Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0081

Experiment: MoLS4 with L-Cysteine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcysC and DVUA0080 are separated by 97 nucleotidesDVUA0080 and DVUA0081 overlap by 1 nucleotidesDVUA0081 and xerD are separated by 304 nucleotides DVUA0079: cysC - adenylylsulfate kinase (TIGR), at 105,582 to 106,268 cysC DVUA0080: DVUA0080 - glycosyl transferase, group 2 family protein (TIGR), at 106,366 to 107,247 DVUA0080 DVUA0081: DVUA0081 - glycosyl transferase, group 1/2 family protein (TIGR), at 107,247 to 109,361 DVUA0081 DVUA0082: xerD - site-specific recombinase, phage integrase family (TIGR), at 109,666 to 110,697 xerD Position (kb) 107 108 109 110Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 106.367 kb on + strandat 106.439 kb on + strandat 106.575 kb on + strand, within DVUA0080at 106.593 kb on - strand, within DVUA0080at 106.620 kb on - strand, within DVUA0080at 106.622 kb on + strand, within DVUA0080at 107.110 kb on + strand, within DVUA0080at 107.334 kb on + strandat 107.342 kb on - strandat 107.362 kb on + strandat 107.448 kb on - strandat 107.736 kb on + strand, within DVUA0081at 107.851 kb on + strand, within DVUA0081at 108.049 kb on + strand, within DVUA0081at 108.285 kb on + strand, within DVUA0081at 108.366 kb on + strand, within DVUA0081at 108.387 kb on + strand, within DVUA0081at 108.454 kb on + strand, within DVUA0081at 108.616 kb on + strand, within DVUA0081at 108.949 kb on + strand, within DVUA0081at 109.181 kb on + strandat 109.189 kb on - strandat 109.189 kb on - strandat 109.376 kb on - strandat 109.376 kb on - strandat 109.376 kb on - strandat 109.382 kb on - strandat 109.388 kb on + strandat 109.440 kb on - strandat 109.871 kb on + strand, within xerDat 109.879 kb on - strand, within xerDat 109.913 kb on + strand, within xerDat 109.921 kb on - strand, within xerDat 109.991 kb on + strand, within xerDat 109.999 kb on - strand, within xerDat 109.999 kb on - strand, within xerDat 110.006 kb on + strand, within xerDat 110.014 kb on - strand, within xerDat 110.017 kb on - strand, within xerDat 110.311 kb on + strand, within xerD

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM
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106,367 + +5.1
106,439 + +0.7
106,575 + DVUA0080 0.24 +3.5
106,593 - DVUA0080 0.26 +1.3
106,620 - DVUA0080 0.29 +4.1
106,622 + DVUA0080 0.29 +3.1
107,110 + DVUA0080 0.84 +2.3
107,334 + +0.5
107,342 - +5.1
107,362 + +1.6
107,448 - +4.1
107,736 + DVUA0081 0.23 +2.5
107,851 + DVUA0081 0.29 +2.8
108,049 + DVUA0081 0.38 +2.5
108,285 + DVUA0081 0.49 +3.5
108,366 + DVUA0081 0.53 +1.4
108,387 + DVUA0081 0.54 +5.1
108,454 + DVUA0081 0.57 +1.6
108,616 + DVUA0081 0.65 +5.1
108,949 + DVUA0081 0.80 +3.1
109,181 + +2.8
109,189 - +2.3
109,189 - +4.1
109,376 - +0.9
109,376 - -0.9
109,376 - -0.5
109,382 - -1.3
109,388 + -0.7
109,440 - -1.7
109,871 + xerD DVUA0082 0.20 -0.9
109,879 - xerD DVUA0082 0.21 -2.2
109,913 + xerD DVUA0082 0.24 +0.5
109,921 - xerD DVUA0082 0.25 +0.5
109,991 + xerD DVUA0082 0.31 +2.8
109,999 - xerD DVUA0082 0.32 +1.6
109,999 - xerD DVUA0082 0.32 +0.7
110,006 + xerD DVUA0082 0.33 -0.6
110,014 - xerD DVUA0082 0.34 -0.0
110,017 - xerD DVUA0082 0.34 -0.9
110,311 + xerD DVUA0082 0.62 -1.0

Or see this region's nucleotide sequence