Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1292

Experiment: MoLS4 with L-Cysteine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsrM and DVU1291 are separated by 34 nucleotidesDVU1291 and DVU1292 overlap by 71 nucleotidesDVU1292 and DORF10446 are separated by 95 nucleotides DVU1290: DsrM - Inner membrane protein binds 2 heme b (Shelley Haveman), at 1,384,047 to 1,385,051 DsrM DVU1291: DVU1291 - hypothetical protein (TIGR), at 1,385,086 to 1,385,625 DVU1291 DVU1292: DVU1292 - hypothetical protein (TIGR), at 1,385,555 to 1,385,728 DVU1292 DORF10446: DORF10446 - SEED: FIG00604570: hypothetical protein, at 1,385,824 to 1,386,771 DORF10446 Position (kb) 1385 1386Strain fitness (log2 ratio) -2 -1 0 1at 1385.651 kb on - strand, within DVU1292at 1385.695 kb on - strand, within DVU1292at 1385.721 kb on - strandat 1385.723 kb on + strandat 1385.860 kb on + strandat 1385.955 kb on + strand, within DORF10446at 1385.981 kb on - strand, within DORF10446at 1386.023 kb on + strand, within DORF10446at 1386.113 kb on + strand, within DORF10446at 1386.289 kb on + strand, within DORF10446at 1386.333 kb on + strand, within DORF10446at 1386.430 kb on + strand, within DORF10446at 1386.433 kb on - strand, within DORF10446at 1386.473 kb on + strand, within DORF10446at 1386.517 kb on + strand, within DORF10446at 1386.549 kb on - strand, within DORF10446at 1386.631 kb on - strand, within DORF10446at 1386.704 kb on + strandat 1386.727 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM
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1,385,651 - DVU1292 0.55 -1.1
1,385,695 - DVU1292 0.80 -1.4
1,385,721 - +1.4
1,385,723 + +1.1
1,385,860 + +0.5
1,385,955 + DORF10446 0.14 +0.2
1,385,981 - DORF10446 0.17 +0.7
1,386,023 + DORF10446 0.21 -0.6
1,386,113 + DORF10446 0.30 -0.7
1,386,289 + DORF10446 0.49 -2.7
1,386,333 + DORF10446 0.54 -1.4
1,386,430 + DORF10446 0.64 -1.0
1,386,433 - DORF10446 0.64 -0.8
1,386,473 + DORF10446 0.68 -0.1
1,386,517 + DORF10446 0.73 -1.0
1,386,549 - DORF10446 0.76 +1.3
1,386,631 - DORF10446 0.85 -1.5
1,386,704 + -1.9
1,386,727 + +0.1

Or see this region's nucleotide sequence