Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0105

Experiment: MoLS4 with L-Cysteine as nutrient 10mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntsctV and DVUA0104.1 overlap by 4 nucleotidesDVUA0104.1 and DORF831 are separated by 2 nucleotidesDORF831 and DVUA0105 overlap by 4 nucleotidesDVUA0105 and DVUA0106 are separated by 2 nucleotides DVUA0104: sctV - type III secretion inner membrane protein, HrcV family (TIGR), at 140,328 to 142,421 sctV DVUA0104.1: DVUA0104.1 - no description, at 142,418 to 142,777 DVUA0104.1 DORF831: DORF831 - SEED: FIG00602593: hypothetical protein, at 142,780 to 143,148 DORF831 DVUA0105: DVUA0105 - conserved hypothetical protein (TIGR), at 143,145 to 143,519 DVUA0105 DVUA0106: DVUA0106 - type III secretion target, YopN family (TIGR), at 143,522 to 144,646 DVUA0106 Position (kb) 143 144Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 142.147 kb on - strand, within sctVat 142.147 kb on - strand, within sctVat 142.161 kb on + strand, within sctVat 142.169 kb on - strand, within sctVat 142.169 kb on - strand, within sctVat 142.396 kb on + strandat 142.427 kb on - strandat 142.427 kb on - strandat 142.427 kb on - strandat 142.453 kb on + strandat 142.522 kb on - strand, within DVUA0104.1at 142.605 kb on - strand, within DVUA0104.1at 142.627 kb on + strand, within DVUA0104.1at 142.640 kb on - strand, within DVUA0104.1at 142.696 kb on + strand, within DVUA0104.1at 142.731 kb on - strand, within DVUA0104.1at 142.786 kb on - strandat 143.040 kb on - strand, within DORF831at 143.275 kb on + strand, within DVUA0105at 143.345 kb on - strand, within DVUA0105at 143.475 kb on - strand, within DVUA0105at 143.508 kb on + strandat 143.516 kb on - strandat 143.519 kb on + strandat 143.572 kb on - strandat 143.575 kb on - strandat 143.578 kb on - strandat 143.579 kb on + strandat 143.597 kb on - strandat 143.785 kb on + strand, within DVUA0106at 143.806 kb on + strand, within DVUA0106at 143.814 kb on - strand, within DVUA0106at 143.814 kb on - strand, within DVUA0106at 143.833 kb on + strand, within DVUA0106at 143.892 kb on - strand, within DVUA0106at 143.906 kb on + strand, within DVUA0106at 143.906 kb on + strand, within DVUA0106at 143.914 kb on - strand, within DVUA0106at 143.916 kb on - strand, within DVUA0106at 143.962 kb on - strand, within DVUA0106at 144.009 kb on + strand, within DVUA0106at 144.050 kb on + strand, within DVUA0106at 144.090 kb on - strand, within DVUA0106at 144.148 kb on + strand, within DVUA0106at 144.339 kb on - strand, within DVUA0106at 144.353 kb on + strand, within DVUA0106at 144.353 kb on + strand, within DVUA0106at 144.353 kb on + strand, within DVUA0106at 144.353 kb on + strand, within DVUA0106at 144.361 kb on - strand, within DVUA0106at 144.391 kb on - strand, within DVUA0106at 144.439 kb on - strand, within DVUA0106at 144.488 kb on + strand, within DVUA0106

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM
remove
142,147 - sctV DVUA0104 0.87 +0.2
142,147 - sctV DVUA0104 0.87 -0.2
142,161 + sctV DVUA0104 0.88 -0.3
142,169 - sctV DVUA0104 0.88 -1.1
142,169 - sctV DVUA0104 0.88 -0.7
142,396 + +2.2
142,427 - -0.7
142,427 - -0.0
142,427 - -1.0
142,453 + +0.6
142,522 - DVUA0104.1 0.29 -1.4
142,605 - DVUA0104.1 0.52 +1.4
142,627 + DVUA0104.1 0.58 -0.4
142,640 - DVUA0104.1 0.62 -0.6
142,696 + DVUA0104.1 0.77 -1.5
142,731 - DVUA0104.1 0.87 -0.4
142,786 - +1.8
143,040 - DORF831 0.70 -0.7
143,275 + DVUA0105 0.35 -2.8
143,345 - DVUA0105 0.53 -1.3
143,475 - DVUA0105 0.88 -1.3
143,508 + -0.1
143,516 - -0.3
143,519 + -2.0
143,572 - -0.9
143,575 - +1.1
143,578 - -0.8
143,579 + -1.0
143,597 - -1.0
143,785 + DVUA0106 0.23 -1.2
143,806 + DVUA0106 0.25 -0.9
143,814 - DVUA0106 0.26 -0.0
143,814 - DVUA0106 0.26 -3.0
143,833 + DVUA0106 0.28 -1.2
143,892 - DVUA0106 0.33 -0.7
143,906 + DVUA0106 0.34 -0.6
143,906 + DVUA0106 0.34 -0.5
143,914 - DVUA0106 0.35 +0.3
143,916 - DVUA0106 0.35 -1.0
143,962 - DVUA0106 0.39 -1.5
144,009 + DVUA0106 0.43 -1.5
144,050 + DVUA0106 0.47 +1.0
144,090 - DVUA0106 0.50 -1.4
144,148 + DVUA0106 0.56 -0.9
144,339 - DVUA0106 0.73 -1.4
144,353 + DVUA0106 0.74 -1.9
144,353 + DVUA0106 0.74 -0.7
144,353 + DVUA0106 0.74 -2.0
144,353 + DVUA0106 0.74 +2.1
144,361 - DVUA0106 0.75 +1.3
144,391 - DVUA0106 0.77 +0.1
144,439 - DVUA0106 0.82 +2.5
144,488 + DVUA0106 0.86 -0.9

Or see this region's nucleotide sequence