Experiment: MoLS4 with L-Cysteine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0442 and DVU0443 are separated by 212 nucleotides DVU0443 and DVU0444 are separated by 7 nucleotides
DVU0442: DVU0442 - phoH-related protein (TIGR), at 499,787 to 500,983
DVU0442
DVU0443: DVU0443 - exonuclease, putative (Keith Keller), at 501,196 to 501,930
DVU0443
DVU0444: DVU0444 - CBS domain protein (TIGR), at 501,938 to 504,160
DVU0444
Position (kb) 501
502 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 500.199 kb on + strand, within DVU0442 at 500.207 kb on - strand, within DVU0442 at 500.348 kb on + strand, within DVU0442 at 500.349 kb on + strand, within DVU0442 at 500.356 kb on - strand, within DVU0442 at 500.372 kb on - strand, within DVU0442 at 500.382 kb on - strand, within DVU0442 at 500.428 kb on + strand, within DVU0442 at 500.428 kb on + strand, within DVU0442 at 500.431 kb on - strand, within DVU0442 at 500.534 kb on + strand, within DVU0442 at 500.615 kb on - strand, within DVU0442 at 500.633 kb on - strand, within DVU0442 at 500.732 kb on + strand, within DVU0442 at 500.816 kb on - strand, within DVU0442 at 500.818 kb on + strand, within DVU0442 at 500.826 kb on - strand, within DVU0442 at 500.947 kb on + strand at 501.075 kb on - strand at 501.090 kb on + strand at 501.210 kb on - strand at 501.218 kb on + strand at 501.242 kb on - strand at 501.258 kb on - strand at 501.386 kb on + strand, within DVU0443 at 501.394 kb on - strand, within DVU0443 at 501.394 kb on - strand, within DVU0443 at 501.454 kb on - strand, within DVU0443 at 501.474 kb on - strand, within DVU0443 at 501.476 kb on - strand, within DVU0443 at 501.598 kb on + strand, within DVU0443 at 501.774 kb on + strand, within DVU0443 at 501.797 kb on - strand, within DVU0443 at 501.855 kb on + strand, within DVU0443 at 501.863 kb on - strand at 501.925 kb on + strand at 501.945 kb on + strand at 501.953 kb on + strand at 501.953 kb on + strand at 501.960 kb on - strand at 501.966 kb on - strand at 502.002 kb on + strand at 502.002 kb on + strand at 502.049 kb on - strand at 502.054 kb on - strand at 502.059 kb on + strand at 502.081 kb on - strand at 502.132 kb on - strand at 502.174 kb on + strand, within DVU0444 at 502.174 kb on + strand, within DVU0444 at 502.179 kb on + strand, within DVU0444 at 502.182 kb on - strand, within DVU0444 at 502.182 kb on - strand, within DVU0444 at 502.185 kb on + strand, within DVU0444 at 502.187 kb on - strand, within DVU0444 at 502.216 kb on + strand, within DVU0444 at 502.277 kb on - strand, within DVU0444 at 502.284 kb on - strand, within DVU0444 at 502.295 kb on + strand, within DVU0444 at 502.303 kb on - strand, within DVU0444 at 502.320 kb on + strand, within DVU0444 at 502.323 kb on - strand, within DVU0444 at 502.325 kb on + strand, within DVU0444 at 502.356 kb on + strand, within DVU0444 at 502.423 kb on + strand, within DVU0444 at 502.425 kb on + strand, within DVU0444 at 502.431 kb on - strand, within DVU0444 at 502.431 kb on - strand, within DVU0444 at 502.446 kb on + strand, within DVU0444 at 502.471 kb on + strand, within DVU0444 at 502.471 kb on + strand, within DVU0444 at 502.471 kb on + strand, within DVU0444 at 502.471 kb on + strand, within DVU0444 at 502.471 kb on + strand, within DVU0444 at 502.479 kb on - strand, within DVU0444 at 502.479 kb on - strand, within DVU0444 at 502.572 kb on - strand, within DVU0444 at 502.572 kb on - strand, within DVU0444 at 502.616 kb on + strand, within DVU0444 at 502.640 kb on + strand, within DVU0444 at 502.665 kb on + strand, within DVU0444 at 502.691 kb on + strand, within DVU0444 at 502.699 kb on - strand, within DVU0444 at 502.842 kb on + strand, within DVU0444 at 502.858 kb on - strand, within DVU0444 at 502.862 kb on + strand, within DVU0444 at 502.927 kb on - strand, within DVU0444
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM remove 500,199 + DVU0442 0.34 -1.1 500,207 - DVU0442 0.35 -1.7 500,348 + DVU0442 0.47 -1.4 500,349 + DVU0442 0.47 -0.6 500,356 - DVU0442 0.48 +0.7 500,372 - DVU0442 0.49 -0.8 500,382 - DVU0442 0.50 -0.8 500,428 + DVU0442 0.54 -0.8 500,428 + DVU0442 0.54 -0.8 500,431 - DVU0442 0.54 -0.4 500,534 + DVU0442 0.62 +2.5 500,615 - DVU0442 0.69 +2.5 500,633 - DVU0442 0.71 -2.2 500,732 + DVU0442 0.79 +0.1 500,816 - DVU0442 0.86 -0.8 500,818 + DVU0442 0.86 +2.0 500,826 - DVU0442 0.87 +0.5 500,947 + -1.1 501,075 - -1.3 501,090 + +1.7 501,210 - -1.2 501,218 + -1.1 501,242 - +2.8 501,258 - +0.2 501,386 + DVU0443 0.26 -2.5 501,394 - DVU0443 0.27 +0.0 501,394 - DVU0443 0.27 -1.1 501,454 - DVU0443 0.35 -0.7 501,474 - DVU0443 0.38 +0.6 501,476 - DVU0443 0.38 -0.7 501,598 + DVU0443 0.55 -2.3 501,774 + DVU0443 0.79 -1.1 501,797 - DVU0443 0.82 +0.5 501,855 + DVU0443 0.90 +2.1 501,863 - +0.4 501,925 + -1.4 501,945 + +3.5 501,953 + -0.9 501,953 + -1.7 501,960 - +0.7 501,966 - -0.4 502,002 + +4.1 502,002 + -2.6 502,049 - +0.9 502,054 - +0.4 502,059 + -0.1 502,081 - -0.8 502,132 - -0.7 502,174 + DVU0444 0.11 +0.4 502,174 + DVU0444 0.11 +1.3 502,179 + DVU0444 0.11 -1.6 502,182 - DVU0444 0.11 -1.9 502,182 - DVU0444 0.11 -2.0 502,185 + DVU0444 0.11 -0.5 502,187 - DVU0444 0.11 +0.9 502,216 + DVU0444 0.13 +0.1 502,277 - DVU0444 0.15 +2.0 502,284 - DVU0444 0.16 -0.2 502,295 + DVU0444 0.16 +0.2 502,303 - DVU0444 0.16 -0.8 502,320 + DVU0444 0.17 -0.3 502,323 - DVU0444 0.17 +0.8 502,325 + DVU0444 0.17 -1.6 502,356 + DVU0444 0.19 -0.8 502,423 + DVU0444 0.22 -1.1 502,425 + DVU0444 0.22 -0.0 502,431 - DVU0444 0.22 -0.9 502,431 - DVU0444 0.22 -0.4 502,446 + DVU0444 0.23 -0.6 502,471 + DVU0444 0.24 -2.0 502,471 + DVU0444 0.24 -0.4 502,471 + DVU0444 0.24 +1.7 502,471 + DVU0444 0.24 -0.7 502,471 + DVU0444 0.24 +0.4 502,479 - DVU0444 0.24 -2.1 502,479 - DVU0444 0.24 -2.0 502,572 - DVU0444 0.29 -0.8 502,572 - DVU0444 0.29 +1.1 502,616 + DVU0444 0.30 +4.1 502,640 + DVU0444 0.32 -0.2 502,665 + DVU0444 0.33 -0.4 502,691 + DVU0444 0.34 -0.1 502,699 - DVU0444 0.34 +0.6 502,842 + DVU0444 0.41 +1.2 502,858 - DVU0444 0.41 -0.8 502,862 + DVU0444 0.42 -0.5 502,927 - DVU0444 0.44 +1.4
Or see this region's nucleotide sequence