Experiment: MoLS4 with L-Cysteine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1128 and DVU1129 overlap by 1 nucleotides DVU1129 and DVU1130 are separated by 73 nucleotides DVU1130 and DVU1131 overlap by 17 nucleotides DVU1131 and DVU1132 overlap by 4 nucleotides DVU1132 and DVU1133 overlap by 37 nucleotides
DVU1128: DVU1128 - lysozyme, putative (TIGR), at 1,230,114 to 1,230,779
DVU1128
DVU1129: DVU1129 - conserved hypothetical protein (TIGR), at 1,230,779 to 1,231,147
DVU1129
DVU1130: DVU1130 - DNA-binding protein (TIGR), at 1,231,221 to 1,231,685
DVU1130
DVU1131: DVU1131 - hypothetical protein (TIGR), at 1,231,669 to 1,232,034
DVU1131
DVU1132: DVU1132 - conserved hypothetical protein (TIGR), at 1,232,031 to 1,232,540
DVU1132
DVU1133: DVU1133 - hypothetical protein (TIGR), at 1,232,504 to 1,232,962
DVU1133
Position (kb) 1231
1232 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1230.227 kb on + strand, within DVU1128 at 1230.377 kb on + strand, within DVU1128 at 1230.459 kb on + strand, within DVU1128 at 1230.460 kb on + strand, within DVU1128 at 1230.508 kb on + strand, within DVU1128 at 1230.508 kb on + strand, within DVU1128 at 1230.516 kb on - strand, within DVU1128 at 1230.545 kb on - strand, within DVU1128 at 1230.626 kb on - strand, within DVU1128 at 1230.652 kb on - strand, within DVU1128 at 1230.779 kb on + strand at 1230.889 kb on - strand, within DVU1129 at 1230.889 kb on - strand, within DVU1129 at 1230.936 kb on + strand, within DVU1129 at 1230.996 kb on + strand, within DVU1129 at 1231.006 kb on - strand, within DVU1129 at 1231.049 kb on - strand, within DVU1129 at 1231.080 kb on - strand, within DVU1129 at 1231.213 kb on + strand at 1231.310 kb on - strand, within DVU1130 at 1231.317 kb on + strand, within DVU1130 at 1231.382 kb on + strand, within DVU1130 at 1231.403 kb on - strand, within DVU1130 at 1231.476 kb on + strand, within DVU1130 at 1231.539 kb on - strand, within DVU1130 at 1231.588 kb on + strand, within DVU1130 at 1231.598 kb on - strand, within DVU1130 at 1231.727 kb on + strand, within DVU1131 at 1231.727 kb on + strand, within DVU1131 at 1231.758 kb on + strand, within DVU1131 at 1231.776 kb on - strand, within DVU1131 at 1231.777 kb on + strand, within DVU1131 at 1231.783 kb on - strand, within DVU1131 at 1231.784 kb on + strand, within DVU1131 at 1231.836 kb on - strand, within DVU1131 at 1231.869 kb on - strand, within DVU1131 at 1232.257 kb on - strand, within DVU1132 at 1232.287 kb on - strand, within DVU1132 at 1232.344 kb on + strand, within DVU1132 at 1232.474 kb on + strand, within DVU1132 at 1232.479 kb on + strand, within DVU1132 at 1232.479 kb on + strand, within DVU1132 at 1232.479 kb on + strand, within DVU1132 at 1232.487 kb on - strand, within DVU1132 at 1232.554 kb on + strand, within DVU1133 at 1232.578 kb on + strand, within DVU1133
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM remove 1,230,227 + DVU1128 0.17 -0.4 1,230,377 + DVU1128 0.39 +2.9 1,230,459 + DVU1128 0.52 -1.6 1,230,460 + DVU1128 0.52 -0.6 1,230,508 + DVU1128 0.59 -1.3 1,230,508 + DVU1128 0.59 +3.6 1,230,516 - DVU1128 0.60 +1.5 1,230,545 - DVU1128 0.65 -1.0 1,230,626 - DVU1128 0.77 -0.5 1,230,652 - DVU1128 0.81 -1.0 1,230,779 + +1.3 1,230,889 - DVU1129 0.30 +2.6 1,230,889 - DVU1129 0.30 -1.3 1,230,936 + DVU1129 0.43 -0.9 1,230,996 + DVU1129 0.59 +1.3 1,231,006 - DVU1129 0.62 -0.2 1,231,049 - DVU1129 0.73 +0.9 1,231,080 - DVU1129 0.82 -1.7 1,231,213 + +1.2 1,231,310 - DVU1130 0.19 -0.5 1,231,317 + DVU1130 0.21 +2.4 1,231,382 + DVU1130 0.35 -1.7 1,231,403 - DVU1130 0.39 -1.7 1,231,476 + DVU1130 0.55 -0.9 1,231,539 - DVU1130 0.68 -2.0 1,231,588 + DVU1130 0.79 +1.4 1,231,598 - DVU1130 0.81 -1.5 1,231,727 + DVU1131 0.16 -1.5 1,231,727 + DVU1131 0.16 -1.6 1,231,758 + DVU1131 0.24 -1.0 1,231,776 - DVU1131 0.29 +0.1 1,231,777 + DVU1131 0.30 -1.4 1,231,783 - DVU1131 0.31 -1.9 1,231,784 + DVU1131 0.31 -1.2 1,231,836 - DVU1131 0.46 +1.9 1,231,869 - DVU1131 0.55 +0.3 1,232,257 - DVU1132 0.44 -2.0 1,232,287 - DVU1132 0.50 +0.8 1,232,344 + DVU1132 0.61 +0.1 1,232,474 + DVU1132 0.87 -0.8 1,232,479 + DVU1132 0.88 -1.5 1,232,479 + DVU1132 0.88 -1.2 1,232,479 + DVU1132 0.88 -0.8 1,232,487 - DVU1132 0.89 -0.3 1,232,554 + DVU1133 0.11 +0.8 1,232,578 + DVU1133 0.16 +0.8
Or see this region's nucleotide sequence