Experiment: MoLS4 with L-Cysteine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0549 and livG overlap by 1 nucleotides livG and livF overlap by 8 nucleotides livF and DVU0552 are separated by 201 nucleotides
DVU0549: DVU0549 - proline/arginine ABC transporter, permease component <small>(from data)</small>, at 619,154 to 620,377
DVU0549
DVU0550: livG - high-affinity branched-chain amino acid ABC transporter, ATP binding protein (TIGR), at 620,377 to 621,165
livG
DVU0551: livF - high-affinity branched-chain amino acid ABC transporter ATP-binding protein (TIGR), at 621,158 to 621,862
livF
DVU0552: DVU0552 - conserved hypothetical protein (TIGR), at 622,064 to 623,029
DVU0552
Position (kb) 620
621
622 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 619.457 kb on + strand, within DVU0549 at 619.471 kb on + strand, within DVU0549 at 619.518 kb on - strand, within DVU0549 at 619.518 kb on - strand, within DVU0549 at 619.615 kb on - strand, within DVU0549 at 619.616 kb on - strand, within DVU0549 at 619.660 kb on - strand, within DVU0549 at 619.660 kb on - strand, within DVU0549 at 619.678 kb on - strand, within DVU0549 at 619.717 kb on + strand, within DVU0549 at 619.794 kb on + strand, within DVU0549 at 619.877 kb on + strand, within DVU0549 at 619.965 kb on + strand, within DVU0549 at 620.000 kb on + strand, within DVU0549 at 620.007 kb on + strand, within DVU0549 at 620.091 kb on + strand, within DVU0549 at 620.095 kb on - strand, within DVU0549 at 620.100 kb on - strand, within DVU0549 at 620.184 kb on + strand, within DVU0549 at 620.192 kb on - strand, within DVU0549 at 620.322 kb on + strand at 620.455 kb on - strand at 620.459 kb on + strand, within livG at 620.481 kb on + strand, within livG at 620.667 kb on + strand, within livG at 620.797 kb on + strand, within livG at 620.826 kb on + strand, within livG at 620.850 kb on + strand, within livG at 620.850 kb on + strand, within livG at 620.850 kb on + strand, within livG at 620.858 kb on - strand, within livG at 620.858 kb on - strand, within livG at 620.858 kb on - strand, within livG at 620.916 kb on - strand, within livG at 621.000 kb on + strand, within livG at 621.044 kb on - strand, within livG at 621.098 kb on + strand at 621.101 kb on - strand at 621.130 kb on + strand at 621.167 kb on - strand at 621.167 kb on - strand at 621.177 kb on - strand at 621.177 kb on - strand at 621.221 kb on - strand at 621.280 kb on - strand, within livF at 621.280 kb on - strand, within livF at 621.287 kb on - strand, within livF at 621.311 kb on + strand, within livF at 621.321 kb on + strand, within livF at 621.461 kb on + strand, within livF at 621.552 kb on + strand, within livF at 621.552 kb on + strand, within livF at 621.555 kb on - strand, within livF at 621.756 kb on - strand, within livF at 621.930 kb on + strand at 621.967 kb on - strand at 621.999 kb on - strand at 622.005 kb on - strand at 622.010 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM remove 619,457 + DVU0549 0.25 +0.7 619,471 + DVU0549 0.26 +0.3 619,518 - DVU0549 0.30 +1.1 619,518 - DVU0549 0.30 -0.7 619,615 - DVU0549 0.38 -1.3 619,616 - DVU0549 0.38 -1.4 619,660 - DVU0549 0.41 +0.6 619,660 - DVU0549 0.41 +1.2 619,678 - DVU0549 0.43 +0.0 619,717 + DVU0549 0.46 +1.1 619,794 + DVU0549 0.52 +0.9 619,877 + DVU0549 0.59 -0.0 619,965 + DVU0549 0.66 +1.5 620,000 + DVU0549 0.69 +2.5 620,007 + DVU0549 0.70 -1.7 620,091 + DVU0549 0.77 +0.1 620,095 - DVU0549 0.77 -0.7 620,100 - DVU0549 0.77 +0.2 620,184 + DVU0549 0.84 +0.8 620,192 - DVU0549 0.85 +0.4 620,322 + -1.5 620,455 - +0.4 620,459 + livG DVU0550 0.10 +2.0 620,481 + livG DVU0550 0.13 +1.9 620,667 + livG DVU0550 0.37 +0.7 620,797 + livG DVU0550 0.53 +0.9 620,826 + livG DVU0550 0.57 -0.4 620,850 + livG DVU0550 0.60 -0.4 620,850 + livG DVU0550 0.60 +0.2 620,850 + livG DVU0550 0.60 +0.9 620,858 - livG DVU0550 0.61 +0.2 620,858 - livG DVU0550 0.61 +0.8 620,858 - livG DVU0550 0.61 -1.1 620,916 - livG DVU0550 0.68 +1.4 621,000 + livG DVU0550 0.79 -0.5 621,044 - livG DVU0550 0.85 +0.2 621,098 + +0.9 621,101 - +0.6 621,130 + +0.3 621,167 - -0.1 621,167 - -1.1 621,177 - +0.4 621,177 - -0.8 621,221 - -0.5 621,280 - livF DVU0551 0.17 +2.8 621,280 - livF DVU0551 0.17 -0.4 621,287 - livF DVU0551 0.18 +0.9 621,311 + livF DVU0551 0.22 +0.2 621,321 + livF DVU0551 0.23 -1.0 621,461 + livF DVU0551 0.43 +2.2 621,552 + livF DVU0551 0.56 +0.9 621,552 + livF DVU0551 0.56 +0.5 621,555 - livF DVU0551 0.56 -0.7 621,756 - livF DVU0551 0.85 +3.2 621,930 + -0.3 621,967 - +3.6 621,999 - -1.8 622,005 - -1.4 622,010 - -1.5
Or see this region's nucleotide sequence