Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0951

Experiment: MoLS4 with L-Cysteine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0948 and DVU0949 are separated by 47 nucleotidesDVU0949 and moeA-2 are separated by 79 nucleotidesmoeA-2 and DVU0952 are separated by 1 nucleotides DVU0948: DVU0948 - conserved hypothetical protein (TIGR), at 1,042,559 to 1,042,987 DVU0948 DVU0949: DVU0949 - conserved domain protein (TIGR), at 1,043,035 to 1,043,796 DVU0949 DVU0951: moeA-2 - molybdopterin biosynthesis MoeA protein, putative (TIGR), at 1,043,876 to 1,045,294 moeA-2 DVU0952: DVU0952 - conserved hypothetical protein TIGR00282 (TIGR), at 1,045,296 to 1,046,168 DVU0952 Position (kb) 1043 1044 1045 1046Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1042.878 kb on - strand, within DVU0948at 1042.952 kb on - strandat 1043.032 kb on + strandat 1043.047 kb on + strandat 1043.047 kb on + strandat 1043.117 kb on - strand, within DVU0949at 1043.185 kb on - strand, within DVU0949at 1043.246 kb on + strand, within DVU0949at 1043.278 kb on - strand, within DVU0949at 1043.367 kb on - strand, within DVU0949at 1043.452 kb on - strand, within DVU0949at 1043.469 kb on - strand, within DVU0949at 1043.482 kb on + strand, within DVU0949at 1043.501 kb on + strand, within DVU0949at 1043.506 kb on + strand, within DVU0949at 1043.532 kb on + strand, within DVU0949at 1043.567 kb on - strand, within DVU0949at 1043.587 kb on - strand, within DVU0949at 1043.655 kb on - strand, within DVU0949at 1043.666 kb on - strand, within DVU0949at 1043.753 kb on + strandat 1043.901 kb on - strandat 1043.905 kb on + strandat 1043.915 kb on + strandat 1043.915 kb on + strandat 1043.942 kb on + strandat 1043.989 kb on + strandat 1044.210 kb on + strand, within moeA-2at 1044.234 kb on + strand, within moeA-2at 1044.254 kb on + strand, within moeA-2at 1044.335 kb on - strand, within moeA-2at 1044.477 kb on - strand, within moeA-2at 1044.488 kb on + strand, within moeA-2at 1044.683 kb on - strand, within moeA-2at 1044.737 kb on + strand, within moeA-2at 1044.802 kb on - strand, within moeA-2at 1044.943 kb on + strand, within moeA-2at 1044.944 kb on + strand, within moeA-2at 1044.972 kb on - strand, within moeA-2at 1045.056 kb on + strand, within moeA-2at 1045.076 kb on - strand, within moeA-2at 1045.142 kb on + strand, within moeA-2at 1045.189 kb on + strandat 1045.287 kb on - strandat 1045.288 kb on + strandat 1045.296 kb on - strandat 1045.339 kb on + strandat 1045.347 kb on - strandat 1045.347 kb on - strandat 1045.349 kb on + strandat 1045.479 kb on + strand, within DVU0952at 1045.479 kb on + strand, within DVU0952at 1045.600 kb on - strand, within DVU0952at 1045.629 kb on - strand, within DVU0952at 1045.718 kb on + strand, within DVU0952at 1045.726 kb on - strand, within DVU0952at 1045.752 kb on + strand, within DVU0952at 1045.781 kb on - strand, within DVU0952at 1045.781 kb on - strand, within DVU0952at 1045.807 kb on - strand, within DVU0952at 1045.856 kb on - strand, within DVU0952at 1045.925 kb on + strand, within DVU0952at 1045.925 kb on + strand, within DVU0952at 1045.935 kb on + strand, within DVU0952at 1045.970 kb on + strand, within DVU0952at 1045.978 kb on - strand, within DVU0952at 1045.978 kb on - strand, within DVU0952at 1045.978 kb on - strand, within DVU0952at 1045.978 kb on - strand, within DVU0952at 1046.072 kb on + strand, within DVU0952at 1046.072 kb on + strand, within DVU0952at 1046.074 kb on + strand, within DVU0952at 1046.074 kb on + strand, within DVU0952at 1046.149 kb on + strandat 1046.169 kb on - strandat 1046.169 kb on - strandat 1046.188 kb on + strandat 1046.217 kb on + strandat 1046.220 kb on - strandat 1046.222 kb on + strandat 1046.222 kb on + strandat 1046.222 kb on + strandat 1046.222 kb on + strandat 1046.230 kb on - strandat 1046.230 kb on - strandat 1046.230 kb on - strandat 1046.230 kb on - strandat 1046.273 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM
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1,042,878 - DVU0948 0.74 +0.7
1,042,952 - -1.1
1,043,032 + -2.0
1,043,047 + -0.8
1,043,047 + -2.6
1,043,117 - DVU0949 0.11 -1.1
1,043,185 - DVU0949 0.20 +2.2
1,043,246 + DVU0949 0.28 -2.7
1,043,278 - DVU0949 0.32 -1.8
1,043,367 - DVU0949 0.44 -0.2
1,043,452 - DVU0949 0.55 +0.5
1,043,469 - DVU0949 0.57 -0.2
1,043,482 + DVU0949 0.59 -2.0
1,043,501 + DVU0949 0.61 +2.6
1,043,506 + DVU0949 0.62 +2.2
1,043,532 + DVU0949 0.65 +1.4
1,043,567 - DVU0949 0.70 -0.4
1,043,587 - DVU0949 0.72 -1.0
1,043,655 - DVU0949 0.81 -1.1
1,043,666 - DVU0949 0.83 -0.8
1,043,753 + +1.9
1,043,901 - -1.0
1,043,905 + -0.1
1,043,915 + -0.6
1,043,915 + -1.6
1,043,942 + -0.3
1,043,989 + -0.6
1,044,210 + moeA-2 DVU0951 0.24 +0.7
1,044,234 + moeA-2 DVU0951 0.25 +2.0
1,044,254 + moeA-2 DVU0951 0.27 +1.0
1,044,335 - moeA-2 DVU0951 0.32 +1.2
1,044,477 - moeA-2 DVU0951 0.42 +0.7
1,044,488 + moeA-2 DVU0951 0.43 -0.8
1,044,683 - moeA-2 DVU0951 0.57 +0.4
1,044,737 + moeA-2 DVU0951 0.61 +2.6
1,044,802 - moeA-2 DVU0951 0.65 +0.9
1,044,943 + moeA-2 DVU0951 0.75 -1.5
1,044,944 + moeA-2 DVU0951 0.75 +3.4
1,044,972 - moeA-2 DVU0951 0.77 -0.2
1,045,056 + moeA-2 DVU0951 0.83 +0.1
1,045,076 - moeA-2 DVU0951 0.85 +3.6
1,045,142 + moeA-2 DVU0951 0.89 +0.5
1,045,189 + +0.4
1,045,287 - -0.2
1,045,288 + +1.7
1,045,296 - +0.0
1,045,339 + -0.6
1,045,347 - +3.6
1,045,347 - +2.4
1,045,349 + -1.3
1,045,479 + DVU0952 0.21 -2.7
1,045,479 + DVU0952 0.21 +2.0
1,045,600 - DVU0952 0.35 -0.3
1,045,629 - DVU0952 0.38 -0.0
1,045,718 + DVU0952 0.48 +2.6
1,045,726 - DVU0952 0.49 -1.7
1,045,752 + DVU0952 0.52 -0.2
1,045,781 - DVU0952 0.56 +0.4
1,045,781 - DVU0952 0.56 -1.1
1,045,807 - DVU0952 0.59 +1.1
1,045,856 - DVU0952 0.64 +1.9
1,045,925 + DVU0952 0.72 +1.2
1,045,925 + DVU0952 0.72 -1.4
1,045,935 + DVU0952 0.73 +1.2
1,045,970 + DVU0952 0.77 -2.3
1,045,978 - DVU0952 0.78 -0.3
1,045,978 - DVU0952 0.78 -0.2
1,045,978 - DVU0952 0.78 -1.8
1,045,978 - DVU0952 0.78 -0.0
1,046,072 + DVU0952 0.89 -0.3
1,046,072 + DVU0952 0.89 -1.8
1,046,074 + DVU0952 0.89 -1.4
1,046,074 + DVU0952 0.89 +0.6
1,046,149 + +1.6
1,046,169 - -0.6
1,046,169 - -1.7
1,046,188 + -0.5
1,046,217 + +0.6
1,046,220 - -1.2
1,046,222 + -0.5
1,046,222 + +0.6
1,046,222 + -2.1
1,046,222 + +0.1
1,046,230 - +1.5
1,046,230 - +1.7
1,046,230 - -0.4
1,046,230 - -1.8
1,046,273 - -2.0

Or see this region's nucleotide sequence