Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1687

Experiment: MoLS4 with L-Cysteine as nutrient 10mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU1686 and DVU1687 overlap by 4 nucleotidesDVU1687 and DVU1688 overlap by 4 nucleotides DVU1686: DVU1686 - ATPase, AAA family (TIGR), at 1,764,863 to 1,766,098 DVU1686 DVU1687: DVU1687 - glycosyl transferase, group 2 family protein (TIGR), at 1,766,095 to 1,766,802 DVU1687 DVU1688: DVU1688 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative (TIGR), at 1,766,799 to 1,767,608 DVU1688 Position (kb) 1766 1767Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1765.275 kb on + strand, within DVU1686at 1765.275 kb on + strand, within DVU1686at 1765.281 kb on - strand, within DVU1686at 1765.283 kb on - strand, within DVU1686at 1765.332 kb on - strand, within DVU1686at 1765.332 kb on - strand, within DVU1686at 1765.332 kb on - strand, within DVU1686at 1765.345 kb on - strand, within DVU1686at 1765.476 kb on + strand, within DVU1686at 1765.591 kb on - strand, within DVU1686at 1765.707 kb on + strand, within DVU1686at 1765.746 kb on + strand, within DVU1686at 1765.922 kb on + strand, within DVU1686at 1765.922 kb on + strand, within DVU1686at 1765.922 kb on + strand, within DVU1686at 1765.922 kb on + strand, within DVU1686at 1765.922 kb on + strand, within DVU1686at 1765.929 kb on + strand, within DVU1686at 1765.930 kb on - strand, within DVU1686at 1765.930 kb on - strand, within DVU1686at 1766.037 kb on - strandat 1766.099 kb on + strandat 1766.109 kb on + strandat 1766.140 kb on - strandat 1766.160 kb on - strandat 1766.259 kb on + strand, within DVU1687at 1766.267 kb on - strand, within DVU1687at 1766.337 kb on + strand, within DVU1687at 1766.505 kb on + strand, within DVU1687at 1766.513 kb on - strand, within DVU1687at 1766.520 kb on - strand, within DVU1687at 1766.539 kb on - strand, within DVU1687at 1766.671 kb on + strand, within DVU1687at 1766.679 kb on - strand, within DVU1687

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM
remove
1,765,275 + DVU1686 0.33 +2.6
1,765,275 + DVU1686 0.33 -2.7
1,765,281 - DVU1686 0.34 -1.8
1,765,283 - DVU1686 0.34 +0.9
1,765,332 - DVU1686 0.38 -1.0
1,765,332 - DVU1686 0.38 -2.3
1,765,332 - DVU1686 0.38 +4.4
1,765,345 - DVU1686 0.39 +0.4
1,765,476 + DVU1686 0.50 -1.0
1,765,591 - DVU1686 0.59 -1.0
1,765,707 + DVU1686 0.68 +2.4
1,765,746 + DVU1686 0.71 +2.8
1,765,922 + DVU1686 0.86 -2.2
1,765,922 + DVU1686 0.86 +2.2
1,765,922 + DVU1686 0.86 +3.8
1,765,922 + DVU1686 0.86 -1.1
1,765,922 + DVU1686 0.86 +0.0
1,765,929 + DVU1686 0.86 -0.0
1,765,930 - DVU1686 0.86 +3.8
1,765,930 - DVU1686 0.86 +1.7
1,766,037 - +1.7
1,766,099 + -1.4
1,766,109 + -0.7
1,766,140 - -0.5
1,766,160 - +3.0
1,766,259 + DVU1687 0.23 -0.7
1,766,267 - DVU1687 0.24 -1.1
1,766,337 + DVU1687 0.34 -1.3
1,766,505 + DVU1687 0.58 -1.5
1,766,513 - DVU1687 0.59 -2.1
1,766,520 - DVU1687 0.60 +2.4
1,766,539 - DVU1687 0.63 -0.9
1,766,671 + DVU1687 0.81 +1.9
1,766,679 - DVU1687 0.82 -0.9

Or see this region's nucleotide sequence