Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1212

Experiment: MoLS4 with L-Cysteine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1210 and rpmB are separated by 202 nucleotidesrpmB and fsxA are separated by 306 nucleotidesfsxA and DVU1213 overlap by 4 nucleotides DVU1210: DVU1210 - conserved hypothetical protein (TIGR), at 1,300,495 to 1,301,031 DVU1210 DVU1211: rpmB - ribosomal protein L28 (TIGR), at 1,301,234 to 1,301,443 rpmB DVU1212: fsxA - fxsA protein (TIGR), at 1,301,750 to 1,302,310 fsxA DVU1213: DVU1213 - rhomboid family protein (TIGR), at 1,302,307 to 1,303,320 DVU1213 Position (kb) 1301 1302 1303Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1301.058 kb on - strandat 1301.840 kb on - strand, within fsxAat 1301.851 kb on - strand, within fsxAat 1301.876 kb on + strand, within fsxAat 1301.909 kb on - strand, within fsxAat 1301.936 kb on + strand, within fsxAat 1301.952 kb on - strand, within fsxAat 1302.154 kb on + strand, within fsxAat 1302.245 kb on - strand, within fsxAat 1302.280 kb on + strandat 1302.334 kb on - strandat 1302.421 kb on - strand, within DVU1213at 1302.426 kb on - strand, within DVU1213at 1302.461 kb on - strand, within DVU1213at 1302.461 kb on - strand, within DVU1213at 1302.519 kb on - strand, within DVU1213at 1302.643 kb on + strand, within DVU1213at 1302.782 kb on - strand, within DVU1213at 1302.796 kb on + strand, within DVU1213at 1302.963 kb on - strand, within DVU1213at 1303.009 kb on + strand, within DVU1213at 1303.014 kb on + strand, within DVU1213at 1303.014 kb on - strand, within DVU1213at 1303.116 kb on + strand, within DVU1213at 1303.116 kb on + strand, within DVU1213at 1303.116 kb on + strand, within DVU1213at 1303.186 kb on + strand, within DVU1213at 1303.252 kb on + strandat 1303.268 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM
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1,301,058 - -1.3
1,301,840 - fsxA DVU1212 0.16 -1.7
1,301,851 - fsxA DVU1212 0.18 -3.1
1,301,876 + fsxA DVU1212 0.22 -1.5
1,301,909 - fsxA DVU1212 0.28 +1.4
1,301,936 + fsxA DVU1212 0.33 -1.3
1,301,952 - fsxA DVU1212 0.36 -1.5
1,302,154 + fsxA DVU1212 0.72 +0.5
1,302,245 - fsxA DVU1212 0.88 -0.9
1,302,280 + +1.4
1,302,334 - +0.0
1,302,421 - DVU1213 0.11 -1.4
1,302,426 - DVU1213 0.12 -1.6
1,302,461 - DVU1213 0.15 +2.2
1,302,461 - DVU1213 0.15 -1.2
1,302,519 - DVU1213 0.21 -1.5
1,302,643 + DVU1213 0.33 -2.0
1,302,782 - DVU1213 0.47 -1.2
1,302,796 + DVU1213 0.48 +0.2
1,302,963 - DVU1213 0.65 -1.0
1,303,009 + DVU1213 0.69 -0.1
1,303,014 + DVU1213 0.70 -1.2
1,303,014 - DVU1213 0.70 -1.9
1,303,116 + DVU1213 0.80 +0.4
1,303,116 + DVU1213 0.80 -1.1
1,303,116 + DVU1213 0.80 -1.4
1,303,186 + DVU1213 0.87 -0.9
1,303,252 + -1.3
1,303,268 + +3.2

Or see this region's nucleotide sequence