	-		PFLU_RS09775	0.43	-1.5
2,154,664	+		PFLU_RS09775	0.49	+0.4
2,154,664	+		PFLU_RS09775	0.49	+1.2
2,154,664	+		PFLU_RS09775	0.49	-0.6
2,154,664	+		PFLU_RS09775	0.49	+0.2
2,154,664	+		PFLU_RS09775	0.49	-0.9
2,154,664	+		PFLU_RS09775	0.49	-0.0
2,154,664	+		PFLU_RS09775	0.49	+0.6
2,154,664	+		PFLU_RS09775	0.49	-0.3
2,154,664	+		PFLU_RS09775	0.49	+0.8
2,154,664	+		PFLU_RS09775	0.49	-1.5
2,154,664	+		PFLU_RS09775	0.49	-1.2
2,154,664	+		PFLU_RS09775	0.49	-0.7
2,154,664	+		PFLU_RS09775	0.49	+2.0
2,154,665	-		PFLU_RS09775	0.49	-0.0
2,154,665	-		PFLU_RS09775	0.49	-0.5
2,154,665	-		PFLU_RS09775	0.49	-0.8
2,154,665	-		PFLU_RS09775	0.49	-1.4
2,154,665	-		PFLU_RS09775	0.49	-1.0
2,154,665	-		PFLU_RS09775	0.49	+0.3
2,154,665	-		PFLU_RS09775	0.49	+1.0
2,154,665	-		PFLU_RS09775	0.49	-1.4
2,154,665	-		PFLU_RS09775	0.49	+0.9
2,154,665	-		PFLU_RS09775	0.49	+0.9
2,154,665	-		PFLU_RS09775	0.49	+0.6
2,154,665	-		PFLU_RS09775	0.49	-0.4
2,154,665	-		PFLU_RS09775	0.49	+0.7
2,154,665	-		PFLU_RS09775	0.49	+0.5
2,154,665	-		PFLU_RS09775	0.49	+0.8
2,154,665	-		PFLU_RS09775	0.49	-1.5
2,154,665	-		PFLU_RS09775	0.49	-0.4
2,154,668	+		PFLU_RS09775	0.49	+0.8
2,154,668	+		PFLU_RS09775	0.49	-0.4
2,154,669	-		PFLU_RS09775	0.49	-1.6
2,154,669	-		PFLU_RS09775	0.49	+1.5
2,154,693	+		PFLU_RS09775	0.52	-1.0
2,154,809	+		PFLU_RS09775	0.62	+0.1
2,154,809	+		PFLU_RS09775	0.62	+0.2
2,154,809	+		PFLU_RS09775	0.62	+1.0
2,154,812	+		PFLU_RS09775	0.62	-1.5
2,154,812	+		PFLU_RS09775	0.62	+0.4
2,154,812	+		PFLU_RS09775	0.62	+1.1
2,154,812	+		PFLU_RS09775	0.62	+0.8
2,154,812	+		PFLU_RS09775	0.62	+1.8
2,154,812	+		PFLU_RS09775	0.62	-0.3
2,154,813	-		PFLU_RS09775	0.62	-0.4
2,154,813	-		PFLU_RS09775	0.62	+0.1
2,154,813	-		PFLU_RS09775	0.62	-0.4
2,154,813	-		PFLU_RS09775	0.62	-1.0
2,154,813	-		PFLU_RS09775	0.62	+0.6
2,154,813	-		PFLU_RS09775	0.62	-0.4
2,154,813	-		PFLU_RS09775	0.62	-1.1
2,154,842	-		PFLU_RS09775	0.65	-1.8
2,154,842	-		PFLU_RS09775	0.65	+1.5
2,154,842	-		PFLU_RS09775	0.65	+0.8
2,154,842	-		PFLU_RS09775	0.65	+1.6
2,154,842	-		PFLU_RS09775	0.65	-1.5
2,154,979	+		PFLU_RS09775	0.78	+0.2
2,154,979	+		PFLU_RS09775	0.78	-0.3
2,154,980	-		PFLU_RS09775	0.78	+0.7
2,154,988	-		PFLU_RS09775	0.78	-1.9