Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1507

Experiment: MoLS4 with L-Cysteine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1504 and DVU1505 are separated by 83 nucleotidesDVU1505 and DVU1506 are separated by 19 nucleotidesDVU1506 and DVU1507 overlap by 4 nucleotidesDVU1507 and DVU1508 overlap by 1 nucleotidesDVU1508 and DVU1509 are separated by 163 nucleotidesDVU1509 and DVU1510 overlap by 8 nucleotides DVU1504: DVU1504 - terminase, small subunit (TIGR), at 1,579,915 to 1,580,382 DVU1504 DVU1505: DVU1505 - holin, putative (TIGR), at 1,580,466 to 1,580,864 DVU1505 DVU1506: DVU1506 - hypothetical protein (TIGR), at 1,580,884 to 1,581,132 DVU1506 DVU1507: DVU1507 - hypothetical protein (TIGR), at 1,581,129 to 1,581,479 DVU1507 DVU1508: DVU1508 - conserved hypothetical protein (TIGR), at 1,581,479 to 1,581,886 DVU1508 DVU1509: DVU1509 - conserved hypothetical protein (TIGR), at 1,582,050 to 1,582,439 DVU1509 DVU1510: DVU1510 - hypothetical protein (TIGR), at 1,582,432 to 1,582,995 DVU1510 Position (kb) 1581 1582Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1580.210 kb on - strand, within DVU1504at 1580.241 kb on - strand, within DVU1504at 1580.323 kb on + strand, within DVU1504at 1580.345 kb on + strandat 1580.474 kb on + strandat 1580.502 kb on + strandat 1580.541 kb on - strand, within DVU1505at 1580.553 kb on - strand, within DVU1505at 1580.553 kb on - strand, within DVU1505at 1580.625 kb on + strand, within DVU1505at 1580.796 kb on + strand, within DVU1505at 1580.819 kb on - strand, within DVU1505at 1581.081 kb on + strand, within DVU1506at 1581.136 kb on - strandat 1581.182 kb on + strand, within DVU1507at 1581.268 kb on + strand, within DVU1507at 1581.329 kb on - strand, within DVU1507at 1581.992 kb on - strandat 1582.019 kb on - strandat 1582.023 kb on + strandat 1582.033 kb on + strandat 1582.429 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM
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1,580,210 - DVU1504 0.63 +3.4
1,580,241 - DVU1504 0.70 -1.3
1,580,323 + DVU1504 0.87 -0.3
1,580,345 + +2.0
1,580,474 + +0.9
1,580,502 + -1.2
1,580,541 - DVU1505 0.19 +1.3
1,580,553 - DVU1505 0.22 -0.7
1,580,553 - DVU1505 0.22 -0.9
1,580,625 + DVU1505 0.40 -3.0
1,580,796 + DVU1505 0.83 -0.5
1,580,819 - DVU1505 0.88 -1.0
1,581,081 + DVU1506 0.79 -1.0
1,581,136 - +2.2
1,581,182 + DVU1507 0.15 -0.9
1,581,268 + DVU1507 0.40 -1.5
1,581,329 - DVU1507 0.57 -1.8
1,581,992 - -0.8
1,582,019 - +1.6
1,582,023 + -0.0
1,582,033 + +1.4
1,582,429 + -1.5

Or see this region's nucleotide sequence