Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1917

Experiment: MoLS4 with L-Cysteine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1914 and DVU1915 are separated by 41 nucleotidesDVU1915 and DVU1916 overlap by 23 nucleotidesDVU1916 and hysB are separated by 93 nucleotideshysB and hysA are separated by 33 nucleotides DVU1914: DVU1914 - (R)-citramalate synthase (EC 2.3.3.21) (from data), at 1,988,931 to 1,990,547 DVU1914 DVU1915: DVU1915 - hypothetical protein (TIGR), at 1,990,589 to 1,990,864 DVU1915 DVU1916: DVU1916 - hypothetical protein (TIGR), at 1,990,842 to 1,990,973 DVU1916 DVU1917: hysB - periplasmic [NiFeSe] hydrogenase, small subunit (TIGR), at 1,991,067 to 1,992,020 hysB DVU1918: hysA - periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing (TIGR), at 1,992,054 to 1,993,586 hysA Position (kb) 1991 1992 1993Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1990.135 kb on + strand, within DVU1914at 1990.205 kb on - strand, within DVU1914at 1990.259 kb on + strand, within DVU1914at 1990.266 kb on + strand, within DVU1914at 1990.283 kb on + strand, within DVU1914at 1990.325 kb on - strand, within DVU1914at 1990.336 kb on + strand, within DVU1914at 1990.540 kb on - strandat 1990.947 kb on - strand, within DVU1916at 1991.079 kb on - strandat 1991.126 kb on - strandat 1991.251 kb on + strand, within hysBat 1991.251 kb on - strand, within hysBat 1991.402 kb on - strand, within hysBat 1991.735 kb on + strand, within hysBat 1991.779 kb on + strand, within hysBat 1991.834 kb on - strand, within hysBat 1991.834 kb on - strand, within hysBat 1991.929 kb on - strandat 1991.984 kb on - strandat 1992.151 kb on - strandat 1992.170 kb on + strandat 1992.178 kb on - strandat 1992.299 kb on - strand, within hysAat 1992.337 kb on + strand, within hysAat 1992.432 kb on + strand, within hysAat 1992.471 kb on + strand, within hysAat 1992.487 kb on + strand, within hysAat 1992.489 kb on - strand, within hysAat 1992.546 kb on - strand, within hysAat 1992.596 kb on + strand, within hysAat 1992.680 kb on + strand, within hysAat 1992.728 kb on - strand, within hysAat 1992.758 kb on + strand, within hysAat 1992.774 kb on + strand, within hysAat 1992.776 kb on + strand, within hysAat 1992.784 kb on - strand, within hysAat 1992.784 kb on - strand, within hysAat 1992.860 kb on + strand, within hysAat 1992.868 kb on - strand, within hysAat 1992.869 kb on - strand, within hysAat 1992.995 kb on - strand, within hysA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM
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1,990,135 + DVU1914 0.74 -0.9
1,990,205 - DVU1914 0.79 +1.6
1,990,259 + DVU1914 0.82 -1.9
1,990,266 + DVU1914 0.83 -2.3
1,990,283 + DVU1914 0.84 +2.7
1,990,325 - DVU1914 0.86 -1.1
1,990,336 + DVU1914 0.87 -2.5
1,990,540 - +1.4
1,990,947 - DVU1916 0.80 -1.1
1,991,079 - +1.7
1,991,126 - +1.1
1,991,251 + hysB DVU1917 0.19 -3.0
1,991,251 - hysB DVU1917 0.19 -1.9
1,991,402 - hysB DVU1917 0.35 -1.5
1,991,735 + hysB DVU1917 0.70 +0.4
1,991,779 + hysB DVU1917 0.75 -1.2
1,991,834 - hysB DVU1917 0.80 -1.4
1,991,834 - hysB DVU1917 0.80 -1.6
1,991,929 - -1.6
1,991,984 - -1.2
1,992,151 - -1.5
1,992,170 + +2.0
1,992,178 - +2.0
1,992,299 - hysA DVU1918 0.16 +2.7
1,992,337 + hysA DVU1918 0.18 +3.5
1,992,432 + hysA DVU1918 0.25 -0.4
1,992,471 + hysA DVU1918 0.27 -1.4
1,992,487 + hysA DVU1918 0.28 +0.2
1,992,489 - hysA DVU1918 0.28 -1.3
1,992,546 - hysA DVU1918 0.32 -1.4
1,992,596 + hysA DVU1918 0.35 -0.6
1,992,680 + hysA DVU1918 0.41 -1.0
1,992,728 - hysA DVU1918 0.44 +1.0
1,992,758 + hysA DVU1918 0.46 -0.9
1,992,774 + hysA DVU1918 0.47 -0.8
1,992,776 + hysA DVU1918 0.47 -0.8
1,992,784 - hysA DVU1918 0.48 +2.2
1,992,784 - hysA DVU1918 0.48 -1.0
1,992,860 + hysA DVU1918 0.53 +3.3
1,992,868 - hysA DVU1918 0.53 +0.9
1,992,869 - hysA DVU1918 0.53 -0.6
1,992,995 - hysA DVU1918 0.61 -1.8

Or see this region's nucleotide sequence